BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14090.1
Length=3004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920264 jgi|Araly1|920264|scaffold_101545.1 2451 0.0
Ahg920295 jgi|Araly1|920295|scaffold_101576.1 850 0.0
> Ahg920264 jgi|Araly1|920264|scaffold_101545.1
Length=2693
Score = 2451 bits (1327), Expect = 0.0
Identities = 1901/2166 (88%), Gaps = 87/2166 (4%)
Strand=Plus/Plus
Query 53 CACAAGATCGGAAAATATCTCATGCGGGTTATCCCGATTTCATTACTCTCGCATGTGAGA 112
|||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||
Sbjct 1 CACAAGATCGGAAAATATTTCATGCGGGTTATCCCGAGTTCATTACTCTCACATGTGAGA 60
Query 113 GGATTGATTCGAAGAGCACCCTCGTCGCGATTGTACGTGGTTCCTGCACTTTCCCGGGCG 172
||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 61 GGACTGATTCGAAGAGGACCCTCTTCGCGATGGTACGTGGTTCCTGCACTTTCCCGGACG 120
Query 173 AACCCGATAATCTCATACTCGGAGCAAGTGAAAGAAGGTAACTTTGATTGTAAAGCATTT 232
||| | ||||||| |||| ||||||||||||||||||| |||||||| ||||||| ||
Sbjct 121 AACATTACAATCTCACACTCAGAGCAAGTGAAAGAAGGTACCTTTGATTATAAAGCA-TT 179
Query 233 GGAATTTAAA-GAAATTGAGCTTCTTCGAGT-TTTAGCTAGTTTGAAAGATGATCCTTAT 290
|| | ||||| ||||||| | |||||||||| || | |||| |||| ||||||||||||
Sbjct 180 GG-AGTTAAATGAAATTGGGGTTCTTCGAGTATTGA-ATAGTATGAAGGATGATCCTTAT 237
Query 291 CTTGCTTTATCGTTTCTGAAACGAATGGAAAGAAATGTGACTTTTTTGCCTAGTGTCCAA 350
||||||||||||||||| |||||||| ||| |||||||| | ||||||||||||||||
Sbjct 238 CTTGCTTTATCGTTTCTCAAACGAATTGAAGGAAATGTGGC---TTTGCCTAGTGTCCAA 294
Query 351 GCTTATGCAACTGTTATCAGAATCGTTTTTGGTTGTGGTTTGGATCAGAAATTGAATAAT 410
||||||||||||||||||||||| |||| |||||| ||||| ||||||||| || ||| |
Sbjct 295 GCTTATGCAACTGTTATCAGAATTGTTTGTGGTTGGGGTTTAGATCAGAAACTGGATACT 354
Query 411 TTTCTAGTGGAACTCGTTAGAAAAGGAGATAAAGGACGCGGATTCAGTGTCATGGATCTG 470
|||||||||||||||||||||||||||||| | |||||||| |||||||| |||||| ||
Sbjct 355 TTTCTAGTGGAACTCGTTAGAAAAGGAGATGAGGGACGCGGTTTCAGTGTTATGGATTTG 414
Query 471 TTAAAGGCCGTTGGAGAAGCAGAAGAGGAGGGAAAAGGGTCATTGCTGTTGTTGAGCA-G 529
||||||||| || | | || | || ||| | | ||||||| ||||||||| | |
Sbjct 415 TTAAAGGCCATT-G-G-AG-A-AA-TGGA--G--CA--GTCATTGGTGTTGTTGA-TACG 461
Query 530 GCTCTCCAGTGCCTTGGTTAAAGCCTATGCTAATCTTGATATGTTTGACCAAGCTATCGA 589
| |||||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 462 GGTCTCCACTGCATTGGTTAAAGCCTATGCTAATCTTGAAATGTTTGAGGAAGCTATCGA 521
Query 590 TATATTTTTCCAGAC-TAGTC---CCCTAGGGTGTGTTCCAGATATACAA-GCATTGAGT 644
||| ||||| || || || || ||||||| ||| ||| |||||| || ||||||| |
