BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14110.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911203 jgi|Araly1|911203|Al_scaffold_0001_1457 1500 0.0
Ahg911202 jgi|Araly1|911202|Al_scaffold_0001_1456 726 0.0
Ahg312409 jgi|Araly1|312409|fgenesh1_pm.C_scaffold_1001189 656 0.0
Ahg484227 jgi|Araly1|484227|fgenesh2_kg.5__219__AT2G03220.1 110 4e-23
> Ahg911203 jgi|Araly1|911203|Al_scaffold_0001_1457
Length=1536
Score = 1500 bits (812), Expect = 0.0
Identities = 938/1000 (94%), Gaps = 3/1000 (0%)
Strand=Plus/Plus
Query 7 AAGCTCACGATAGCAATCGCCACTTGCTTAGTACTTTGCTTGGTGCTACTACTACCATCC 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAGCTCACGATAGCAATCGCCACTTGCTTAGTACTTTGCTTGGTGCTACTACTACCATCC 63
Query 67 TCCAACATATCCTACCGCCACAAGTATGATCTTCCAACCAACGGTTTAAATGATTCTGAA 126
|||||||| ||| ||| |||||||| ||||||| | |||||||||||||| ||||||||
Sbjct 64 TCCAACATCTCCAACCCCCACAAGTCTGATCTTACGACCAACGGTTTAAACAATTCTGAA 123
Query 127 CAACAAAGTGAGAAACTGCTAGGAGGGCTTCTTGCTACAGGGTTTGAAGAGAAATCTTGC 186
| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 124 CGACAAAGTGAGAAACTGCTAGGAGGGCTTCTTGCTACAGGATTTGATGAGAAATCTTGC 183
Query 187 TTAAGTAGGTATGATCAGTCTATGAGCAAGCCTTCACCATACAAACCATCTAGACATATT 246
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 184 TTAAGTAGGTATGATCAGTCTATGAGCAAGCCTTCACCATACAAACCATCTGGATATCTT 243
Query 247 GTTTCTAAGCTTAGAAGCTACGAGATGCTTCACAAGCGTTGCGGGCCTGGCACAAAAGCT 306
|| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct 244 GTCTCTAAGCTTAGAAGCTACGAGATGCTTCAAAAGCGATGCGGTCCTGGCACAAAACCT 303
Query 307 TACAAGAGAGCTACAAAGCAGCTTGGTCACAATGAATTAAGCAGCTCTGGTGATGAATGT 366
|||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||
Sbjct 304 TACAAGAGAGCTACAAAGCAGCTTGGTCACAACGAATTAAGAAGCTCTGATGACGAATGT 363
Query 367 CGGTATGTAGTGTGGATGCCTATGTTTGGTCTAGGAAACAGAATGCTTTCTCTGGTTTCT 426
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 364 CGGTATGTTGTGTGGATGCCTATGTTTGGTCTGGGAAACAGAATGCTTTCTCTGGTCTCT 423
Query 427 GTCTTCCTCTATGCTCTCTTGACAGATAGAGTCATGCTTGTTGACCAACGGAACGATATA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GTCTTCCTCTATGCTCTCTTGACAGATAGAGTCATGCTTGTTGACCAACGGAACGATATA 483
Query 487 ACTGACCTCTTCTGCGAGCCTTTCCCCGAAACTTCCTGGTTACTTCCTCTAGATTTTCCA 546
|||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||| |||
