BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14080.1
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312409 jgi|Araly1|312409|fgenesh1_pm.C_scaffold_1001189 2584 0.0
Ahg480406 jgi|Araly1|480406|fgenesh2_kg.3__3107__AT2G15390.2 1443 0.0
Ahg906274 jgi|Araly1|906274|Al_scaffold_0003_3402 1332 0.0
Ahg911203 jgi|Araly1|911203|Al_scaffold_0001_1457 880 0.0
Ahg911202 jgi|Araly1|911202|Al_scaffold_0001_1456 675 0.0
> Ahg312409 jgi|Araly1|312409|fgenesh1_pm.C_scaffold_1001189
Length=3378
Score = 2584 bits (1399), Expect = 0.0
Identities = 1533/1599 (96%), Gaps = 3/1599 (0%)
Strand=Plus/Plus
Query 17 ATCTCCAGCGAAGTTTTCAGAGCTTTTGGTTTGAAGATGAAGATTCTGCTAACACTAGTC 76
|||||| | |||| ||| || |||||| |||||||||||||||||||| ||||| || ||
Sbjct 1780 ATCTCCGGTGAAGCTTTGAGGGCTTTTAGTTTGAAGATGAAGATTCTGATAACAATAATC 1839
Query 77 TTTAGTGGCTTACTAATTTGGTCTGTAGTGTTAGTTTCATTCTCAAACGACTTCAACAAC 136
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1840 TTTAGTGGCTTACTAATTTGGTCCGTAGTGTTAGTTTCATTCTCTAACGACTTCAACAAC 1899
Query 137 CAACTTCTTGTTGCTACT---TCCAACGTTTCAAGGGAATCCGAAACACCGAGAGATAGA 193
|||||||||||||||||| |||||||||||| ||| ||||||||||||| |||| |
Sbjct 1900 CAACTTCTTGTTGCTACTACAACCAACGTTTCAAACGAAACCGAAACACCGAGGGATAAA 1959
Query 194 CTGATCGGAGGGCTTTTAACCGCGGATTTCGATGAAGGTTCTTGCTTGAGTAGGTATCAG 253
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 CTGATCGGAGGGCTTCTAACCGCGGATTTCGATGAAGGTTCTTGCTTGAGTAGGTATCAG 2019
Query 254 CAATCTTTGTTGTACCGGAAGGCTTCACCGTACAAGCCTTCGGAATATCTTGTCTCTAAG 313
|||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2020 CAATCTTTGTTGTATCGCAAGGCTTCACCGTACAAGCCTTCTGAATACCTTGTCTCTAAG 2079
Query 314 CTTAGAAGTTACGAGAAGCTTCACAAGCGTTGCGGTCCAGGCACGGATGCTTACAAGAAA 373
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2080 CTTAGAAGCTATGAGAAGCTTCACAAGCGTTGCGGTCCAGGCACGGATGCTTACAAGAAA 2139
Query 374 GCAACAGAGATTCTTGGTCATGATGATGAGAATTATGCAAGCAAATCTGTTGGTGAATGC 433
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2140 GCAACAGAGATTCTTGGTCATGATGATGAGAATTTTGCAAGCAAATCTGTTGGTGAATGC 2199
Query 434 AGATACATTGTGTGGGTTGCGGTTTACGGGCTTGGAAACAGAATACTTACTCTTGCCTCT 493
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 2200 AGATACATTGTGTGGGTTGCGGTTTACGGGCTAGGAAACAGAATCCTTACTCTTTCCTCT 2259
Query 494 GTCTTCCTCTACGCTCTCTTGACAGAGAGAGTTGTTCTTGTTGATCAAAGCAAAGATATA 553
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2260 GTCTTCCTCTACGCTCTCTTGACAGAGAGAGTCGTTCTTGTTGATCAAAGTAAAGATATA 2319
Query 554 AGTGATCTCTTCTGCGAGCCGTTTCCAGGTACTTCATGGTTACTTCCTCTTGAATTCCCA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2320 AGTGATCTCTTCTGCGAGCCGTTTCCAGGTACTTCATGGTTACTTCCTCTTGAATTCCCA 2379
Query 614 TTGATGAAGCAGATTGATGGCTACAACAAGGGATACTCTCGTTGTTACGGAACAATGTTG 673
|||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 2380 TTGATGAAACAGATTGATGGATACAACCAGGGATACTCTCGTTGTTACGGAACAATGTTG 2439
Query 674 AACAATCAAGCCATCAACTCCACTTTGATCCCGCCGCATCTGTATCTTCATATTCTTCAT 733
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 2440 AACAATCAAGCCATCAACTCCACTTTAATCCCTCCGCATCTCTATCTTCATATTCTTCAT 2499
Query 734 GATTCAAGGGATAATGATAAGATGTTCTTCTGTCAAAAGGATCAATCTTTAGTGGACAAA 793
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 2500 GATTCAAGGGATAATGATAAGATGTTCTTCTGCCAAAAGGATCAGTCTTTAGTCGACAAA 2559
Query 794 GTCCCTTGGTTGATTGTCAAAGCCAATGTCTACTTTGTCCCATCTTTATGGTTGAATCCA 853