Sbjct 522 TATTTTTTTTCAAACTTA-TCATTCCCTAGGACGTGCTCCGGATATA-AAGGCATTGAAT 579
Query 645 TTTTTGATGAACCGTATGATTGCTTCTGGAGAAAAC-AATATGGCT-G-TGGCTACTTTC 701
|||||||||||||||||||||||||||| || ||| |||||| | | ||| | ||||
Sbjct 580 GTTTTGATGAACCGTATGATTGCTTCTGG-GAGAACTGATATGG-TGGTTGG-TGTTTTC 636
Query 702 AT-GCAAATAGAGCGGCTGGGGCTGGATGCGGATGCAAATACTTATGTGCTTGTGGTTCA 760
| | |||||||| ||||||| |||||||||||||| |||| |||||||| ||||||||
Sbjct 637 -TGGGAAATAGAGAGGCTGGGTTTGGATGCGGATGCACATACATATGTGCTGGTGGTTCA 695
Query 761 AGCATTGTGTAGGAATGAGGATACAA-AAGGAGTAGAGAAGCTTCTTAGTAGACTGTTAA 819
||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||||
Sbjct 696 AGCATTGTGTAGGAATGAGGATA-AAGAAGGGGTAGATAAGCTTCTTATTAGACTGTTAA 754
Query 820 ATTCAGAGCCTAGGAAAT-GTAGTGTGTTTTATATGAATTTCATTGAAGGACTCTGTTTA 878
| |||||| | ||| ||| | | ||||||||| ||||||||||||||||||| ||||||
Sbjct 755 ACTCAGAGACGAGG-AATCCTTGCGTGTTTTATTTGAATTTCATTGAAGGACTATGTTTA 813
Query 879 AATCAGATGGCAGGTATAGC-TAATCTTGTACTCCAACCATTGAGGGACGCAAATATTCT 937
|||||||||||||| || || | ||||| ||||||||||||||||||| | ||||||||
Sbjct 814 AATCAGATGGCAGGCATGGCGT-ATCTTCTACTCCAACCATTGAGGGAAGTGAATATTCT 872
Query 938 GGTGGATAAGAGTGATCTTGGAATTGCATATCGCAGAGTGGTTCGTGGTTTATGTAATGA 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GGTGGATAAGAGTGATCTTGGAATTGCATATCGCAGAGTGGTTCGTGGTTTATGTAATGA 932
Query 998 GATGAGAATAGAAGAGGCTAAAAAAGCTGTTCTTGACATGGAGGAACTTGGGATTGATCC 1057
||||||||||||||| ||| |||||||| |||||||||||||||| | |||||||||||
Sbjct 933 GATGAGAATAGAAGATGCTGAAAAAGCTTTTCTTGACATGGAGGAGCACGGGATTGATCC 992
Query 1058 GGATGTCTAT-TTTAACTCGTCCATAATTGAGGGATATCGCAAGAATCTGAATATATCT- 1115
|||||||||| ||| ||||| | |||||||||||| ||||||||| | |||||||| ||
Sbjct 993 GGATGTCTATGTTT-ACTCGGCGATAATTGAGGGACATCGCAAGACTATGAATATACCTA 1051
Query 1116 AAGCTTTGGAtttttttAACAAAATGGTGAAGAAAAGAAAAAGAATACATTGTGTGATTG 1175
||||||| ||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1052 AAGCTTTTGATATTTTTAACAAAATGGTGGAGAAAGGAAAAAGAATAAATTGTGTGATTG 1111
Query 1176 TAAGCTCAATCCTTCAATGCAT-TTGTCAGATGGGAAATTTCTC-GGAAGCTTTTGATCT 1233
||| || |||||||| ||| | ||||||||||||||||||||| || ||||| ||||||
Sbjct 1112 GAAGTTCGATCCTTCAGTGC-TGTTGTCAGATGGGAAATTTCTCAGG-AGCTTATGATCT 1169
Query 1234 GTTTAAAGAGTTTAGAGAGATGAACATTTCTCTTGATAAGGTTTGCTACAATGTTGCATT 1293
|||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 1170 GTTTGAAGAGTTTAGAGAGTTGAACATTCCTCTTGATAGGGTTTGCTACAATGTTGCATT 1229
