BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14100.1 Length=1551 Score E Sequences producing significant alignments: (Bits) Value Ahg911202 jgi|Araly1|911202|Al_scaffold_0001_1456 1312 0.0 Ahg911203 jgi|Araly1|911203|Al_scaffold_0001_1457 989 0.0 Ahg312409 jgi|Araly1|312409|fgenesh1_pm.C_scaffold_1001189 928 0.0 Ahg906274 jgi|Araly1|906274|Al_scaffold_0003_3402 706 0.0 Ahg480406 jgi|Araly1|480406|fgenesh2_kg.3__3107__AT2G15390.2 691 0.0 > Ahg911202 jgi|Araly1|911202|Al_scaffold_0001_1456 Length=1032 Score = 1312 bits (710), Expect = 0.0 Identities = 920/1018 (90%), Gaps = 28/1018 (3%) Strand=Plus/Plus Query 54 ACTCTCATTCTTCAAT-ATTTTCAATTACCAGCTTC-TGGATGCTACAACCAACGGTTCA 111 ||| ||| ||||| || || ||||| ||||||||| | |||||||||||||||||||| Sbjct 36 ACTATCAATCTTC-ATCATCTTCAACCACCAGCTTCAT-AATGCTACAACCAACGGTTCA 93 Query 112 AAGGATTCCAGGAAATCAAAG-GATAAACTGTTAGGAGGGCT-TTTAACAGCTGATTTTG 169 | ||||||| |||| | || ||||||||||||||| |||| || || | || |||| Sbjct 94 ACGGATTCC-CGAAAACCGAGAGATAAACTGTTAGGAAGGCTACTT-ACTGAAGAGTTTG 151 Query 170 ATGAAGATTCTTGCTTGAGTAGGTATGAGTCTTCCTTGTATCGCAAGCCTTCACCATACA 229 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 152 ATGAAGATTCTTGCTTGAGTAGGTATCAGTCTTCCTTTTATCGCAAGCCTTCACCATACA 211 Query 230 AACCATCCAGATATCTCGTCTCTAAGCTTAGAAGCTATGAGATGCTTCACAAGCGTTGCG 289 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 212 AACCATCCAGATATCTCGTCTCTAAGCTTAGAAGCTACGAGATGCTTCACAAGCGTTGCG 271 Query 290 GTCCAGGCACAGAAGCTTACAAGAAAGCAACGGAGATTCTTGGTCATGATGATGAGAATC 349 |||| |||||| ||||||||||||||||||| |||| |||| | | ||| | ||| Sbjct 272 GTCCTGGCACAAAAGCTTACAAGAAAGCAACAGAGAGTCTT-G----G-TGA--A-AATT 322 Query 350 ATTCAACCAAATCTGTTGGTGAATGCAGATACATTGTGTGGATTGCTGTTTATGGGCTAG 409 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 ATTCAAGCAAATCTGTTGGTGAATGCAGATACATTGTGTGGATTGCTGTTTATGGGCTAG 382 Query 410 GAAACAGAATACTTACTCTTGCTTCTCTGTTTCTCTATGCTCTCTTGACTGACAGAATCA 469 |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 383 GAAACAGACTACTTACTCTTGCTTCTTTGTTTCTCTATGCTCTCTTAACTGACAGAATCA 442 Query 470 TGCTTGTTGACCAACGTACGGACAT-AAGTGACCTCTTCTGTGAGCCTTTTCCAGGTACT 528 |||||||||||||||| | |||||| ||| || ||||| ||||||||||||||||||||| Sbjct 443 TGCTTGTTGACCAACGCAAGGACATAAAG-GATCTCTTATGTGAGCCTTTTCCAGGTACT 501 Query 529 TCCTGGCTACTCCCTCTGGATTTTCCACTAACAGATCAATTAGATAGCTTCAACAAGGAA 588 || ||||||||||||||||||||| ||||||||||||| |||||||||||| || |||| Sbjct 502 TCTTGGCTACTCCCTCTGGATTTTACACTAACAGATCAGTTAGATAGCTTCGACCGGGAA 561 Query 589 TCTCCGCGCTGTTACGGAACAATGTTGAAGAATCATGCCATTAACTCAACTACAACAGAA 648 ||||| || |||||||||||||||||||||||||||||||||||||| ||| || Sbjct 562 TCTCCTCGTTGTTACGGAACAATGTTGAAGAATCATGCCATTAACTCGACT---AC---- 614 Query 649 AGCATCATCCCCTCGTACCTCTGTCTTTATCTTATTCACGATTACGACGATTATGATAAG 708 | ||||||||||| |||||||||||||||||||||| |||||||| ||| |||||||| Sbjct 615 A--ATCATCCCCTCATACCTCTGTCTTTATCTTATTCCCGATTACGTGGATCATGATAAG 672 Query 709 ATGTTCTTCTGTGAAAGTGACCAAATTCTCATCAGGCAAGTCCCTTGGTTGGTCTTCAAC 768 |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||| Sbjct 673 ATGTTCTTCTGTGAAAAAGATCAACTTCTCATCAGGCAAGTCCCTTGGTTGGTCTTCAAC 732 Query 769 