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 2560 GTCCCTTGGTTGATTGTCAAAGCCAATGTCTACTTTGTTCCATCTCTATGGTTGAATCCA 2619
Query 854 ACTTTCCAAACCGAACTAATGAAGCTGTTCCCGCAGAAAGAAGCCGTCTTTCACCATCTC 913
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2620 ACTTTCCAAACCGAACTAATGAAGCTATTCCCGCAGAAAGAAGCTGTCTTTCACCATCTT 2679
Query 914 GCTCGGTATCTTTTTCACCCGACGAATCAAGTTTGGGGCTTGATCACAAGATCCTACAAT 973
|||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2680 GCTCGGCATCTTTTTCATCCGACGAATCAAGTTTGGGGATTGATCACAAGATCCTACAAT 2739
Query 974 GCCTACTTATCAAGAGCAGACGAGACGCTTGGTATTCAGATACGGGTATTCAGCGATCGA 1033
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2740 GCCTACTTATCAAGAGCAGACGAGACGCTTGGTATTCAGATACGGATATTCAGCAATCGA 2799
Query 1034 GCTGGATATTTTCAGCATGTAATGGATCAGGTCGTAGCTTGTACACGAAGAGAGAACCTT 1093
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2800 GCTGGATATTTTCAGCATGTAATGGATCAGGTCGTAGCTTGCACACGAAGAGAGAACCTT 2859
Query 1094 TTGCCTGAACCAGCTGCACAAGAAGAACCAAAAGTCAATATATCAAGAAGCCAGAAACTT 1153
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2860 TTGCCTGAACCAGCTGCACAAGAAGAATCAAAAGTCAATATATCAAGAAGCCAGAAGCTT 2919
Query 1154 AAAGCTGTTCTTGTCACATCTTTGTATCCAGAGTACTCTGAAACCTTAAAGAACATGTAT 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2920 AAAGCTGTTCTTGTCACATCTTTGTATCCAGAGTACTCTGAAACCTTAAAGAACATGTAT 2979
Query 1214 TGGGAACGACCGAGTTCAACAGGGGAGATCATTGAAGTTTATCAGCCAAGTGGAGAAAGG 1273
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2980 TGGGAACGACCGAGCTCAACAGGGGAGATCATTGAAGTTTACCAGCCAAGTGGAGAAAGG 3039
Query 1274 GTTCAACAAACAGACAAGAAGCTACACGACCAAAAGGCGCTCGCCGAGATGTATCTTCTA 1333
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 3040 GTTCAACAAACAGACAAGAAGCTTCACGACCAAAAGGCACTCGCCGAGATGTATCTTCTA 3099
Query 1334 AGTCTAACTGATAAAATAGTCACAAGTGCAAGGTCTACATTTGGATATGTTGCTCATAGT 1393
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 3100 AGTCTAACTGATAACATTGTCACAAGCGCAAGGTCTACATTTGGATATGTTGCTCATAGT 3159
Query 1394 CTTGGAGGATTAAAGCCATGGTTACTCTATCAGCCAACAGGTCCTACAGCTCCTGATCCA 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3160 CTTGGAGGATTAAAGCCATGGTTACTCTATCAGCCAACAGGTCCTACAGCTCCTGATCCA 3219
Query 1454 CCGTGTATTCAATCCACGTCGATGGACCCTTGTCACCTTACTCCTCCGTCTCATGGATGT 1513
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3220 CCGTGTATTCGATCCACGTCAATGGACCCTTGTCACCTTACTCCTCCGTCTCATGGATGT 3279
Query 1514 GAACCCGAATGGGGAACTAACTCCGGGAAGGTAGTTCCTTTTGTAAGGCATTGTGAGGAT 1573
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3280 GAACCCGAATGGGGAACTGACTCCGGGAAGGTAGTTCCTTTTGTAAGGCATTGTGAGGAT 3339
Query 1574 CGTGGGAACGATGGTCTTAAGCTATTTGATGAGTTATAG 1612
|||||||||||||| ||||||||||||||||||||||||
Sbjct 3340 CGTGGGAACGATGGGCTTAAGCTATTTGATGAGTTATAG 3378
> Ahg480406 jgi|Araly1|480406|fgenesh2_kg.3__3107__AT2G15390.2
Length=1783
Score = 1443 bits (781), Expect = 0.0
Identities = 1403/1694 (83%), Gaps = 79/1694 (5%)
Strand=Plus/Plus
Query 1 GTATCACATCTTTCAGATCTCCAGCGAAGTTTTC-AGAGCTTTTGGTTTGAAGATGAAGA 59
|||||| || |||||||||||| |||||||| || || ||||| || ||||||| ||| |
Sbjct 107 GTATCATATATTTCAGATCTCCGGCGAAGTTATCAAG-GCTTTGGGGTTGAAGACGAAAA 165
Query 60 TTCTGCTAACACTAGTCTTTAGTGGCTTACTAATTTGGTCTGTAGTGTTAGTT-TCATTC 118
||||| ||||| | ||||||||| ||||||||||| ||||||| ||||| || || |||
Sbjct 166 TTCTGATAACAGTCGTCTTTAGTACCTTACTAATTTTGTCTGTAATGTTA-TTATCGTTC 224