Sbjct 484 ACTGACCTCTTCTGCGAGCCTTTCCCGGAAATTTCATGGTTACTTCCTCTACATTTCCCA 543
Query 547 TTGAATGATCAGTTAGATAGCTTCAACAGGGAACACTCGCGATGTTACGGAACAATGTTG 606
|||| ||||||| ||||| |||||||| ||||||| ||||| |||||||| |||||||||
Sbjct 544 TTGACTGATCAGCTAGATGGCTTCAACCGGGAACATTCGCGCTGTTACGGCACAATGTTG 603
Query 607 AAGAATCATGGCATTAACTCAACTTCAATAATACCGTCACATCTTTATCTTGATATTTTC 666
|||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 604 AAGAATCATGCCATTAACTCAACTACAATA---CCGTCACATCTTTATCTTGATATTTTC 660
Query 667 CATGATTCCAGGGATCATGACAAAAAGTTCTTCTGTGAAGAAGATCAAGCTTTCCTTGAT 726
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 661 CATGATTCCAGGGATCATGATAAAAAGTTCTTCTGTGAAGAAGATCAAGCTTTCCTCGGG 720
Query 727 AAAGTCACTTGGCTCGTCGTGAAATCCAACCTTTACTTTGTTCCATCTCTATGGATGATC 786
|||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 721 AAAGTCCCTTGGCTCGTTGTCAAATCCAACCTGTACTTTGTTCCATCTCTATGGATGATC 780
Query 787 CCTAGTTTCCAAACCAAACTCATCAAACTATTCCCACAGAAAGAAACCGTCTTTCACCAT 846
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCAAGTTTCCAAACCAAACTCATCAAACTATTCCCACAGAAAGAAACCGTCTTTCACCAT 840
Query 847 TTGGCTCGCTATCTTTTTCACCCGACAAACCAAGTTTGGGGTATGGTCACTAGATCATAC 906
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGGCTCGATATCTTTTTCACCCGACAAACCAAGTTTGGGGTATGGTCACTAGATCATAC 900
Query 907 AATGCCTACTTATCAAGAGCAGACGAGAGACTTGGGATTCAAGTACGAGTTTTTAGCAAG 966
||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 901 AATGCTTACTTATCAAGAGCAGACGCGAGACTCGGGATTCAAGTACGAGTGTTTAGCAAA 960
Query 967 CCAGTTGGATATTTTCAACATGTAATGGACCAGATCTTAT 1006
|| | ||||||||| ||||| |||||||||||||||||||
Sbjct 961 CCCGCTGGATATTTCCAACACGTAATGGACCAGATCTTAT 1000
Score = 654 bits (354), Expect = 0.0
Identities = 398/420 (95%), Gaps = 0/420 (0%)
Strand=Plus/Plus
Query 1006 TACTCTGATCACCTAAAGAACATGTTTTTGGAACAAGCAAGTTCGACAGGAGAAACAATA 1065
||||||||||| |||||||||||| ||||||||| | ||||||| |||||||||| |||
Sbjct 1117 TACTCTGATCATCTAAAGAACATGCTTTTGGAACGACCAAGTTCAACAGGAGAAATAATT 1176
Query 1066 GAAGTTTATCAGCCAAGTGGAGAAAAGATTCAACAAACAGACAAGAAGCTTCACGACCAA 1125
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1177 GAAGTTTATCAGCCAAGTGGAGAAAAGATTCAGCAAACAGACAAGAAGCTTCACGACCAA 1236
Query 1126 AAGGCACTCGCCGAGATCTATCTCCTTAGCCTAACCGATGAACTTGTGACAAGCACAAGG 1185
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1237 AAGGCACTAGCCGAGATCTACCTCCTAAGCCTAACCGATGAACTTGTGACAAGCACGAGG 1296