TCGAATCTTTACTTTATCCCATCTCTATGGTTGATCCCTTCTTTTCAGTCAGAATTAAGC 828 || ||||||||||| || ||||||||||||||||||||| |||||| || ||||||||| Sbjct 733 TCAAATCTTTACTTCATTCCATCTCTATGGTTGATCCCTAGTTTTCAATCTGAATTAAGC 792 Query 829 AAGCTATTCCCACAGAAAGAAACCGTCTTTCACCATTTGGCTCGCTATCTTTTTCACCCG 888 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 793 AAGCTATTCCCACAGAAAGAAACCGTCTTTCACCATCTGGCTCGCTATCTTTTTCACCCG 852 Query 889 ACTAACCAAGTTTGGGGCATGATCACAAGATCCTATAATGGTTATTTATCAAGAGCTGAT 948 |||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||| Sbjct 853 ACTAACCATGTTTGGGGTATGATCACAAGATCCTACAATGCTTATTTATCAAGAGCTGAT 912 Query 949 GAGAGACTTGGGATTCAAGTACGAGTTTTTAGCAAGCCGGCTGGATATTTCCAACATGTC 1008 ||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||| Sbjct 913 GAGAGACTTGGAATTCAAGTAAGAGTTTTTAGCAAGCCCGCTGGATATTTCCGGCATGTC 972 Query 1009 ATGGACCAGATCTTAGCCTGTACACAAAGAGAGAAACTATTACCTGAAGTGTTTGTCT 1066 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 973 ATGGACCAAATCTTAGCCTGTACACAAAGAGAGAAACTATTACCTGAAGTGTCTGTCT 1030 > Ahg911203 jgi|Araly1|911203|Al_scaffold_0001_1457 Length=1536 Score = 989 bits (535), Expect = 0.0 Identities = 1183/1483 (80%), Gaps = 96/1483 (6%) Strand=Plus/Plus Query 96 TACAACCAACGGTTCAAAGGATTCCAGGAA--ATCAAAG-GATAAACTGTTAGGAGGGCT 152 ||| |||||||||| ||| ||| | ||| | ||||| || |||||| |||||||||| Sbjct 96 TACGACCAACGGTTTAAACAATT-C-TGAACGA-CAAAGTGAGAAACTGCTAGGAGGGCT 152 Query 153 T-TT--AACAGCTGATTTTGATGAAG-ATTCTTGCTTGAGTAGGTATGAGTC-TTCCT-T 206 | || |||| || ||||||| || | |||||||| ||||||||||| || | || | Sbjct 153 TCTTGCTACAG--GA-TTTGATG-AGAAATCTTGCTTAAGTAGGTATGA-TCAGT-CTAT 206 Query 207 GTATCGCAAGCCTTCACCATACAAACCATCCAGATATCTCGTCTCTAAGCTTAGAAGCTA 266 | | ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 207 G-A--GCAAGCCTTCACCATACAAACCATCTGGATATCTTGTCTCTAAGCTTAGAAGCTA 263 Query 267 TGAGATGCTTCACAAGCGTTGCGGTCCAGGCACAGAAGCTTACAAGAAAGCAACGGAG-A 325 ||||||||||| ||||| |||||||| |||||| || ||||||||| ||| || || | Sbjct 264 CGAGATGCTTCAAAAGCGATGCGGTCCTGGCACAAAACCTTACAAGAGAGCTACAAAGCA 323 Query 326 TTCTTGGTCATGATGATGAGAATCATTCAACCAA-ATCTGTTGGTGAATG-CAGATACAT 383 |||||||| | | | | ||| || || |||| || ||||| | | || | Sbjct 324 -GCTTGGTCA-CA--A--CG-A--ATT-AA-GAAGCTCTGATGACGAATGTC-GGTATGT 371 Query 384 TGTGTGGATTG-CTGT-TTATGGGCTAGGAAACAGAATACTTACTCTTGCTTCTCTGT-T 440 |||||||| || || | || ||| || ||||||||||| ||| ||| || ||||||| | Sbjct 372 TGTGTGGA-TGCCTATGTT-TGGTCTGGGAAACAGAATGCTTTCTC-TG-GTCTCTGTCT 427 Query 441 T-CTCTATGCTCTCTTGACTGACAGAATCATGCTTGTTGACCAAC-GTACGGACATAAGT 498 | ||||||||||||||||| || ||| |||||||||||||||||| | || || |||| | Sbjct 428 TCCTCTATGCTCTCTTGACAGATAGAGTCATGCTTGTTGACCAACGGAAC-GATATAACT 486 Query 499 GACCTCTTCTGTGAGCCTTTTCCAGG-TACTTCCTGGCTACTCCCTCTGGATTTTCCACT 557 ||||||||||| ||||| ||||| || | ||| ||| |||| ||||| |||| ||| | Sbjct 487 GACCTCTTCTGCGAGCC-TTTCCCGGAAATTTCATGGTTACTTCCTCTACATTTCCCATT 545 Query 558 AACAGATCAATTAGATAGCTTCAACAAGGAATC-TCCGCGCTGTTACGGAACAATGTTGA 616 || ||||| ||||| |||||||| |||| | | ||||||||||||| |||||||||| Sbjct 546 GACTGATCAGCTAGATGGCTTCAACCGGGAA-CATTCGCGCTGTTACGGCACAATGTTGA 604 Query 617 AGAATCATGCCATTAACTCAACTACAACAGAAAGCATCATCCCCTCGTACCTCTGTCTTT 676 ||||||||||||||||||||||| ||| | | | | || | || | | | |||| Sbjct 605 AGAATCATGCCATTAACTCAACT---ACA-ATA-C--CGTCACATC-T---T-TATCTTG 652 Query 677 ATCTTATT-CACGATTACGA-CGATTATGATAAGATGTTCTTCTGTGAAAG-TGACCAA- 732 || || || || |||| | | ||| ||||||| | ||||||||||| ||| || ||| Sbjct 653 ATATT-TTCCATGATT-CCAGGGATCATGATAAAAAGTTCTTCTGTG-AAGAAGATCAAG 709 Query 733 ATTCTCATCAGGCAAGTCCCTTGGTTGGTCT-TCAACTCGAATCTTTACTTTATCCCATC 791 || || || || ||||||||||| | || | |||| || || || |||||| | ||||| Sbjct 710 CTT-TCCTCGGGAAAGTCCCTTGGCTCGT-TGTCAAATCCAACCTGTACTTTGTTCCATC 767 Query 792 TCTATGGTTGATCCCTTCTTTTC-AGTCAGAATTAAGCAAGCTATTCCCACAGAAAGAAA 850 ||||||| ||||||| ||| | | || || | | ||| ||||||||||||||||||| Sbjct 768 TCTATGGATGATCCCAAGTTTCCAAACCA-AACTCATCAAACTATTCCCACAGAAAGAAA 826 Query 851 CCGTCTTTCACCATTTGGCTCGCTATCTTTTTCACCCGACTAACCAAGTTTGGGGCATGA 910 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct 827 CCGTCTTTCACCATTTGGCTCGATATCTTTTTCACCCGACAAACCAAGTTTGGGGTATGG 886 Query 911 TCACAAGATCCTATAATGGTTATTTATCAAGAGCTGATGAGAGACTTGGGATTCAAGTAC 970 |||| ||||| || |||| ||| ||||||||||| || | |||||| ||||||||||||| Sbjct 887 TCACTAGATCATACAATGCTTACTTATCAAGAGCAGACGCGAGACTCGGGATTCAAGTAC 946 Query 971 GAGTTTTTAGCAAGCCGGCTGGATATTTCCAACATGTCATGGACCAGATCTTAGCCTGTA 1030 |||| |||||||| || ||||||||||||||||| || ||||||||||||||| |||||| Sbjct 947 GAGTGTTTAGCAAACCCGCTGGATATTTCCAACACGTAATGGACCAGATCTTATCCTGTA 1006 Query 1031 CACAAAGAGAGAAACTATTACCTGAAGTGTTTGTCTTA-GAAACACAAGTCACTAACACA 1089 |||||||||||||||| || |||||| || | | ||| ||||||||||||| ||| Sbjct 1007 CACAAAGAGAGAAACTGTTGCCTGAACTGGCCA-CACAAGAATCACAAGTCACTAATACA 1065 Query 1090 TCAAGAAGCTCGAAACTTAAAGCTGTTCTTG-TCACTTCTCTTTACCCAGAGTACTCGGA 1148 ||||||||||| |||||||||||||| |||| |||| ||||| | ||||||||||| || Sbjct 1066 TCAAGAAGCTCAAAACTTAAAGCTGT-CTTGGTCACATCTCTGCATCCAGAGTACTCTGA 1124 Query 1149 G-ATTCTAAGGCAA-ATG-TATTGGAAAGGCCCGAGTTCAACAGGAGAGATAATACAAAT 1205 || |||| | || ||| | |||||| | || |||||||||||||| ||||| || | Sbjct 1125 TCAT-CTAAAG-AACATGCTTTTGGAACGACCA-AGTTCAACAGGAGAAATAATTGAAGT 1181 Query 1206 TTACCAACCAAGTCAAGAAATATAT-CAGCAAACAGACAATAAGCTTCATGACCAAAAGG 1264 ||| || |||||| ||||| | || |||||||||||||| |||||||| |||||||||| Sbjct 1182 TTATCAGCCAAGTGGAGAAA-AGATTCAGCAAACAGACAAGAAGCTTCACGACCAAAAGG 1240 Query 1265 CACTCGCTGAGATATATCTCTTAAGTTTAACGGATTA-CATTGTCACGAGCGACTCG-TC 1322 |||| || ||||| || ||| |||| |||| ||| | | |||| || ||| || | || Sbjct 1241 CACTAGCCGAGATCTACCTCCTAAGCCTAACCGATGAAC-TTGTGACAAGC-ACGAGGTC 1298 Query 1323 TACGTTCGGATACGTTGCTCAAGGTCTTGGAGGATTAAAGCCATGGATACTCTACAAGCC 1382 ||| || ||||| || ||||||||||| ||||| ||||||||||||||||||||| |||| Sbjct 1299 TACCTTTGGATATGTAGCTCAAGGTCTAGGAGGGTTAAAGCCATGGATACTCTACGAGCC 1358 Query 1383 AAAGAACCACACAGCTCCTGAGCCACCATGTGTTC-GTGCCGTGTCAATGGAGCCATGTT 1441 || | || | | | |||| | |||||||||||| | ||| |||| |||||||| |||| Sbjct 1359 AAGGGACAAGAAAACTCCAAACCCACCATGTGTTAAG-GCCATGTCGATGGAGCCTTGTT 1417 Query 1442 TCCTTAGAGCTCCACTCTATGGTTGTCAAGCTAAGA-AAGTGAACATCACCCCTTTTGTT 1500 | |||||||| || ||| |||||||||| ||||||| || | || ||||| ||||||||| Sbjct 1418 TTCTTAGAGCACCGCTCCATGGTTGTCAGGCTAAGACAA-TCAAAATCACTCCTTTTGTT 1476 Query 1501 