Query 119 TCAAACGACTTCAACAACCAACTTCTTGTTGCTAC-TTCCAACGTTTCAAGGGAATCCGA 177
|||||| |||||||||| ||||| ||| |||||| | ||||| | ||||||||
Sbjct 225 TCAAACAACTTCAACAATAAACTTTTTGCTGCTACAAT-CAACG-----A-TGAATCCGA 277
Query 178 AACACCGAGAGATAGACTGATCGGAGGGCTTTTAACCGCGGATTTCGATGAAGGTTCTTG 237
||||||| | |||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 278 AACACCGGGGGATAAACTGATAGGAGGGCTTTTAACCGCGGATTTCGATGAAGGATCTTG 337
Query 238 CTTGAGTAGGTATCAGCAATCTTTGTTGTACCGGAAGGCTTCACCGTACAAGCCTTCGGA 297
||||||||||||||| || ||| |||||||| ||| |||| || ||||||||||| ||
Sbjct 338 CTTGAGTAGGTATCATAAAAATTTCTTGTACCGCAAGCCTTCGCCATACAAGCCTTCCGA 397
Query 298 ATATCTTGTCTCTAAGCTTAGAAGTTACGAGAAGCTTCACAAGCGTTGCGGTCCAGGCAC 357
|||||| ||||||||||||||||| || |||| | ||||||| |||||||||||||| ||
Sbjct 398 ATATCTCGTCTCTAAGCTTAGAAGCTATGAGATGATTCACAAACGTTGCGGTCCAGGGAC 457
Query 358 GGATGCTTACAAGAAAGCAACAGAG-ATTCTTGGTCATGATGATGAGAAT-TA-TGCAAG 414
|||||||||||||||||||| || || ||| |||||||||| || | | || ||||||
Sbjct 458 AAATGCTTACAAGAAAGCAACAAAGCAT-CTTAGTCATGATGA-GA-ATTATAATGCAAG 514
Query 415 CAAATCTGTTGGTGAATGCAGATACATTGTGTGGGTTGCGGTTTACGGGCTTGGAAACAG 474
|| ||| | |||||||||| |||| |||||||| | |||| |||||||||||||||| |
Sbjct 515 CAGATCAGATGGTGAATGCCGATATGTTGTGTGGCTCGCGGATTACGGGCTTGGAAACCG 574
Query 475 AATACTTACTCTTGCCTCTGTCTTCCTCTACGCTCTCTTGACAGAGAGAGTTGTTCTTGT 534
| |||| |||||||| ||||| |||||||||||||||||||| || ||| | |||||||
Sbjct 575 ACTACTCACTCTTGCTTCTGTGTTCCTCTACGCTCTCTTGACTGATAGAATCATTCTTGT 634
Query 535 TGATCAAA-GCAAAGATATAAGTGATCTCTTCTGCGAGCCGTTTCCAGGTACTTCATGGT 593
||| ||| | || ||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 635 TGA-CAACCGGAAGGATATTGGTGATCTCTTATGCGAGCCATTTCCAGGTACTTCATGGT 693
Query 594 TACTTCCTCTTGAATTCCCATTGATGAAGCAGA-TTGATGGCTACAACAAGGGATACTCT 652
| ||||||||||| || ||||||||||| | | || |||| |||||||||| |||| ||
Sbjct 694 TGCTTCCTCTTGACTTTCCATTGATGAAATATACTT-ATGGATACAACAAGGAATACCCT 752
Query 653 CGTTGTTACGGAACAATGTTG-AACAATCAAGCCATCAACTCCACTTTGATCCCGCCGCA 711
|||||||| ||||||||| | || ||||| |||||||||| |||| ||||| || ||
Sbjct 753 CGTTGTTATGGAACAATGGAGGAA-AATCATTCCATCAACTCGACTTCAATCCCACCTCA 811
Query 712 TCTGTATCTTCATATTCTTCATGATTCAAGGGATAATGATAAGATGTTCTTCTGTCAAAA 771
||| ||||| |||| || |||||||||||||||| |||||||||||||||||| |||||
Sbjct 812 TCTATATCTACATAACCTCCATGATTCAAGGGATAGTGATAAGATGTTCTTCTGCCAAAA 871
Query 772 GGATCAATCTTT-AGTGGACAAAGTCCCTTGGTTGATTGTCAAAGCCAATGTCTACTTTG 830
||||||| ||| | || |||||||||||||||||||| | | ||||||||| |||||||
Sbjct 872 GGATCAAAGTTTGATTG-ACAAAGTCCCTTGGTTGATTTTTAGAGCCAATGTTTACTTTG 930
Query 831 TCCCATCTTTATGGTTGAATCCAACTTTCCAAACCGAACTAA-TGAAGCTGTTCCCGCAG 889
| |||||||||||||| |||||||| |||||| ||||||||| | |||||||| ||||||
Sbjct 931 TTCCATCTTTATGGTTTAATCCAACATTCCAAGCCGAACTAACT-AAGCTGTTTCCGCAG 989
Query 890 AAAGAAGCCGTCTTTCACCATCTCG-CTCGGTATCTTTTTCACCCGACGAATCAAGTTTG 948
|||||| ||||||||||||| || | ||||||||||||||||||| | |||||||||||
Sbjct 990 AAAGAAACCGTCTTTCACCA-CTTGGCTCGGTATCTTTTTCACCCCAAAAATCAAGTTTG 1048
Query 949 GGGCT-T-GATCAC-AAGATCCTA-CAATGC-CTACTTATC-AAGAGCAGACGAGACG-C 1001
|| | | | |||| ||| | ||| || || | ||||||| || |||||| |||| | |
Sbjct 1049 GGA-TATCG-TCACTAAG-TACTATCA-TGATC-ACTTATCCAA-AGCAGAGGAGA-GAC 1101
Query 1002 TTGGTATTCAGATACGGGTATT-CAGCGATCGAGCTGGATATTTTCAGCATGTAATGGAT 1060
| || ||||| || || || || | |||||| || |||||| | || || || |||||