Query 1186 TCTACATTTGGATATGTAGCTCAAGGTCTTGGAGGGTTAAAGCCATGGATACTCTACGAG 1245
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1297 TCTACCTTTGGATATGTAGCTCAAGGTCTAGGAGGGTTAAAGCCATGGATACTCTACGAG 1356
Query 1246 CCAAGGGACAAGAAAACTCCAAACCCACCATGTGTTAGGGCCATGTCGATGGAGCCTTGT 1305
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1357 CCAAGGGACAAGAAAACTCCAAACCCACCATGTGTTAAGGCCATGTCGATGGAGCCTTGT 1416
Query 1306 TTTCTTAGAGCTCCGCTCCATGGTTGTCAAGCTAAGACAATCAAAATCCCTCCTTTTGTT 1365
||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1417 TTTCTTAGAGCACCGCTCCATGGTTGTCAGGCTAAGACAATCAAAATCACTCCTTTTGTT 1476
Query 1366 AGGATTTGTGAAGATTGGAAAACAGGGCTGAAGCTAGTTGATGTTTCAGATGAACTTTGA 1425
||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1477 AGGTTTTGTGAGGATTGGAAAACAGGGCTTAAGCTAGTTGATGTCTCAGATGAACTTTGA 1536
> Ahg911202 jgi|Araly1|911202|Al_scaffold_0001_1456
Length=1032
Score = 726 bits (393), Expect = 0.0
Identities = 752/923 (81%), Gaps = 33/923 (4%)
Strand=Plus/Plus
Query 101 CAACCAACGGTTTAAATGATT-CTGAACAACAAAGTGAGAAACTGCTAGGAGGGCTTCTT 159
|||||||||||| || |||| | ||| ||| || || |||||| ||||| |||| |||
Sbjct 80 CAACCAACGGTTCAACGGATTCCCGAA-AACCGAGAGATAAACTGTTAGGAAGGCTACTT 138
Query 160 GCT-ACAGGGTTTGAAG-AGAAATCTTGCTTAAGTAGGTATGA-TCAGT-CTATGA--GC 213
|| | || |||||| | || | |||||||| ||||||||| | || | || | | ||
Sbjct 139 ACTGA-AGAGTTTGATGAAG-ATTCTTGCTTGAGTAGGTATCAGTC-TTCCTTTTATCGC 195
Query 214 AAGCCTTCACCATACAAACCATCTAGACATATTGTTTCTAAGCTTAGAAGCTACGAGATG 273
||||||||||||||||||||||| ||| || | || ||||||||||||||||||||||||
Sbjct 196 AAGCCTTCACCATACAAACCATCCAGATATCTCGTCTCTAAGCTTAGAAGCTACGAGATG 255
Query 274 CTTCACAAGCGTTGCGGGCCTGGCACAAAAGCTTACAAGAGAGCTACAAAGCAG-CTTGG 332
||||||||||||||||| |||||||||||||||||||||| ||| ||| || || |||||
Sbjct 256 CTTCACAAGCGTTGCGGTCCTGGCACAAAAGCTTACAAGAAAGCAACAGAG-AGTCTTGG 314
Query 333 TCACAATGAATT-AAGCAGCTCTGGTGATGAATGTCGG-TATGTAGTGTGGAT-GCCTAT 389
| | ||| | || ||||| |||| || |||||| | | || | |||||||| || | |
Sbjct 315 TGAAAATTA-TTCAAGCAAATCTGTTGGTGAATG-CAGATACATTGTGTGGATTGC-TGT 371
Query 390 GTT-TGGTCTAGGAAACAGAATGCTTTCTCTGGTTTCTGTCTTCCTCTATGCTCTCTTGA 448
|| ||| |||||||||||| | ||| |||| | |||| | || |||||||||||||| |
Sbjct 372 -TTATGGGCTAGGAAACAGACTACTTACTCTTGCTTCTTTGTTTCTCTATGCTCTCTTAA 430