ATGTATTGTGAGGATCGGATCAC-GGGTCTTAAGCTAGTTGAT 1542 | || |||||||||| ||| || ||| ||||||||||||||| Sbjct 1477 AGGTTTTGTGAGGATTGGAAAACAGGG-CTTAAGCTAGTTGAT 1518 > Ahg312409 jgi|Araly1|312409|fgenesh1_pm.C_scaffold_1001189 Length=3378 Score = 928 bits (502), Expect = 0.0 Identities = 1113/1395 (80%), Gaps = 93/1395 (7%) Strand=Plus/Plus Query 95 CTACAACCAACGGTTCAAAGGATTCCAGGAA-ATCAAAGGATAAACTGTTAGGAGGGCTT 153 |||||||||||| |||||| || || | || | | | |||||||||| | ||||||||| Sbjct 1916 CTACAACCAACGTTTCAAACGAAACC-GAAACACCGAGGGATAAACTGATCGGAGGGCTT 1974 Query 154 TTAACAGCTGATTTTGATGAAGATTCTTGCTTGAGTAGGTAT--G-AGTCTTCCTTGTAT 210 |||| || ||||| ||||||| ||||||||||||||||||| | | |||| |||||| Sbjct 1975 CTAACCGCGGATTTCGATGAAGGTTCTTGCTTGAGTAGGTATCAGCAATCTTTGTTGTAT 2034 Query 211 CGCAAGCCTTCACCATACAAACCATCCAG-ATATCTCGTCTCTAAGCTTAGAAGCTATGA 269 |||||| ||||||| ||||| || | | | ||| || ||||||||||||||||||||||| Sbjct 2035 CGCAAGGCTTCACCGTACAAGCC-TTCTGAATACCTTGTCTCTAAGCTTAGAAGCTATGA 2093 Query 270 GATGCTTCACAAGCGTTGCGGTCCAGGCACAGAAGCTTACAAGAAAGCAACGGAGATTCT 329 || ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 2094 GAAGCTTCACAAGCGTTGCGGTCCAGGCACGGATGCTTACAAGAAAGCAACAGAGATTCT 2153 Query 330 TGGTCATGATGATGAGAATCATT-CAACCAAATCTGTTGGTGAATGCAGATACATTGTGT 388 ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 2154 TGGTCATGATGATGAGAATT-TTGCAAGCAAATCTGTTGGTGAATGCAGATACATTGTGT 2212 Query 389 GGATTGCTGTTTATGGGCTAGGAAACAGAATACTTACTCTTGCTTCTCTGT-TTC-TCTA 446 || |||| ||||| ||||||||||||||||| ||||||||| | |||||| ||| |||| Sbjct 2213 GGGTTGCGGTTTACGGGCTAGGAAACAGAATCCTTACTCTTTC--CTCTGTCTTCCTCTA 2270 Query 447 TGCTCTCTTGACTGACAGAATCATGCTTGTTGACCAACGTACGGACATAAGTGACCTCTT 506 ||||||||||| || ||| || | |||||||| ||| ||| || |||||||| ||||| Sbjct 2271 CGCTCTCTTGACAGAGAGAGTCGTTCTTGTTGATCAAAGTAAAGATATAAGTGATCTCTT 2330 Query 507 CTGTGAGCCTTTTCCAGGTACTTCCTGGCTACTCCCTCTGGATTTTCCACTAAC-AGATC 565 ||| ||||| |||||||||||||| ||| |||| ||||| || || ||| | | | | | Sbjct 2331 CTGCGAGCCGTTTCCAGGTACTTCATGGTTACTTCCTCTTGAATTCCCATTGATGAAA-C 2389 Query 566 A-ATTAGATAGCTTCAACAAGGAAT-CTCCGCGCTGTTACGGAACAATGTTGAAGAATCA 623 | ||| ||| | | |||| ||| || ||| || |||||||||||||||||||| ||||| Sbjct 2390 AGATT-GATGGATACAACCAGGGATACTCT-CGTTGTTACGGAACAATGTTGAACAATCA 2447 Query 624 TGCCATTAACTCAACTACAACAGAAAGCATCATCCCCTCGTACCTCTGTCTTTATCTTAT 683 ||||| ||||| ||| || || || | || | |||| |||| || || | Sbjct 2448 AGCCATCAACTCCACTTTAA---------TC--CCTC-CGCATCTCTATCTTCATATTCT 2495 Query 684 TCACGATTACGACG-ATTATGATAAGATGTTCTTCTGTGAAA-GTGACCAAA-TTCTCA- 739 ||| |||| | | | || ||||||||||||||||||| ||| | || || || | | Sbjct 2496 TCATGATT-CAAGGGATAATGATAAGATGTTCTTCTGCCAAAAG-GATCAGTCTT-T-AG 2551 Query 740 TCAGGCAA-GTCCCTTGGTTGGTCT-TCAACTCGAATCTTTACTTTATCCCATCTCTATG 797 || | ||| |||||||||||| | | |||| | ||| | |||||| | ||||||||||| Sbjct 2552 TC-GACAAAGTCCCTTGGTTGAT-TGTCAAAGCCAATGTCTACTTTGTTCCATCTCTATG 2609 Query 798 GTTGA-TCCCTTCTTTTCAGTCAGAATTAA-GCAAGCTATTCCCACAGAAAGAAACCGTC 855 ||||| ||| |||| || | ||| ||| | ||||||||||| ||||||||| | ||| Sbjct 2610 GTTGAATCCAA-CTTTCCAAACCGAACTAATG-AAGCTATTCCCGCAGAAAGAAGCTGTC 2667 Query 856 TTTCACCAT-TTGGCTCG-CTATCTTTTTCACCCGACTAACCAAGTTTGGGGCAT-GATC 