Sbjct 1102 TCGGGATTCAAATTCGAGTCTTTC-GCGATCAAGGTGGATACTACCAACACGTCATGGAC 1160
Query 1061 CAGGTCGTAGCTTGTACACGAAGAGAGAACCTTTTGCCTGAACCAG-CTGCACAAGAAGA 1119
|| ||| || | || |||| ||||||||| |||||||||||| | || ||||||||||
Sbjct 1161 CAAGTCATATCATGCACACAAAGAGAGAAACTTTTGCCTGAATT-GTCTACACAAGAAGA 1219
Query 1120 ACCAAAAGTCAATATATC-AAGA-AGCCAGAAACTTAAAGCTGTTCTTGTCACATCTTTG 1177
| |||||||||| ||||| || | | ||| ||||||||||||||||||||||| ||||||
Sbjct 1220 ATCAAAAGTCAACATATCGAACACA-CCA-AAACTTAAAGCTGTTCTTGTCACTTCTTTG 1277
Query 1178 TATCCAGAGTACTCTGAAAC-CTTAAAGAACATGTATTGGGAACGACCGAGTTCAACAGG 1236
| ||| ||||||||| ||| || | ||||||||| || || ||| | | || |||||
Sbjct 1278 TCTCCTGAGTACTCTAAAAAACT-AGAGAACATGTTTTCAGAGCGATCAAATTTGACAGG 1336
Query 1237 GGAGATCATTGAAGTTTATCAGCCAAGTGGAGAAAGGGT-TCAACAAACAGACAAGAAGC 1295
||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1337 AGAGATTATTGAAGTTTATCAGCCAAGTGGAGAAAGG-TATCAACAAACAGACAAGAAGC 1395
Query 1296 TACACGACCAAAAGGCGCTCGCCGAGATGTATCTTCTAAGTCT-AACTGATAAAATAGTC 1354
|||||||||||||||||| || |||||||||||| | || || ||| ||||| || ||
Sbjct 1396 AACACGACCAAAAGGCGCTTGCTGAGATGTATCTTTTGAG-CTTAACCGATAACATTGTT 1454
Query 1355 ACAAG-TGCAAGGTCTACATTTGGATATGTTGCTCATAGTCTTGGAGGATTAAAGCCATG 1413
||||| | |||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1455 ACAAGCT-CAAGGTCTACATTTGGATATGTTGCTTATAGTCTTGGAGCATTAAAGCCATG 1513
Query 1414 GTTACTCTATCAGCCAACAGG-TC-CTACAGCTCCTGATCCACCGTGTATTCAATCCACG 1471
|||||| |||| ||||| | | || | | |||||||||||| |||||| ||| |||||||
Sbjct 1514 GTTACTTTATCTGCCAA-ATGATCTCAA-AGCTCCTGATCCGCCGTGTGTTCGATCCACG 1571
Query 1472 TCGATGGACCCTTGTCACCTTACTCCTCCGTCTCATGGATGTGAACCCGAATGGGGAACT 1531
|||||||| |||||| ||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 1572 TCGATGGAGCCTTGTTTCCTTACTCCTCCGACTCATGGATGTGATGCCGACTGGGGAACG 1631
Query 1532 -AACTCCGGGAAGGTAGTTCCTTTTGTAAGGCATTGTGAGGATCG-TGGGAACGATGGTC 1589
|| || ||||| || ||||||||||| ||| ||||||||||| |||| | | |
Sbjct 1632 GAA-TCGGGGAAAGTTGTTCCTTTTGTTAGGTATTGTGAGGATATATGGG---G--G--C 1683
Query 1590 TTAAGCTATTTGATGAGTTATAGATCTTCTTTAAT-ATAGCTGATT-CAATAGGATTGT- 1646
|||||||| |||||| |||||||| || |||| | | | ||||| || | | |||||
Sbjct 1684 TTAAGCTACATGATGAATTATAGATATTGTTTA-TCACATTTGATTTCATTTG-ATTGTT 1741
Query 1647 GAGTTATTGAAACA 1660
|| |||||||||||
Sbjct 1742 GAATTATTGAAACA 1755
> Ahg906274 jgi|Araly1|906274|Al_scaffold_0003_3402
Length=1605
Score = 1332 bits (721), Expect = 0.0
Identities = 1268/1528 (83%), Gaps = 53/1528 (3%)
Strand=Plus/Plus
Query 113 TCATTCTCAAACGACTTCAACAACCAACTTCTTGTTGCTACTTCCAACGTTTCA-AG-GG 170
|||||||||||| |||||||||||||| ||||| || ||| |||| | | | || |
Sbjct 103 TCATTCTCAAACAACTTCAACAACCAAATTCTTAATGATACAACCAAAG-AT-ATAGAAG 160
Query 171 AATCCGAAACACC-GAGAGATAGACTGATCGGAGGGCTTTTAACCGCGGATTTCGATGAA 229
||||||||| ||| | | |||| ||| || |||||||||||||| |||||||||||||||
Sbjct 161 AATCCGAAAGACCGGTG-GATAAACTTATAGGAGGGCTTTTAACTGCGGATTTCGATGAA 219
Query 230 GGTTCTTGCTTGAGTAGGTATCAGCAATCTTTGTTGTACCGGAAGGCTTCACCGTACAAG 289
|| |||||||||||||||||||| || |||| |||||||| ||| |||| || || |||
Sbjct 220 GGATCTTGCTTGAGTAGGTATCATAAAACTTTCTTGTACCGCAAGCCTTCCCCATATAAG 279
Query 290 CCTTCGGAATATCTTGTCTCTAAGCTTAGAAGTTACGAGAAGCTTCACAAGCGTTGCGGT 349
||||| |||||||| ||||||||||||||||| || |||| ||||||||| |||||||||
Sbjct 280 CCTTCTGAATATCTCGTCTCTAAGCTTAGAAGCTATGAGATGCTTCACAAACGTTGCGGT 339