Query 1294 TGGTGCTTTGGGAAAGCTTGGCAAAGTAGAGGAAGC---T----TGTTCCGAGAAATGAC 1346
|| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 1230 TGATGCTTTGGGAAAGCTTGGCAAAGTAGAAGAAGCTATTGAGCTGTTCCGAGAAATGAC 1289
Query 1347 GGGTAAAGGAATAGCTCCTGATGTCATCAACTACACGACATTGATAGGTGGTTGCTGTCT 1406
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1290 GGGTAAAGGAATAGCTCCTGACGTCATCAACTACACGACGTTGATAGGTGGTTGCTGTCT 1349
Query 1407 TCAAGGTTAATGTTTTGATGCCTTTAATTTGATGATTGAAATGGACGGGA-CAGGTAAAA 1465
|||||| |||||| |||||| ||| |||||||||||||||||||| ||| |||||||||
Sbjct 1350 ACAAGGTAAATGTTCTGATGCTTTTGATTTGATGATTGAAATGGAC-GGATCAGGTAAAA 1408
Query 1466 CACCTGATATTGTTATATATAACGTATTTGCTGGTGGATTGGCTAGGAATGGTCTTGTAC 1525
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1409 CACCTGATATTGTTATATATAACGTACTTGCTGGTGGATTGGCTAGGAATGGTCTTACCC 1468
Query 1526 AAGAGGCA-TTCG---C--TGAAACTAATGGAAGATCGGGGTGTAGAACCCACTTCTGTT 1579
|||||||| || | | ||||||| |||||||||||||| ||| ||||||||| ||||
Sbjct 1469 AAGAGGCACTT-GAAACTTTGAAACTGATGGAAGATCGGGGGGTAAAACCCACTTATGTT 1527
Query 1580 ACACACAACATGGTCATTGAAGGCCTGATTGTTGCAGATAAACTAGACGAGGCTGAAGCT 1639
||||| || |||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1528 ACACAAAATATGGTCATTGAAGGCCTGATTGTTGCAGGTAAACTAGACAAGGCTGAAGCT 1587
Query 1640 TTTTATGAGAGATTGGAACATAAATCTCGGGAAAATGATGCAAGTATGGTGAAAGGCTAT 1699
|| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1588 TTCTATGAGAGTTTGGAACATAAGTCTCGGGAAAATGATGCAAGTATGGTTAAAGGCTAT 1647
Query 1700 TGTGAAGCTGGCTGTCTTGATCAGGCCTTTGAACGATTCATTAGTCTGGAATGTCCTCTA 1759
|||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 1648 TGTGAAGCTGGCTGTCTTGATCAGGCATTTGAACGATTCATTAGACTGGAATTTCCTCTG 1707
Query 1760 CCCAAGAGTGTGTATTTCACACTATTCACTAGTCTTTGCGCCGAGAATG-ATTATATCAG 1818
||||||||||||||||| || |||||||||||||||||| | ||||| | || |||||||
Sbjct 1708 CCCAAGAGTGTGTATTTTACTCTATTCACTAGTCTTTGCTCTGAGAA-GAATCATATCAG 1766
Query 1819 CAAAGCTCAAGAGTTACTGGAAAGAATGTGGGAACTTGGAGTCGAACCTGAGAAGAGCAT 1878
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1767 CAAAGCTCAAGACTTACTGGATAGAATGTGGGAACTTGGAGTCGAACCTGAGAAGAGCAT 1826
Query 1879 GTATGGAAAGCTAATTGGTGCTTGGTGTCGAGTTAATAATGTGAGAGAAGCCCGGCAGAA 1938
|||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1827 GTATGGAAAGTTAATTGGTGCATGGTGTCGAGTTAATAATGTGAGAAAAGCCCGGCAGTT 1886
Query 1939 TTT--AATGTTTTAGTTGCTAGAGGA-ATGATCCCTGATTTGTACACTTTTACAGTCAT- 1994