Query 449 CAGATAGAGTCATGCTTGTTGACCAACGGAACGATATAACTGACCTCTTCTGCGAGCCTT 508
| || ||| ||||||||||||||||||| || || |||| || ||||| || |||||||
Sbjct 431 CTGACAGAATCATGCTTGTTGACCAACGCAAGGACATAAAGGATCTCTTATGTGAGCCTT 490
Query 509 TCCCCGAAACTTCCTGGTTACTTCCTCTAGATTTTCCATTGA-ATGATCAGTTAGATAGC 567
| || | ||||| ||| |||| ||||| |||||| || | | | |||||||||||||||
Sbjct 491 TTCCAGGTACTTCTTGGCTACTCCCTCTGGATTTTACACTAACA-GATCAGTTAGATAGC 549
Query 568 TTCAACAGGGAACACTCG-CGATGTTACGGAACAATGTTGAAGAATCATGGCATTAACTC 626
||| || ||||| ||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 550 TTCGACCGGGAAT-CTCCTCGTTGTTACGGAACAATGTTGAAGAATCATGCCATTAACTC 608
Query 627 AACTTCAATAATACCGTCACATCTTTATCTTGATATT-TTCCATGATTCCAG-GGATCAT 684
||| |||| || || ||| | || | |||| || || |||| |||| | | |||||||
Sbjct 609 GACTACAATCATCCCCTCATACCTCTGTCTTTATCTTATTCCC-GATTAC-GTGGATCAT 666
Query 685 GACAAAAAGTTCTTCTGTGAAGAAGATCAAGCTT-TCCTT-GATAAAGTCACTTGGCTCG 742
|| || | ||||||||||||| |||||||| ||| || | | || ||| ||||| | |
Sbjct 667 GATAAGATGTTCTTCTGTGAAAAAGATCAA-CTTCTCATCAGGCAA-GTCCCTTGGTTGG 724
Query 743 TCGTGAAATCCAACCTTTACTTTGTTCCATCTCTATGGATGATCCCTAGTTTCCAAACCA 802
|| | || || || |||||||| |||||||||||||| ||||||||||||| ||| |
Sbjct 725 TCTTCAACTCAAATCTTTACTTCATTCCATCTCTATGGTTGATCCCTAGTTTTCAATCTG 784
Query 803 AACTCATCAAACTATTCCCACAGAAAGAAACCGTCTTTCACCATTTGGCTCGCTATCTTT 862
|| | | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 785 AATTAAGCAAGCTATTCCCACAGAAAGAAACCGTCTTTCACCATCTGGCTCGCTATCTTT 844
Query 863 TTCACCCGACAAACCAAGTTTGGGGTATGGTCACTAGATCATACAATGCCTACTTATCAA 922
|||||||||| ||||| |||||||||||| |||| ||||| |||||||| || |||||||
Sbjct 845 TTCACCCGACTAACCATGTTTGGGGTATGATCACAAGATCCTACAATGCTTATTTATCAA 904
Query 923 GAGCAGACGAGAGACTTGGGATTCAAGTACGAGTTTTTAGCAAGCCAGTTGGATATTTTC 982
|||| || ||||||||||| ||||||||| |||||||||||||||| | ||||||||| |
Sbjct 905 GAGCTGATGAGAGACTTGGAATTCAAGTAAGAGTTTTTAGCAAGCCCGCTGGATATTTCC 964
Query 983 AACATGTAATGGACCAGATCTTA 1005
||||| |||||||| ||||||
Sbjct 965 GGCATGTCATGGACCAAATCTTA 987
> Ahg312409 jgi|Araly1|312409|fgenesh1_pm.C_scaffold_1001189
Length=3378
Score = 656 bits (355), Expect = 0.0
Identities = 691/848 (81%), Gaps = 43/848 (5%)
Strand=Plus/Plus
Query 181 TCTTGCTTAAGTAGGTATGA-TCAGT-CTATG-A--GCAAGCCTTCACCATACA-AACCA 234
|||||||| ||||||||| | || | || || | |||||||||| || |||| || |