912 ||||||||| ||| |||| | |||||||||| ||||| || ||||||||||| || |||| Sbjct 2668 TTTCACCATCTTG-CTCGGC-ATCTTTTTCATCCGACGAATCAAGTTTGGGG-ATTGATC 2724 Query 913 ACAAGATCCTATAATGGTTATTTATCAAGAGCTGATGAGA-GACTTGGGATTCA-AGTAC 970 ||||||||||| |||| || ||||||||||| || |||| | ||||| ||||| | ||| Sbjct 2725 ACAAGATCCTACAATGCCTACTTATCAAGAGCAGACGAGACG-CTTGGTATTCAGA-TAC 2782 Query 971 GAGTTTTT-AGCAAGCCG-GCTGGATATTTCCAACATGTCATGGACCAGATCTTAGCCTG 1028 | | | || ||||| | | ||||||||||| || ||||| ||||| ||| || |||| || Sbjct 2783 G-GATATTCAGCAATC-GAGCTGGATATTTTCAGCATGTAATGGATCAGGTCGTAGCTTG 2840 Query 1029 TACACAAAGAGAGAAACTATTACCTGAAGT-GTTTGTCTTA-GAA-A--CACAAGTCACT 1083 |||| ||||||||| || || |||||| | | | | | ||| | || |||||| | Sbjct 2841 CACACGAAGAGAGAACCTTTTGCCTGAACCAGCT-G-CACAAGAAGAATCAAAAGTCAAT 2898 Query 1084 AACACATCAAGAAGCTC-GAAACTTAAAGCTGTTCTTGTCACTTCTCTT-TACCCAGAGT 1141 | | ||||||||| | ||| |||||||||||||||||||| ||| || || ||||||| Sbjct 2899 AT-A--TCAAGAAGC-CAGAAGCTTAAAGCTGTTCTTGTCACATCT-TTGTATCCAGAGT 2953 Query 1142 ACTCGGAGATTCT-AAGGCAA-ATGTATTGGAAAGGCCCGAGTTCAACAGGAGAGATAAT 1199 |||| || | || || | || ||||||||| || | ||||| |||||||| ||||| || Sbjct 2954 ACTCTGAAAC-CTTAAAG-AACATGTATTGGGAACGACCGAGCTCAACAGGGGAGATCAT 3011 Query 1200 ACAAATTTACCAACCAAGTCAAGAAATA-TATCAGCAAACAGACAATAAGCTTCATGACC 1258 || ||||||| |||||| ||||| | ||| ||||||||||| |||||||| |||| Sbjct 3012 TGAAGTTTACCAGCCAAGTGGAGAAAGGGT-TCAACAAACAGACAAGAAGCTTCACGACC 3070 Query 1259 AAAAGGCACTCGCTGAGATATATCT-CTTAAGTTTAACGGATTACATTGTCACGAGCGAC 1317 ||||||||||||| ||||| ||||| || |||| |||| ||| |||||||||| |||| | Sbjct 3071 AAAAGGCACTCGCCGAGATGTATCTTCT-AAGTCTAACTGATAACATTGTCACAAGCG-C 3128 Query 1318 TCG-TCTACGTTCGGATACGTTGCTCA-AGGTCTTGGAGGATTAAAGCCATGGATACTCT 1375 | ||||| || ||||| |||||||| || |||||||||||||||||||||| |||||| Sbjct 3129 AAGGTCTACATTTGGATATGTTGCTCATAG-TCTTGGAGGATTAAAGCCATGGTTACTCT 3187 Query 1376 A-CAAGCCAA-AGAACCACACAGCTCCTGAGCCACCATGTGTTCG-TGCCGTGTCAATGG 1432 | || ||||| || || ||||||||||| ||||| ||| |||| | || |||||||| Sbjct 3188 ATCA-GCCAACAGGTCCT-ACAGCTCCTGATCCACCGTGTATTCGAT-CCACGTCAATGG 3244 Query 1433 AGCCATGTTTCCTTA 1447 | || ||| ||||| Sbjct 3245 ACCCTTGTCACCTTA 3259 > Ahg906274 jgi|Araly1|906274|Al_scaffold_0003_3402 Length=1605 Score = 706 bits (382), Expect = 0.0 Identities = 1071/1390 (77%), Gaps = 102/1390 (7%) Strand=Plus/Plus Query 132 GGATAAACTGT-TAGGAGGGCTTTTAACAGCTGATTTTGATGAA-GATTCTTGCTTGAGT 189 ||||||||| | |||||||||||||||| || ||||| |||||| || |||||||||||| Sbjct 177 GGATAAACT-TATAGGAGGGCTTTTAACTGCGGATTTCGATGAAGGA-TCTTGCTTGAGT 234 Query 190 AGG--T-ATGAGTCTTCCTTGTATCGCAAGCCTTCACCATACAAACCATCCAG-ATATCT 245 ||| | || | ||| |||||| ||||||||||| ||||| || || | | | |||||| Sbjct 235 AGGTATCATAAAACTTTCTTGTACCGCAAGCCTTCCCCATATAAGCC-TTCTGAATATCT 293 Query 246 CGTCTCTAAGCTTAGAAGCTATGAGATGCTTCACAAGCGTTGCGGTCCAGGCACAGAAGC 305 |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| Sbjct 294 CGTCTCTAAGCTTAGAAGCTATGAGATGCTTCACAAACGTTGCGGTCCAGATACAAAAGC 353 Query 306 TTACAA-GAAAGCAACGGAGATTCTTGGTCATGATGATGAGAATCATTCAACCAAATCTG 364 |||||| ||| ||||| |||| ||| ||| | |||||| || || ||| | || | Sbjct 354 