Query 350 CCAGGCACGGATGCTTAC-AAGAAAGCAACAGAGATTCTTGGTCATGATGATGAGAATTA 408
|||| || | |||||| ||| |||||||||||| ||| ||| | |||||| ||||
Sbjct 340 CCAGATACAAAAGCTTACAAAG-AAGCAACAGAGAAACTTAGTC--G-CGATGAGTATTA 395
Query 409 TGCAAGCAAATCTGTTGGTGAATGCAGATACATTGTGTGGGTTGC-GGTTTACGGGCTTG 467
||||||| || | ||||||||| ||||||||||||||||| || || |||||||||||
Sbjct 396 TGCAAGCGAAGCAAATGGTGAATGTAGATACATTGTGTGGGTCGCAGG-TTACGGGCTTG 454
Query 468 GAAACAGAATACTTACTCTTGCCTCTGTCTTCCTCTACGCTCTCTTGACAGAGAGAGTTG 527
|||| ||| ||||||||||||| ||||| |||||||||||||||||||| |||||| |
Sbjct 455 GAAATAGATTACTTACTCTTGCTTCTGTGTTCCTCTACGCTCTCTTGACCGAGAGAATCA 514
Query 528 TTCTTGTTGATCAA-AGCAAAGATATAAGTGATCTCTTCTGCGAGCCGTTTCCAGGTACT 586
|||||||||| ||| |||| ||| | ||||||||||| |||||||| || |||||||||
Sbjct 515 TTCTTGTTGA-CAACCGCAAGGATGTTAGTGATCTCTTATGCGAGCCATTCCCAGGTACT 573
Query 587 TCATGGTTACTTCCTCTTGAATTCCCATTGATGAAGCAGA--T-TG-AT--GGCTACAAC 640
|||||||| ||||||||||| || ||| || |||| | | | || | ||||||||
Sbjct 574 TCATGGTTGCTTCCTCTTGACTTTCCAATGTTGAATTATACTTATGCTTGGGGCTACAAT 633
Query 641 AAGGGATACTCTCGTTGTTACGGAACAAT-GTTGAACAATCAAGCCATCAACTCCACTTT 699
|||| |||| |||||||||| |||||||| | ||| ||||| |||||||||| ||||
Sbjct 634 AAGGAATACCCTCGTTGTTATGGAACAATGGAGGAA-AATCATTCCATCAACTCGACTTC 692
Query 700 GATCCCGCCGCATCTGTATC-TTCATATTCTTCATGATTCAAGGGATAATGATAAGATGT 758
|||||||| ||||| || | | |||| || |||||||||||||||| ||||||| |||
Sbjct 693 AATCCCGCCCCATCTATA-CATGCATAACCTCCATGATTCAAGGGATAGTGATAAGTTGT 751
Query 759 TCTTCTGTCAAAAGGATCAATCTTTAG-TGGACAAAGTCCCTTGGTTGATTG-TCAAAGC 816
|| |||| |||||||||||| ||| | | |||||||||||||||||||||| || ||||
Sbjct 752 TCATCTGCCAAAAGGATCAAAGTTT-GATCGACAAAGTCCCTTGGTTGATTGTTC-AAGC 809
Query 817 CAATGTCTACTTTGTCCCATCTTTATGGTTGAATCCAACTTTCCAAACCGAACTAATGAA 876
|||||| |||||||| |||||||||||||| ||||||| |||||||||||||||| | ||
Sbjct 810 CAATGTTTACTTTGTTCCATCTTTATGGTTCAATCCAAATTTCCAAACCGAACTAGTTAA 869
Query 877 GCTGTTCCCGCAGAAAGA-AGCCGTCTTTCACCATCTCGCTCGGTATCTTTTTCACCCGA 935
|||||| ||||||||||| | |||||||||||||| | ||||||||||||||||| ||||
Sbjct 870 GCTGTTTCCGCAGAAAGACA-CCGTCTTTCACCATTTGGCTCGGTATCTTTTTCATCCGA 928
Query 936 CGAATCAAGTTTGGGGCT-TGATCAC-AAGATCCTACAATGCCT-ACTTAT-CAAGAGCA 991
| |||||||||| ||| | || |||| ||| | |||| ||| || | |||| ||| ||||
Sbjct 929 CAAATCAAGTTT-GGGATATGGTCACTAAG-TACTACGATG-CTCATTTATCCAA-AGCA 984
Query 992 GACGAGACG-CTTGGTATTCAGATACGGGTATTCAGCGATCGAGCTGGATATTTT-CAGC 1049
||||||| | ||||| ||||| |||||||| || || | | |||||| |||| || |
Sbjct 985 GACGAGA-GACTTGGGATTCAAATACGGGTTTTTGGCAAACCTTCTGGAT-TTTTCCAAC 1042
Query 1050 ATGTAATGGATCAGGTCGTAGCTTGTACACGAAGAGAGAACCTTTTGCCTGAACCAGCTG 1109
|||| ||||| || |||||||| ||||||| ||| ||||| || ||||||||| |||
Sbjct 1043 ATGTCATGGACCAAGTCGTAGCATGTACACAAAGGGAGAAACTGTTGCCTGAATTTGCTA 1102
Query 1110 CACAAGAAGAACCAAAAGTCAATATATC-AAGAAGCCAGAAACTTAAAGCTGTTCTTGTC 1168
||||||||||| ||||||||| ||||| || || || |||||||||||||||||||||
Sbjct 1103 CACAAGAAGAATTAAAAGTCAACATATCGAA-AACCCCGAAACTTAAAGCTGTTCTTGTG 1161
Query 1169 ACATCTTTGTATCCAGAGTACTCT-GAAACCTTAAAGAACATGTATTGGGAA-CGACCGA 1226
||||| | ||||||||||||||| | || ||||| |||||||| || ||| ||||| |
Sbjct 1162 GCATCTCTCTATCCAGAGTACTCTGGCAA-CTTAACGAACATGT-TTTCGAAGCGACCAA 1219
Query 1227 GTTCAACAGGGGAGATCATTGAAGTTTATCAGCCAAGTGGAGAAAGGGTTCAACAAACAG 1286
|||||||||| || || |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1220 GTTCAACAGGAGAAATTGTTGAAGTTTATCAGCCAAGTGGAGAAAGAGTTCAGCAAACAG 1279