||| || |||||||| ||| | || || ||||||||||||| ||||| ||| ||||
Sbjct 1887 TTTTGAAA-TTTTAGTTACTA-ATGAGATTATCCCTGATTTGTTCACTTACACAATCATG 1944
Query 1995 -T-AACACATACTGCCGGTTAAACGAGCTGAAGGAAGCCTATGCTCTTTTTATAAGG-AT 2051
| ||||| || ||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 1945 ATTAACACCTATTGCCGGTTAAACGAGCTGAAGCAAGCCTATGCTCTTTTTC-AAGACAT 2003
Query 2052 GAAGACAATGGGAA-TCAAACCTGATGTGGTAACATGCACAGTTTTGCTCAATAT---TC 2107
||||| | | || |||| |||||||||||||||| ||||||||| ||||||| ||
Sbjct 2004 GAAGAGGA-GAGATGTCAAGCCTGATGTGGTAACATACACAGTTTTACTCAATAGCAATC 2062
Query 2108 CAAAGTTTGATACGAAGAGGGAAATG-AAGGCCTTTGATGTTAAACCAGACGTTGTCT-A 2165
|| |||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 2063 CAGAGTTGGATATGAAGAGGGAAATGGAAG-CCTTTGATGTTAAACCAGACGTTGTCTTA 2121
Query 2166 CTACAC 2171
|||||
Sbjct 2122 -TACAC 2126
> Ahg920295 jgi|Araly1|920295|scaffold_101576.1
Length=967
Score = 850 bits (460), Expect = 0.0
Identities = 556/602 (92%), Gaps = 7/602 (1%)
Strand=Plus/Plus
Query 1858 AGTCGAACCTGAGAAGAGCATGTAT-GGAAAGCTAATTGGTGCTTGGTGTCGAGTTAATA 1916
||| ||||||| ||||||||||| | || || ||||| | ||||||||||||||||| |
Sbjct 368 AGTTGAACCTGGGAAGAGCATGTTTGGGGAA-TTAATTTGCGCTTGGTGTCGAGTTAAAA 426
Query 1917 ATGTGAGAGAAGCCCGGCAGAA-TTTAATGTTTTAGTTGCTAGAGGAATGATCCCTGATT 1975
|||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 427 ATGTGAGAAAAGCCCGGTGGAATTTTAATGTTTTAGTTGCTAGAGGAATAATCCCTGATT 486
Query 1976 TGTACACTTTTACAGTC---ATTAACACATACTGCCGGTTAAACGAGCTGAAGGAAGCCT 2032
|||||||||||||| || |||| |||| | |||||||||||||||||||| |||||||
Sbjct 487 TGTACACTTTTACAATCATGATTAGCACACATTGCCGGTTAAACGAGCTGAATGAAGCCT 546
Query 2033 ATGCTCTTTTTATAAGGATGAAGACAATGGGAATCAAACCTGATGTGGTAACATGCACAG 2092
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 547 ATGCTCTTTTTATAAGGATGAAGACGATGGGGATCAAACCTGATGTGGTAACATGCATAG 606
Query 2093 TTTTGCTCAATATTCCAAAGTTTGATACGAAGAGGGAAATGAAGGCCTTTGATGTTAAAC 2152
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 607 TTTTGCTCAATATTCCAAAGTTAGATACGAAGAGGGAAATGAAGGCCTTTGATGTTAAAC 666
Query 2153 CAGACGTTGTCTACTACACGTTTTTAATTGCTCAGCAGTGCAAGATTCAGGATCTTCAAG 2212
|||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 667 CAGACGTTGTCTACTATACGGTTTTGATTGCTCAGCAGTGCAAGATTCAGAATCTTCAAG 726
Query 2213 AGGCAGAAAGAATTTTTGCTGAAATGATTGAAAGTGGATTGGAGCCTGATGTTGTGCCTT 2272
|||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 727 AGGCGGAAAGGATCTTTGCTGAAATGATTGAAAGTGGATTGGAGCCTGATGTTGTGCCGT 786