TTACAAAGAA-GCAACAGAGAAACTTAGTC--GC-GATGAGTATTATGCAAGCGAAGCAA 409 Query 365 TTGGTGAATGCAGATACATTGTGTGGATTGCTGTTTATGGGCTAGGAAACAGAATACTTA 424 ||||||||| ||||||||||||||| | || | ||| ||||| ||||| ||| |||||| Sbjct 410 ATGGTGAATGTAGATACATTGTGTGGGTCGCAGGTTACGGGCTTGGAAATAGATTACTTA 469 Query 425 CTCTTGCTTCTCTGTTTCTCTATGCTCTCTTGACTGACAGAATCATGCTTGTTGACCAAC 484 ||||||||||| |||| ||||| ||||||||||| || |||||||| ||||||||| ||| Sbjct 470 CTCTTGCTTCTGTGTTCCTCTACGCTCTCTTGACCGAGAGAATCATTCTTGTTGAC-AAC 528 Query 485 -GTACGGACATAAGTGACCTCTTCTGTGAGCCTTTTCCAGGTACTTCCTGGCTACTCCCT 543 | | ||| | ||||| ||||| || ||||| || ||||||||||| ||| | || ||| Sbjct 529 CGCAAGGATGTTAGTGATCTCTTATGCGAGCCATTCCCAGGTACTTCATGGTTGCTTCCT 588 Query 544 CTGGATTTTCCACTAACAGA-TCA-A-TTA-GATAG---CTTCAACAAGGAAT-CTCCGC 595 || || |||||| | || | | | ||| | | | || ||| ||||||| | || | Sbjct 589 CTTGACTTTCCAATGTT-GAATTATACTTATGCTTGGGGCTACAATAAGGAATAC-CCTC 646 Query 596 GCTGTTACGGAACAATGTTG-AAGAATCATGCCATTAACTCAACTACAA-CAGAAAGCAT 653 | ||||| ||||||||| | || |||||| |||| ||||| ||| ||| | || Sbjct 647 GTTGTTATGGAACAATGGAGGAA-AATCATTCCATCAACTCGACTTCAATCCC---GCCC 702 Query 654 CATCCCCTCGTACCTCTGTCTTTATCTTATTCACGATTACGACG-ATTA-TGATAAGATG 711 |||| | ||| | | | | | || || |||| | | | || | ||||||| || Sbjct 703 CATC---TA-TACAT--G-CATAACCTC---CATGATT-CAAGGGAT-AGTGATAAGTTG 750 Query 712 TTCTTCTGTGAAA-GTGACCAAA-TTCTCATCAGGCAA-GTCCCTTGGTTGGTC-TTCAA 767 ||| |||| ||| | || |||| || | ||| | ||| |||||||||||| | ||||| Sbjct 751 TTCATCTGCCAAAAG-GATCAAAGTT-TGATC-GACAAAGTCCCTTGGTTGATTGTTCAA 807 Query 768 -CTCGAATCTTTACTTTATCCCATCTCTATGGTTGA-TCCCTTCTTTTCAGTCAGAATTA 825 | | ||| |||||||| | |||||| ||||||| | ||| ||| || | ||| || Sbjct 808 GC-C-AATGTTTACTTTGTTCCATCTTTATGGTTCAATCCAAA-TTTCCAAACCGAACTA 864 Query 826 AGC-AAGCTATTCCCACAGAAAGAAACCGTCTTTCACCATTTGGCTCGCTATCTTTTTCA 884 | ||||| || || |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 865 -GTTAAGCTGTTTCCGCAGAAAGACACCGTCTTTCACCATTTGGCTCGGTATCTTTTTCA 923 Query 885 CCCGACTAACCAAGTTTGGGGCATGATCAC-AAGATCCTATAATGGTTATTTATC-AAGA 942 ||||| || |||||||||| ||| |||| ||| | ||| ||| | ||||||| || | Sbjct 924 TCCGACAAATCAAGTTTGGGATATGGTCACTAAG-TACTACGATGCTCATTTATCCAA-A 981 Query 943 GCTGATGAGAGACTTGGGATTCAAGTACGAGTTTTTAGCAAGCCGGCTGGATATTTCCAA 1002 || || |||||||||||||||||| |||| |||||| |||| || |||||| ||||||| Sbjct 982 GCAGACGAGAGACTTGGGATTCAAATACGGGTTTTTGGCAAACCTTCTGGATTTTTCCAA 1041 Query 1003 CATGTCATGGACCA-GATCTTAGCCTGTACACAAAGAGAGAAACTATTACCTGAAGTGTT 1061 |||||||||||||| | || |||| ||||||||||| |||||||| || |||||| | || Sbjct 1042 CATGTCATGGACCAAG-TCGTAGCATGTACACAAAGGGAGAAACTGTTGCCTGAA-T-TT 1098 Query 1062 TG-T-CTTA-GAA-AC--ACAAGTCACTAACACATC-AAGAAGCTCGAAACTTAAAGCTG 1114 | | | | ||| | | |||||| | || ||| || || | ||||||||||||||| Sbjct 1099 -GCTACACAAGAAGAATTAAAAGTCA--A-CATATCGAA-AACCCCGAAACTTAAAGCTG 1153 Query 1115 TTCTTGTCACTTCTCTTTACCCAGAGTACTC-GG-AGATTCTAAGGCAA-ATGTATTGGA 1171 ||||||| | ||||| || ||||||||||| || | | | ||| | || |||| || || Sbjct 1154 TTCTTGTGGCATCTCTCTATCCAGAGTACTCTGGCA-ACT-TAACG-AACATGTTTTCGA 1210 Query 1172 AAG-GCCCGAGTTCAACAGGAGAGATAATACAAATTTACCAACCAAGTCAAGAAATA-TA 1229 | | | || |||||||||||||| || | || |||| || |||||| ||||| | | Sbjct 