Sbjct 229 TCTTGCTTGAGTAGGTATCAGTC-TTCCT-TGTATCGCAAGCCTTCGCCTTACAGAA-CT 285
Query 235 TCTAGACATAT-T-GTTTCTAAGCTTAGAAG-CTACGAGATGCTTCACAAGCGTTGCGGG 291
||| || |||| | || ||||||||||| || ||| ||| | |||||||||||||||||
Sbjct 286 TCT-GA-ATATCTAGTCTCTAAGCTTAG-AGACTATGAGCTACTTCACAAGCGTTGCGGT 342
Query 292 CCTGGCACAAAAGCTTACAAGAGAGCTACAAAGCAGCTTGGTCA-CA--AT--GAA--TT 344
|| ||||| | |||||||||| ||| ||| || |||||||||| | || ||| ||
Sbjct 343 CCAGGCACTGATGCTTACAAGAAAGCAACAGAGAAGCTTGGTCATGATCATGAGAATGTT 402
Query 345 -AAG-CAGCTCTGGTGATGAATGTC-GGTATGTAGTGTGGATGCCTATGTT-TGGTCTAG 400
|| ||||||| || |||||| | || | |||||| || || | || ||| || |
Sbjct 403 GGAGATAGCTCTGCTGGTGAATG-CAAATACATTGTGTGGGTGGCTGT-TTATGGGCTTG 460
Query 401 GAAACAGAATGCTTTCTCTGGTTTCTGTCTTCCTCTATGCTCTCTTGACAGATAGAGTCA 460
|||||||||| || |||| | |||||| ||||||||||||||||||||||| ||| |||
Sbjct 461 GAAACAGAATACTCACTCTTGCTTCTGTGTTCCTCTATGCTCTCTTGACAGAGAGAATCA 520
Query 461 TGCTTGTTGACCAACGGAACGATATAACTGACCTCTTCTGCGAGCCTTTCCCCGAAACTT 520
| ||||| |||||||| || ||||| | ||| |||||||| |||||||| || | ||||
Sbjct 521 TTCTTGTGGACCAACGCAAGGATATTAGTGATCTCTTCTGTGAGCCTTTTCCGGGTACTT 580
Query 521 CCTGGTTACTTCCTCTAGATTTTCCATTGAAT-GATCAGTTAGATAGCTTCAACAGGGAA 579
|||||||||||||||| |||||||||||| || | |||| ||||||| |||||| |||||
Sbjct 581 CCTGGTTACTTCCTCTTGATTTTCCATTG-ATGGGTCAGATAGATAGTTTCAACCGGGAA 639
Query 580 CACTCGCGA-TGTTACGGAACAATGTTGAAGAATCATGGCATTAACTCAACTTCAATAAT 638
|||||| | ||||||||||||||||||||||||||| ||||||||| || | | |||
Sbjct 640 TACTCGC-ATTGTTACGGAACAATGTTGAAGAATCATACCATTAACTCGAC-T--ACAAT 695
Query 639 ACCGTCACATCTTTATCTTGATATTTTCCATGATTCCAGGGATCATGACAAAAAGTTCTT 698
|| ||||||||||||||| || || ||||||||| ||| ||||| ||||| | ||||||
Sbjct 696 CCCATCACATCTTTATCTTCATCTTCTCCATGATTACAGAGATCAGGACAAGATGTTCTT 755
Query 699 CTGTGAAGAA-GATCAAGCTTTCCTTGATAAAGTCACTTGGCTCGTCGTGAAATCCAACC 757
||| | || |||||| |||| | || |||||| ||||||| || || ||||||||||
Sbjct 756 CTG-CCATAAGGATCAATCTTTAATCGACAAAGTCCCTTGGCTGGTTGTCAAATCCAACC 814
Query 758 TTTACTTTGTTCCATCTCTATGGATG-ATCCCTAGTTTCCAAACCAAACTCATCAAACTA 816
|||||||| |||||||||||||| || || |||||||||||| || |||||||||| |||
Sbjct 815 TTTACTTTATTCCATCTCTATGGCTGAAT-CCTAGTTTCCAACCCGAACTCATCAAGCTA 873
Query 817 TTCCCACAGAAAGAAACCGTCTTTC-ACCATTTGGCTCGCTATCTTTTTCACCCGACAAA 875