Query 1287 ACAAGAAGCTACACGACCAAAAGGCGCTCGCCGAGATGTATCTTCTAAGTC-TAACTGAT 1345
|||||||| |||| |||||||||||||| || || ||||||||| | || | |||| |||
Sbjct 1280 ACAAGAAGATACATGACCAAAAGGCGCTTGCTGAAATGTATCTTTTGAG-CTTAACCGAT 1338
Query 1346 AAAATAGTCACAAGTGCAAGGTCTACATTTGGATATGTTGCTCATAGTCTTGGAGGATTA 1405
|| || |||||||| |||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 1339 AACATTGTCACAAGCGCAAGGTCTACATTTGGATATGTTTCTTATAGTCTTGGAGGACTA 1398
Query 1406 AAGCCATGGTTACTCTATCAGCCAAC-AGGTCCTACAGCTCCTGATCCACCGTGTATTCA 1464
| |||||||||||| ||||||||||| | | | ||| ||||| |||| |||||| |||
Sbjct 1399 AGGCCATGGTTACTTTATCAGCCAACAAATTTC-ACAACTCCTAATCCGCCGTGTGTTCG 1457
Query 1465 ATCCACGTCGATGGACCCTTGTCACCTTACTCCTCCGTCTCATGGATGTGAACCCGAATG 1524
||||| ||||||||| || ||| ||||||||||||||||||||||||||||| | || |
Sbjct 1458 ATCCAAGTCGATGGAGCCATGTTACCTTACTCCTCCGTCTCATGGATGTGAAGCTGACTC 1517
Query 1525 GGGAACTAACTCCGGGAAGGTAGTTCCTTTTGTAAGGCATTGTGAGGATCGTGGGAACGA 1584
||||| ||||| |||||| | |||||||||| ||||||||||||||| | | | |
Sbjct 1518 GGGAAAAAACTCGGGGAAGATTCTTCCTTTTGTTAGGCATTGTGAGGATATTATGTATGG 1577
Query 1585 TGGTCTTAAGCTATTTGATGAGTTATAG 1612
|| |||||||||| |||||| || |||
Sbjct 1578 GGGGCTTAAGCTATATGATGAATTTTAG 1605
> Ahg911203 jgi|Araly1|911203|Al_scaffold_0001_1457
Length=1536
Score = 880 bits (476), Expect = 0.0
Identities = 1055/1325 (80%), Gaps = 77/1325 (6%)
Strand=Plus/Plus
Query 193 ACTGATCGGAGGGCTT-TTAACCGC-GGATTTCGATGAAG-GTTCTTGCTTGAGTAGGTA 249
|||| | ||||||||| || | | |||||| |||| || |||||||| ||||||||
Sbjct 138 ACTGCTAGGAGGGCTTCTT-GCTACAGGATTT-GATG-AGAAATCTTGCTTAAGTAGGTA 194
Query 250 TCAGCAATCTTTGTTGTACCGGAAGGCTTCACCGTACAAGCCTTC-GGAATATCTTGTCT 308
| | || || | || | | ||| ||||||| ||||| || || || |||||||||||
Sbjct 195 TGATCAGTC--T-ATG-A--GCAAGCCTTCACCATACAAACCATCTGG-ATATCTTGTCT 247
Query 309 CTAAGCTTAGAAGTTACGAGAAGCTTCACAAGCGTTGCGGTCCAGGCACGGATGCTTACA 368
||||||||||||| ||||||| |||||| ||||| |||||||| ||||| | ||||||
Sbjct 248 CTAAGCTTAGAAGCTACGAGATGCTTCAAAAGCGATGCGGTCCTGGCACAAAACCTTACA 307
Query 369 AGAAAGCAACAGAG-ATTCTTGGTCATGATGATGAGAATTATGCAAGCAAATCTGTTGGT 427
||| ||| ||| || | |||||||| | | |||||| | |||| |||| ||
Sbjct 308 AGAGAGCTACAAAGCA-GCTTGGTCA-CA--A--CGAATTAAG-AAGC---TCTGATGAC 357
Query 428 GAATG-CAGATACATTGTGTGGGTTG-C--GGTTTACGGGCTTGGAAACAGAATACTTAC 483
||||| | | || |||||| || || | |||| || || ||||||||||| ||| |
Sbjct 358 GAATGTC-GGTATGTTGTGT-GGATGCCTATGTTT--GGTCTGGGAAACAGAATGCTTTC 413
Query 484 TCTTGCCTCTGTCTTCCTCTACGCTCTCTTGACAGAGAGAGTTGTTCTTGTTGATCAAAG 543
||| | ||||||||||||||| |||||||||||||| ||||| | |||||||| ||| |
Sbjct 414 TCTGGTCTCTGTCTTCCTCTATGCTCTCTTGACAGATAGAGTCATGCTTGTTGACCAACG 473
Query 544 CAAAGATATAAGTGATCTCTTCTGCGAGCCGTTTCCAGG-TACTTCATGGTTACTTCCTC 602
|| ||||||| ||| |||||||||||||| ||||| || | |||||||||||||||||
Sbjct 474 GAACGATATAACTGACCTCTTCTGCGAGCC-TTTCCCGGAAATTTCATGGTTACTTCCTC 532
Query 603 TTGAATTCCCATTGA-TGAAGCAGATTGATGGCTACAACAAGGG-ATACTCTCGTTGTTA 660
| | |||||||||| || | ||| | ||||||| |||| ||| | | || || |||||
Sbjct 533 TACATTTCCCATTGACTG-ATCAGCTAGATGGCTTCAAC-CGGGAACATTCGCGCTGTTA 590
Query 661 CGGAACAATGTTGAACAATCAAGCCATCAACTCCACTTTGATCCCGCCGCATCTGTATCT 720
||| ||||||||||| ||||| ||||| ||||| ||| || ||| | ||||| |||||
Sbjct 591 CGGCACAATGTTGAAGAATCATGCCATTAACTCAACTACAATACCGTCACATCTTTATCT 650