1211 A-GCGACCAAGTTCAACAGGAGAAATTGTTGAAGTTTATCAGCCAAGTGGAGAAAGAGT- 1268 Query 1230 TCAGCAAACAGACAATAAGCTTCATGACCAAAAGGCACTCGCTGAGATATATCTCTTAAG 1289 ||||||||||||||| ||| | |||||||||||||| || ||||| || ||||| || || Sbjct 1269 TCAGCAAACAGACAAGAAGATACATGACCAAAAGGCGCTTGCTGAAATGTATCTTTTGAG 1328 Query 1290 TTTAACGGATTACATTGTCACGAGCGACTCG-TCTACGTTCGGATACGTTGCTCA-AGGT 1347 ||||| ||| |||||||||| |||| | | ||||| || ||||| ||| || | || | Sbjct 1329 CTTAACCGATAACATTGTCACAAGCG-CAAGGTCTACATTTGGATATGTTTCTTATAG-T 1386 Query 1348 CTTGGAGGATTAAAGCCATGGATACTCTA-CAAGCCAA-AGAACCACACAGCTCCTGAGC 1405 ||||||||| ||| ||||||| |||| || || ||||| | || |||| ||||| | | Sbjct 1387 CTTGGAGGACTAAGGCCATGGTTACTTTATCA-GCCAACA-AATTTCACAACTCCTAATC 1444 Query 1406 CACCATGTGTTCG-TGCCGTGTCAATGGAGCCATGTTTCCTTAGAGCTCCA-CTCTATGG 1463 | || |||||||| | || ||| ||||||||||||| ||||| |||| ||| |||| Sbjct 1445 CGCCGTGTGTTCGAT-CCAAGTCGATGGAGCCATGTTACCTTACTCCTCCGTCTC-ATGG 1502 Query 1464 TTGTCAAGCT 1473 ||| ||||| Sbjct 1503 ATGTGAAGCT 1512 > Ahg480406 jgi|Araly1|480406|fgenesh2_kg.3__3107__AT2G15390.2 Length=1783 Score = 691 bits (374), Expect = 0.0 Identities = 1066/1385 (77%), Gaps = 107/1385 (8%) Strand=Plus/Plus Query 132 GGATAAACTGTTAGGAGGGCTTTTAACAGCTGATTTTGATGAA-GATTCTTGCTTGAGTA 190 |||||||||| |||||||||||||||| || ||||| |||||| || ||||||||||||| Sbjct 287 GGATAAACTGATAGGAGGGCTTTTAACCGCGGATTTCGATGAAGGA-TCTTGCTTGAGTA 345 Query 191 GG--T-ATGAGTCTTCCTTGTATCGCAAGCCTTCACCATACAAACCATCCAG-ATATCTC 246 || | || | || |||||| ||||||||||| |||||||| || ||| | ||||||| Sbjct 346 GGTATCATAAAAATTTCTTGTACCGCAAGCCTTCGCCATACAAGCCTTCC-GAATATCTC 404 Query 247 GTCTCTAAGCTTAGAAGCTATGAGATGCTTCACAAGCGTTGCGGTCCAGGCACAGAA-GC 305 ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| || || Sbjct 405 GTCTCTAAGCTTAGAAGCTATGAGATGATTCACAAACGTTGCGGTCCAGGGACA-AATGC 463 Query 306 TTACAAGAAAGCAACGGAG-ATTCTTGGTCATGATGATGAGA--ATCATTCAACCAAATC 362 ||||||||||||||| || || ||| |||||||||| || | || || ||| || ||| Sbjct 464 TTACAAGAAAGCAACAAAGCAT-CTTAGTCATGATGA-GA-ATTATAATGCAAGCAGATC 520 Query 363 TGTTGGTGAATGCAGATACATTGTGTGGATTGCTGTTTATGGGCTAGGAAACAGAATACT 422 | |||||||||| |||| |||||||| | || | ||| ||||| |||||| || |||| Sbjct 521 AGATGGTGAATGCCGATATGTTGTGTGGCTCGCGGATTACGGGCTTGGAAACCGACTACT 580 Query 423 TACTCTTGCTTCTCTGTTTCTCTATGCTCTCTTGACTGACAGAATCATGCTTGTTGACCA 482 |||||||||||| |||| ||||| |||||||||||||| |||||||| ||||||||| | Sbjct 581 CACTCTTGCTTCTGTGTTCCTCTACGCTCTCTTGACTGATAGAATCATTCTTGTTGAC-A 639 Query 483 AC-GTACGGACATAAGTGACCTCTTCTGTGAGCCTTTTCCAGGTACTTCCTGGCTACTCC 541 || | | ||| || |||| ||||| || ||||| |||||||||||||| ||| | || | Sbjct 640 ACCGGAAGGATATTGGTGATCTCTTATGCGAGCCATTTCCAGGTACTTCATGGTTGCTTC 699 Query 542 CTCTGGATTTTCCACTAACAGATCAAT-TAGATA-GCTT-CAACAAGGAAT-CTCCGCGC 597 |||| || |||||| | | || ||| || || | | ||||||||||| | || || Sbjct 700 CTCTTGACTTTCCATTGAT-GA--AATATACTTATGGATACAACAAGGAATAC-CCTCGT 755 Query 598 TGTTACGGAACAATGTTG-AAGAATCATGCCATTAACTCAACTACAA-CAGAAAGCATCA 655 ||||| ||||||||| | || |||||| |||| ||||| ||| ||| | | | ||| Sbjct 756 TGTTATGGAACAATGGAGGAA-AATCATTCCATCAACTCGACTTCAATCCCAC--C-TCA 811 Query 656 