||||| |||||||| |||||| ||| |||| |||| |||||||||||||||||||||||
Sbjct 874 TTCCCGCAGAAAGACACCGTC-TTCTACCACCTGGCACGCTATCTTTTTCACCCGACAAA 932
Query 876 CCAAGTTTGGGGTATGGTCACTAGATCATACAATGCCTACTTATCAAGAGCAGACGAGAG 935
|||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 933 CCAAGTCTGGGGTATGGTCACCAGATCCTACAATGCATACTTATCAAGAGCAGACGAGAT 992
Query 936 ACTTGGGATTCAAGTACGAGTTTTTAGCAAGCCAGT-TGGATATTTTCAACATGTAATGG 994
||| ||||||||| |||| ||||| |||| | || | |||||| || || ||||||
Sbjct 993 ACTCGGGATTCAAATACGGGTTTTCAGCA-GACAAACTAAATATTTCCAGCACGTAATGA 1051
Query 995 ACCAGATC 1002
||||||||
Sbjct 1052 ACCAGATC 1059
Score = 536 bits (290), Expect = 2e-151
Identities = 738/943 (78%), Gaps = 76/943 (8%)
Strand=Plus/Plus
Query 101 CAACCAACGGTTT-AAATGATTCTG-AACAACAAAGTGAGAAACTGCTAGGAGGGCTTCT 158
|||||||| |||| ||| || | | ||| || || || |||||| | |||||||||||
Sbjct 1919 CAACCAAC-GTTTCAAACGAAACCGAAAC-ACCGAGGGATAAACTGATCGGAGGGCTTCT 1976
Query 159 TGCTACAGGGTTT-GAAG-AGAAATCTTGCTTAAGTAGGTATGATCAGTC--T-ATG-A- 211
| | || ||| || | || |||||||| ||||||||| | || || | || |
Sbjct 1977 AACCGC-GGATTTCGATGAAG-GTTCTTGCTTGAGTAGGTATCAGCAATCTTTGTTGTAT 2034
Query 212 -GCAAGCCTTCACCATACAAACCATCTAGACATA--TTGTTTCTAAGCTTAGAAGCTACG 268
||||| ||||||| ||||| || ||| || ||| |||| ||||||||||||||||| |
Sbjct 2035 CGCAAGGCTTCACCGTACAAGCCTTCT-GA-ATACCTTGTCTCTAAGCTTAGAAGCTATG 2092
Query 269 AGATGCTTCACAAGCGTTGCGGGCCTGGCACAAAAGCTTACAAGAGAGCTACAAAGCA-G 327
||| |||||||||||||||||| || ||||| | |||||||||| ||| ||| || |
Sbjct 2093 AGAAGCTTCACAAGCGTTGCGGTCCAGGCACGGATGCTTACAAGAAAGCAACAGAG-ATT 2151
Query 328 CTTGGTCA-CA--AT--GAA--TT--AAGCAGCTCTGGTGATGAATGTC-GGTATGTAGT 377
|||||||| | || ||| || ||||| |||| || |||||| | | || | ||
Sbjct 2152 CTTGGTCATGATGATGAGAATTTTGCAAGCAAATCTGTTGGTGAATG-CAGATACATTGT 2210
Query 378 GT-GGATGCCTATGTTT--GGTCTAGGAAACAGAATGCTTTCTCTGGTT--TCTGTCTTC 432
|| || || | |||| || |||||||||||||| ||| |||| || |||||||||
Sbjct 2211 GTGGGTTG-C--GGTTTACGGGCTAGGAAACAGAATCCTTACTCT--TTCCTCTGTCTTC 2265
Query 433 CTCTATGCTCTCTTGACAGATAGAGTCATGCTTGTTGACCAACGGAACGATATAACTGAC 492
||||| |||||||||||||| |||||| | |||||||| ||| | || ||||||| |||
Sbjct 2266 CTCTACGCTCTCTTGACAGAGAGAGTCGTTCTTGTTGATCAAAGTAAAGATATAAGTGAT 2325
Query 493 CTCTTCTGCGAGCC-TTTCCCCGAAACTTCCTGGTTACTTCCTCTAGATTTTCCATTGAA 551
|||||||||||||| ||| || | ||||| |||||||||||||| || || |||||| |