Query 721 TCATATTCTT-CATGATTCAAGGGATAATGATAAGATGTTCTTCTGTCAA-AAGGATCAA 778
| ||||| || |||||||| |||||| ||||||| | |||||||||| || || ||||||
Sbjct 651 TGATATT-TTCCATGATTCCAGGGATCATGATAAAAAGTTCTTCTGTGAAGAA-GATCAA 708
Query 779 TCTTTAGT-GGACAAAGTCCCTTGG-TTGATTGTCAAAGCCAATGTCTACTTTGTCCCAT 836
|||| | || |||||||||||| | | |||||||| |||| | |||||||| ||||
Sbjct 709 GCTTTCCTCGG-GAAAGTCCCTTGGCTCG-TTGTCAAATCCAACCTGTACTTTGTTCCAT 766
Query 837 CTTTATGGTTGAAT-CCAACTTTCCAAACCGAACTAATGAAGCTGTTCCCGCAGAAAGAA 895
|| ||||| || || |||| |||||||||| |||| || || || ||||| |||||||||
Sbjct 767 CTCTATGGATG-ATCCCAAGTTTCCAAACCAAACTCATCAAACTATTCCCACAGAAAGAA 825
Query 896 GCCGTCTTTCACCATCTCGCTCGGTATCTTTTTCACCCGACGAATCAAGTTTGGGGCT-T 954
|||||||||||||| | ||||| ||||||||||||||||| || ||||||||||| | |
Sbjct 826 ACCGTCTTTCACCATTTGGCTCGATATCTTTTTCACCCGACAAACCAAGTTTGGGG-TAT 884
Query 955 GATCACAAGATCCTACAATGCCTACTTATCAAGAGCAGACGAGACG-CTTGGTATTC-AG 1012
| |||| ||||| |||||||| ||||||||||||||||||| || | || || |||| ||
Sbjct 885 GGTCACTAGATCATACAATGCTTACTTATCAAGAGCAGACGCGA-GACTCGGGATTCAAG 943
Query 1013 ATACGGGTATTCAGCGATCGAGCTGGATATTTTCAGCATGTAATGGATCAGGTCGTAGCT 1072
|||| || || ||| | | ||||||||||| || || |||||||| ||| || || |
Sbjct 944 -TACGAGTGTTTAGCAAACCCGCTGGATATTTCCAACACGTAATGGACCAGATCTTATCC 1002
Query 1073 TGTACACGAAGAGAGAACCTTTTGCCTGAACCAGCTGCACAAGAAGAACCAAAAGT--C- 1129
||||||| ||||||||| || |||||||||| || ||| | ||||| || |||| |
Sbjct 1003 TGTACACAAAGAGAGAAACTGTTGCCTGAACTGGC--CAC-ACAAGAATCACAAGTCACT 1059
Query 1130 AATATATCAAGAAGC-CAGAAACTTAAAGCTGTTCTT-GTCACATCTTTGTATCCAGAGT 1187
|||| |||||||||| || ||||||||||||| |||| ||||||||| || |||||||||
Sbjct 1060 AATACATCAAGAAGCTCA-AAACTTAAAGCTG-TCTTGGTCACATCTCTGCATCCAGAGT 1117
Query 1188 ACTCTGAAACCT-TAAAGAACATG-TATTGGGAACGACCGAGTTCAACAGGGGAGATCAT 1245
|||||| | | | ||||||||||| | || ||||||||| ||||||||||| || || ||
Sbjct 1118 ACTCTG-ATCATCTAAAGAACATGCT-TTTGGAACGACCAAGTTCAACAGGAGAAATAAT 1175
Query 1246 TGAAGTTTATCAGCCAAGTGGAGAAAGGGTTCAACAAACAGACAAGAAGCTACACGACCA 1305
|||||||||||||||||||||||||| | |||| ||||||||||||||||| ||||||||
Sbjct 1176 TGAAGTTTATCAGCCAAGTGGAGAAAAGATTCAGCAAACAGACAAGAAGCTTCACGACCA 1235
Query 1306 AAAGGCGCTCGCCGAGATGTATCTTCTAAGTCTAACTGATAAAATAGTCACAAGTGCAAG 1365
|||||| || |||||||| || || ||||| ||||| ||| || | || ||||| | ||
Sbjct 1236 AAAGGCACTAGCCGAGATCTACCTCCTAAGCCTAACCGATGAACTTGTGACAAGCACGAG 1295
Query 1366 GTCTACATTTGGATATGTTGCTCATAG-TCTTGGAGGATTAAAGCCATGGTTACTCTATC 1424
|||||| ||||||||||| ||||| || ||| ||||| |||||||||||| ||||||| |
Sbjct 1296 GTCTACCTTTGGATATGTAGCTCA-AGGTCTAGGAGGGTTAAAGCCATGGATACTCTA-C 1353
Query 1425 -AGCCAACAGGTCCT-ACAGCTCCTGATCCACCGTGTATTCAAT-CCACGTCGATGGACC 1481
|||||| || | | | |||| | ||||| ||| || || ||| ||||||||| |
Sbjct 1354 GAGCCAAG-GGACAAGAAAACTCCAAACCCACCATGTGTT-AAGGCCATGTCGATGGAGC 1411
Query 1482 CTTGT 1486
|||||
Sbjct 1412 CTTGT 1416
> Ahg911202 jgi|Araly1|911202|Al_scaffold_0001_1456
Length=1032
Score = 675 bits (365), Expect = 0.0
Identities = 798/1000 (80%), Gaps = 57/1000 (6%)
Strand=Plus/Plus
Query 127 CTTCAACAACCAACTTCTTGTTGCTACTTCCAACGTTTCAAGGGAAT-CCGAAACACCGA 185
||||||| |||| |||| | |||||| |||||| ||||| ||| | |||||| |||||
Sbjct 54 CTTCAACCACCAGCTTCATAATGCTACAACCAACGGTTCAACGGATTCCCGAAA-ACCGA 112
Query 186 GAGATAGACTGATCGGAGGGCT-TTTAACCGCGGA-TTTCGATGAAGGTTCTTGCTTGAG 243
|||||| |||| | ||| |||| || || | || ||| ||||||| ||||||||||||