TCCCCTCGTACCTCTGTCTTTATCTTATTCACGATTACGACG-ATTA-TGATAAGATGTT 713 || | || ||| | | | || || |||| | | | || | |||||||||||| Sbjct 812 TC---TA-TA--TCTA-CATAACCTC---CATGATT-CAAGGGAT-AGTGATAAGATGTT 859 Query 714 CTTCTGTGAAA-GTGACCAAA-TTCTCATCAGGCAA-GTCCCTTGGTTGGTCTTCA-A-C 768 |||||| ||| | || |||| || | || | ||| |||||||||||| | || | | | Sbjct 860 CTTCTGCCAAAAG-GATCAAAGTT-TGATT-GACAAAGTCCCTTGGTTGATTTTTAGAGC 916 Query 769 TCGAATCTTTACTTTATCCCATCTCTATGGTTGA-TCCCTTCTTTTCA-GTCAGAATTAA 826 | ||| |||||||| | |||||| ||||||| | ||| | || || | | ||| ||| Sbjct 917 -C-AATGTTTACTTTGTTCCATCTTTATGGTTTAATCCAA-CATTCCAAGCC-GAACTAA 972 Query 827 GC-AAGCTATTCCCACAGAAAGAAACCGTCTTTCACCATTTGGCTCGCTATCTTTTTCAC 885 | ||||| || || ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 973 -CTAAGCTGTTTCCGCAGAAAGAAACCGTCTTTCACCACTTGGCTCGGTATCTTTTTCAC 1031 Query 886 CCGACTAACCAAGTTTGGGGCAT-GATCAC-AAGATCCTATAATGGTTATTTATC-AAGA 942 || | || |||||||||| || | |||| ||| | |||| ||| | | ||||| || | Sbjct 1032 CCCAAAAATCAAGTTTGGGATATCG-TCACTAAG-TACTATCATGATCACTTATCCAA-A 1088 Query 943 GCTGATGAGAGACTTGGGATTCAAGTACGAGTTTTTAGCAAGCC-GGCTGGATATTTCCA 1001 || || |||||||| ||||||||| | ||||| ||| || | | || |||||| | ||| Sbjct 1089 GCAGAGGAGAGACTCGGGATTCAAATTCGAGTCTTTCGCGATCAAGG-TGGATACTACCA 1147 Query 1002 ACATGTCATGGACCA-GATCTTAGCCTGTACACAAAGAGAGAAACTATTACCTGAAGTGT 1060 ||| ||||||||||| | || || | || ||||||||||||||||| || |||||| ||| Sbjct 1148 ACACGTCATGGACCAAG-TCATATCATGCACACAAAGAGAGAAACTTTTGCCTGAATTGT 1206 Query 1061 TTGTCTTA-GAA-A--CACAAGTCACTAACACATC-AAGA-AGCTCGAAACTTAAAGCTG 1114 | | | ||| | || |||||| | || ||| || | | | | ||||||||||||| Sbjct 1207 CTA-CACAAGAAGAATCAAAAGTCA--A-CATATCGAACACA-C-CAAAACTTAAAGCTG 1260 Query 1115 TTCTTGTCACTTCTCTT-TAC-CCAGAGTACTCGGAGATTCTA-AGGCAA-ATGTATTGG 1170 |||||||||||||| || | | || |||||||| | | ||| || || |||| || Sbjct 1261 TTCTTGTCACTTCT-TTGT-CTCCTGAGTACTCTAAAAAACTAGAG--AACATGTTTTC- 1315 Query 1171 AAAG-GCCCGAGTTCAACAGGAGAGATAATACAAATTTACCAACCAAGTCAAGAAATATA 1229 | || | | | || ||||||||||| || || |||| || |||||| ||||| || Sbjct 1316 AGAGCGATCAAATTTGACAGGAGAGATTATTGAAGTTTATCAGCCAAGTGGAGAAAGGTA 1375 Query 1230 TCAGCAAACAGACAATAAGCTTCATGACCAAAAGGCACTCGCTGAGATATATCTCTTAAG 1289 ||| ||||||||||| |||| || ||||||||||| || |||||||| ||||| || || Sbjct 1376 TCAACAAACAGACAAGAAGCAACACGACCAAAAGGCGCTTGCTGAGATGTATCTTTTGAG 1435 Query 1290 TTTAACGGATTACATTGTCACGAGCGACTCG-TCTACGTTCGGATACGTTGCTCA-AGGT 1347 ||||| ||| ||||||| || ||| | | ||||| || ||||| |||||| | || | Sbjct 1436 CTTAACCGATAACATTGTTACAAGCT-CAAGGTCTACATTTGGATATGTTGCTTATAG-T 1493 Query 1348 CTTGGAGGATTAAAGCCATGGATACTCTA-CAAGCCAAA-GAAC-CACACAGCTCCTGAG 1404 ||||||| ||||||||||||| |||| || | |||||| || | || | ||||||||| Sbjct 1494 CTTGGAGCATTAAAGCCATGGTTACTTTATCT-GCCAAATGATCTCA-A-AGCTCCTGAT 1550 Query 1405 CCACCATGTGTTCG-TGCCGTGTCAATGGAGCCATGTTTCCTTAGAGCTCC-ACTCTATG 1462 || || |||||||| | || ||| |||||||| |||||||||| |||| |||| ||| Sbjct 1551 CCGCCGTGTGTTCGAT-CCACGTCGATGGAGCCTTGTTTCCTTACTCCTCCGACTC-ATG 1608 Query 1463 GTTGT 1467 | ||| Sbjct 1609 GATGT 1613 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58087623625 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5