Sbjct 2326 CTCTTCTGCGAGCCGTTT-CCAGGTACTTCATGGTTACTTCCTCTTGAATTCCCATTG-A 2383
Query 552 TG-ATCAG-TTAGATAGCTTCAA-CAGGGAACACTCGCGATGTTACGGAACAATGTTGAA 608
|| | ||| || ||| | | ||| ||||| | |||| || ||||||||||||||||||||
Sbjct 2384 TGAAACAGATT-GATGGATACAACCAGGG-ATACTCTCGTTGTTACGGAACAATGTTGAA 2441
Query 609 GAATCATGGCATTAACTCAACTTCAATAATACCGT-CACATCTTTATCTTGATATT-TTC 666
||||| | ||| ||||| |||| |||| || | | ||||| |||||| ||||| ||
Sbjct 2442 CAATCAAGCCATCAACTCCACTT---TAAT-CCCTCCGCATCTCTATCTTCATATTCTT- 2496
Query 667 CATGATTCCAGGGATCATGACAAAAAGTTCTTCTGTGAAGAA-GATCAAG-CTTTCCTTG 724
|||||||| |||||| |||| || | ||||||||| || || |||| || |||| | |
Sbjct 2497 CATGATTCAAGGGATAATGATAAGATGTTCTTCTGCCAA-AAGGATC-AGTCTTTAGTCG 2554
Query 725 ATAAAGTCACTTGGCTCG-TCGTGAAATCCAACCTTTACTTTGTTCCATCTCTATGGATG 783
| |||||| ||||| | | | || ||| |||| | ||||||||||||||||||||| ||
Sbjct 2555 ACAAAGTCCCTTGG-TTGATTGTCAAAGCCAATGTCTACTTTGTTCCATCTCTATGGTTG 2613
Query 784 -ATCCCTAGTTTCCAAACCAAACTCATCAAACTATTCCCACAGAAAGAAACCGTCTTTCA 842
|| || | |||||||||| |||| || || |||||||| ||||||||| | ||||||||
Sbjct 2614 AAT-CCAACTTTCCAAACCGAACTAATGAAGCTATTCCCGCAGAAAGAAGCTGTCTTTCA 2672
Query 843 CCAT-TTGGCTC-GCTATCTTTTTCACCCGACAAACCAAGTTTGGGGTA-TGGTCACTAG 899
|||| || |||| || |||||||||| ||||| || ||||||||||| | || |||| ||
Sbjct 2673 CCATCTT-GCTCGGC-ATCTTTTTCATCCGACGAATCAAGTTTGGGG-ATTGATCACAAG 2729
Query 900 ATCATACAATGCCTACTTATCAAGAGCAGACGAGA-GACTTGGGATTCA-AGTACGAGTT 957
||| ||||||||||||||||||||||||||||||| | ||||| ||||| | |||| | |
Sbjct 2730 ATCCTACAATGCCTACTTATCAAGAGCAGACGAGACG-CTTGGTATTCAGA-TACG-GAT 2786
Query 958 TTT-AGCAAGCCAGTTGGATATTTTCAACATGTAATGGACCAG 999
|| ||||| | || |||||||||||| ||||||||||| |||
Sbjct 2787 ATTCAGCAATCGAGCTGGATATTTTCAGCATGTAATGGATCAG 2829
Score = 263 bits (142), Expect = 3e-69
Identities = 215/249 (86%), Gaps = 10/249 (4%)
Strand=Plus/Plus
Query 1006 TACTCTGATCACC-TAAAGAACATGTTTTTGGAACAAGCAAGTTCGACAGGAGA-AACAA 1063
|||||||| ||| |||||||||||| || ||||| | | || || ||||| || | | |
Sbjct 2953 TACTCTGA-AACCTTAAAGAACATGTATTGGGAACGACCGAGCTCAACAGGGGAGATC-A 3010
Query 1064 TAGAAGTTTATCAGCCAAGTGGAGAAAAGATTCAACAAACAGACAAGAAGCTTCACGACC 1123
| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 3011 TTGAAGTTTACCAGCCAAGTGGAGAAAGGGTTCAACAAACAGACAAGAAGCTTCACGACC 3070