Sbjct 113 GAGATAAACTGTTAGGAAGGCTACTT-ACTGAAGAGTTT-GATGAAGATTCTTGCTTGAG 170
Query 244 TAGGTATCAGCAATCTTTGTTGTACCGGAAGGCTTCACCGTACAAGCC-TTCGGAATATC 302
|||||||||| |||| || || || ||| ||||||| ||||| || | | | |||||
Sbjct 171 TAGGTATCAG---TCTTCCTTTTATCGCAAGCCTTCACCATACAAACCATCCAG-ATATC 226
Query 303 TTGTCTCTAAGCTTAGAAGTTACGAGAAGCTTCACAAGCGTTGCGGTCCAGGCACGGATG 362
| ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| | |
Sbjct 227 TCGTCTCTAAGCTTAGAAGCTACGAGATGCTTCACAAGCGTTGCGGTCCTGGCACAAAAG 286
Query 363 CTTACAAGAAAGCAACAGAGATTCTTGGTCATGATGATGAGAATTATGCAAGCAAATCTG 422
||||||||||||||||||||| |||| | | ||| | |||||| ||||||||||||
Sbjct 287 CTTACAAGAAAGCAACAGAGAGTCTT-G----G-TGA--A-AATTATTCAAGCAAATCTG 337
Query 423 TTGGTGAATGCAGATACATTGTGTGGGTTGCGGTTTACGGGCTTGGAAACAGAATACTTA 482
|||||||||||||||||||||||||| |||| ||||| ||||| ||||||||| ||||||
Sbjct 338 TTGGTGAATGCAGATACATTGTGTGGATTGCTGTTTATGGGCTAGGAAACAGACTACTTA 397
Query 483 CTCTTGCCTCTGTCTTCCTCTACGCTCTCTTGACAGAGAGAGTTGTTCTTGTTGATCAAA 542
||||||| ||| | || ||||| |||||||| || || ||| | | |||||||| |||
Sbjct 398 CTCTTGCTTCTTTGTTTCTCTATGCTCTCTTAACTGACAGAATCATGCTTGTTGACCAAC 457
Query 543 GCAAAGATATAA-GTGATCTCTTCTGCGAGCCGTTTCCAGGTACTTCATGGTTACTTCCT 601
|||| || |||| | |||||||| || ||||| |||||||||||||| ||| |||| |||
Sbjct 458 GCAAGGACATAAAG-GATCTCTTATGTGAGCCTTTTCCAGGTACTTCTTGGCTACTCCCT 516
Query 602 CTTGAATTCCCATTGAT-GAAGCAGATT-GATGGCTACAACAAGGGA-TACTC-TCGTTG 657
|| || || || | | || ||| || ||| ||| | || |||| | ||| ||||||
Sbjct 517 CTGGATTTTACACTAACAGAT-CAG-TTAGATAGCTTCGACC-GGGAAT-CTCCTCGTTG 572
Query 658 TTACGGAACAATGTTGAACAATCAAGCCATCAACTCCACTTTGATC--CCGCCGCAT-C- 713
|||||||||||||||||| ||||| ||||| ||||| ||| ||| || || ||| |
Sbjct 573 TTACGGAACAATGTTGAAGAATCATGCCATTAACTCGACTACAATCATCC-CCTCATACC 631
Query 714 TGTATCTTCATATTCTTCATGATTCAAG-GGATAATGATAAGATGTTCTTCTGTCAAAAG 772
| | |||| || || ||| |||| | | |||| |||||||||||||||||||| ||||
Sbjct 632 TCTGTCTTTATCTTATTCCCGATT-ACGTGGATCATGATAAGATGTTCTTCTGTGAAAAA 690
Query 773 GATCAATCTT-T-AGT--GGACAAAGTCCCTTGGTTGAT-TGTCAAAGCCAATGTCTACT 827
|||||| ||| | | | || ||| |||||||||||| | | |||| | ||| | ||||
Sbjct 691 GATCAA-CTTCTCA-TCAGG-CAA-GTCCCTTGGTTGGTCT-TCAACTCAAATCTTTACT 745
Query 828 TTGTCCCATCTTTATGGTTGAATCCA-ACTTTCCAAACCGAACTAATG-AAGCTGTTCCC 885
| | |||||| ||||||||| ||| | ||| ||| | ||| ||| | ||||| |||||
Sbjct 746 TCATTCCATCTCTATGGTTGA-TCCCTAGTTTTCAATCTGAATTAA-GCAAGCTATTCCC 803
Query 886 GCAGAAAGAAGCCGTCTTTCACCATCTCGCTCGGTATCTTTTTCACCCGACGAATCAAGT 945
||||||||| |||||||||||||||| ||||| ||||||||||||||||| || || ||
Sbjct 804 ACAGAAAGAAACCGTCTTTCACCATCTGGCTCGCTATCTTTTTCACCCGACTAACCATGT 863
Query 946 TTGGGGCT-TGATCACAAGATCCTACAATGCCTACTTATCAAGAGCAGACGAGACG-CTT 1003
|||||| | |||||||||||||||||||||| || ||||||||||| || |||| | |||
Sbjct 864 TTGGGG-TATGATCACAAGATCCTACAATGCTTATTTATCAAGAGCTGATGAGA-GACTT 921
Query 1004 GGTATTCA-GATACGGGTATTCAGCGATCGAGCTGGATATTTTCAGCATGTAATGGATCA 1062
|| ||||| | || | || || ||| | | ||||||||||| | |||||| ||||| ||
Sbjct 922 GGAATTCAAG-TAAGAGTTTTTAGCAAGCCCGCTGGATATTTCCGGCATGTCATGGACCA 980
Query 1063 GGTCGTAGCTTGTACACGAAGAGAGAACCTTTTGCCTGAA 1102
|| |||| ||||||| ||||||||| || || ||||||
Sbjct 981 AATCTTAGCCTGTACACAAAGAGAGAAACTATTACCTGAA 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67876816590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5