BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14060.1

Length=877
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312408 jgi|Araly1|312408|fgenesh1_pm.C_scaffold_1001188           693    0.0  


> Ahg312408 jgi|Araly1|312408|fgenesh1_pm.C_scaffold_1001188
Length=936

 Score =  693 bits (375),  Expect = 0.0
 Identities = 461/498 (93%), Gaps = 23/498 (5%)
 Strand=Plus/Plus

Query  128  ATGGGAATTACATCATCCACAGATCCAAAAACAGAGACTTTTTCCGACCCCAAATCTCAA  187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAATTACATCATCCACAGATCCAAAAACAGAGACTTTTTCCGACCCCAAATCTCAA  60

Query  188  AACAACGAAGAAGCT-C--CTCCAGCTAAATCTGAGAAACTCGGAGATGCGTCTCCGTCG  244
            ||||||||||||||| |  ||||||||  ||||||| ||||||||||| |||||||||||
Sbjct  61   AACAACGAAGAAGCTCCAGCTCCAGCTCCATCTGAGGAACTCGGAGATTCGTCTCCGTCG  120

Query  245  ACTCCAGCTCCATCTGAGGAACTCGGAGATTCATCAACTGTTTGGAGAGACCCAGAAGAT  304
                  |    |   ||  |||| |||||||||||||||||||||||||| |||| ||||
Sbjct  121  ------G----A---GA--AACTTGGAGATTCATCAACTGTTTGGAGAGATCCAGTAGAT  165

Query  305  TCCGAATCGGATGAAAAACCAGAAGAAGGAGGAGGAGGAGACGCAGATGGTGAAGAGGAA  364
            ||||||||||||    ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct  166  TCCGAATCGGAT---CAACCACAAGAAGGAGGAGGAGGAGACGCAGATGGTGAAGAAGAA  222

Query  365  GGAGAGTGTGGGTTTTGCTTGTTTATGAAAGGAGGTGGTTGCAAAGATTCGTTTGTTGCT  424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  223  GGAGAGTGTGGGTTTTGCTTGTTTATGAAAGGAGGTGGTTGCAAAGATTCGTTTATTGCT  282

Query  425  TGGGAAGAGTGTGTTGAAG-CAGCTGAGAAGAACAAGGAAGATATTGTTACTAATTGTAT  483
            |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||
Sbjct  283  TGGGAAGAGTGTGTTG-AGAAAGCTGAGAAGAACAAGGAAGATATTGTTACTAATTGTAT  341

Query  484  GGAAGTCACTTCGATGTTGAAGAAGTGTATGGATGAACATTCCGATTACTATCAGCCCAT  543
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct  342  GGAAGTCACTTCGATGTTGAAGAAGTGTATGGATGAACATTCGGATTACTATCAGCCGAT  401

Query  544  TCTCGCTGCGgagaaagctgctgaagcagaggttaagaaggagcttgaagctgagaagaa  603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  402  TCTCGCTGCGGAGAAAGCTGCTGAAGCAGAGGTTAAGAAGGAGCTTGAAGCTGAGAAGAA  461

Query  604  gaaggaagaagaagagaa  621
            ||||||||||||||||||
Sbjct  462  GAAGGAAGAAGAAGAGAA  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32480725284


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5