Query 2273 ACACAGCACTAATAGCTAGTTGTTGTAGGAATGGATTCGTACATAAGGCGGTCACACTTA 2332
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ACACAGCACTAATAGCTGGTTGTTGTAGGAATGGATTCGTACATAAGGCGGTCACACTTA 846
Query 2333 TCCAAGAGATGTGGGGAAAGGGCATTGAGCCAACTACAGCTTCCCTGTCTACAGTACAGT 2392
| ||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||| |
Sbjct 847 TGCAAGAGATGTGGGAAAAGGGTATTGAGCCAACTAAAGCTTCCCTGTCTGCAGTACACT 906
Query 2393 ATGCTATATTAAAGGCCAAGAGACTTCGATCTAAAAAAGTGATCCAAGAATTTATGAAGA 2452
|||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||||
Sbjct 907 ATGCTATATTAAAGGCCAAGAGACTTCGTTCTAGAAAA-TGATCCGAGAATTTATGAAGA 965
Query 2453 GA 2454
||
Sbjct 966 GA 967
Score = 252 bits (136), Expect = 1e-65
Identities = 167/182 (92%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 444 GGACGCGGATTCAGTGTCATGGATCTGTTAAAGGCCGTTGGAGAAGCAGAAGAGGAGGGA 503
|||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 3 GGACGCGGTTTCTGTGTCATGGATTTGTTAAAGGCCGTTGGAGTAGCAGAAGAGGAGGGA 62
Query 504 AAAGGGTCATTGCTGTTGTTGAGCAGGCTCTCCAGTGCCTTGGTTAAAGCCTATGCTAAT 563
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 63 AAAGGGTCATTGCTGTTGTTGAGCAGGCTATCTAGTGCCTTGGTTAAAGCCTACGCTAAT 122
Query 564 CTTGATATGTTTGACCAAGCTATCGATATATT-TTTCCAGACTAGTCCCCTAGGGTGTGT 622
||||| ||||||||| ||||||||||||| || |||| |||||||||||||| | ||| |
Sbjct 123 CTTGAAATGTTTGACGAAGCTATCGATATTTTCTTTC-AGACTAGTCCCCTAAGATGTTT 181
Query 623 TC 624
||
Sbjct 182 TC 183
Score = 233 bits (126), Expect = 5e-60
Identities = 173/195 (89%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 698 TTTCATGCAAATAGAGCGGCTGGGGCTGGATGCGGATGCAAATACTTATGTGCTTGTGGT 757
|||| ||||||||||||||||| || ||||||||||||| || ||||||||||||||
Sbjct 180 TTTCGTGCAAATAGAGCGGCTGCGGTTGGATGCGGATGC----ACATATGTGCTTGTGGT 235
Query 758 TCAAGCATTGTGTAGGAATGAGGATACAAAAGGAGTAGAGAAGCTTCTTAGTAGACTGTT 817
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCAAGCATTGTCTAGGAATGAGGATACAAAAGGAGTAGAGAAGCTTCTTAGTAGACTGTT 295
Query 818 AAATTCAGAGCCTAGGAAA-TGTAGTGTGTTTTATATGAATTTCATTGAAGGACTCTGTT 876
||| |||||| | ||||| | | | ||||||||| ||||||||||||||||||| | |
Sbjct 296 AAACTCAGAGACGAGGAATCTTT-GCGTGTTTTATTTGAATTTCATTGAAGGACTATATC 354
Query 877 TAAATCAGATGGCAG 891
||||||||||| |||
Sbjct 355 TAAATCAGATGACAG 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113432749610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5