Query 1124 AAAAGGCACTCGCCGAGATCTATCTCCTTAGCCTAACCGATGAAC-TTGTGACAAGCACA 1182
||||||||||||||||||| ||||| || || ||||| ||| ||| |||| |||||| ||
Sbjct 3071 AAAAGGCACTCGCCGAGATGTATCTTCTAAGTCTAACTGAT-AACATTGTCACAAGCGCA 3129
Query 1183 AGGTCTACATTTGGATATGTAGCTCA-AGGTCTTGGAGGGTTAAAGCCATGGATACTCTA 1241
|||||||||||||||||||| ||||| || ||||||||| |||||||||||| |||||||
Sbjct 3130 AGGTCTACATTTGGATATGTTGCTCATAG-TCTTGGAGGATTAAAGCCATGGTTACTCTA 3188
Query 1242 -CGAGCCAA 1249
| ||||||
Sbjct 3189 TC-AGCCAA 3196
Score = 246 bits (133), Expect = 3e-64
Identities = 256/314 (82%), Gaps = 13/314 (4%)
Strand=Plus/Plus
Query 1005 ATACTCTGATCACCTAAAGAACATGTTTTTGGAACAAGCAAGTTCGACAGGAGAAACAAT 1064
||||||| || ||||||||||||||| || ||||| ||| | | |||||||| | | |
Sbjct 1182 ATACTCTAATAACCTAAAGAACATGTATTGGGAACGCCCAACTACAACAGGAGACATAGT 1241
Query 1065 AGAAGTTTATCAGCCAAGT-GG-----A-GA-AAA-GATTCAACAAACAGACAAGAAGCT 1115
| ||||||||||||||||| || | || ||| | |||| |||||||||||||||||
Sbjct 1242 AAAAGTTTATCAGCCAAGTAGGAAAAAACGAGAAAGGTTTCAGCAAACAGACAAGAAGCT 1301
Query 1116 TCACGACCAAAAGGCACTCGCCGAGATCTATCTCCTTAGCCTAACCGATGAACTTGTGAC 1175
||||||||||||||||||||| ||||| || ||||| |||||||| ||| |||| | ||
Sbjct 1302 TCACGACCAAAAGGCACTCGCAGAGATGTACCTCCTAAGCCTAACTGATCAACTAATCAC 1361
Query 1176 AAGCACAAGGTCTACATTTGGATATGTAGCTCAAGGTCTTGGAGGGTTAAAGCCATGGAT 1235
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 AAGCTCTTCGTCAACATTTGGATATGTAGCTCAAGGTCTTGGAGGGTTAAAGCCATGGAT 1421
Query 1236 ACTCTACG-AGCCAAGGGACAAGAAAACTCCAAACCCACCATGTGTTAG-GGCCATGTCG 1293
||||||| | |||| | | |||||||| || |||||||||| | | || | ||
Sbjct 1422 ACTCTACACA-CCAAAGAAGTTCAAAACTCCTAATCCACCATGTGGTCGCGGTG-TATCC 1479
Query 1294 ATGGAGCCTTGTTT 1307
||||||||||||||
Sbjct 1480 ATGGAGCCTTGTTT 1493
> Ahg484227 jgi|Araly1|484227|fgenesh2_kg.5__219__AT2G03220.1
Length=1863
Score = 110 bits (59), Expect = 4e-23
Identities = 115/142 (81%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 1168 CTTGTGACAAGCACAAGGTCTACATTTGGATATGTAGCTCAAGGTCTTGGAGGGTTAAAG 1227
||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1486 CTTGTGACAAGTGCTTGGTCTACATTTGGATATGTAGCTCAAGGTCTTGGAGGTTTAAAG 1545
Query 1228 CCATGGATACTCTACGAGCCAAGGGA-CAAGAAAA-CTCCAAACCCACCATGTGTTAGGG 1285
|| ||||||||||| | || | || | | | | |||| | || | |||| | |||
Sbjct 1546 CCTTGGATACTCTATAAACCC-GAGAACC-GTACAGCTCCTGATCCTGCGTGTGGTCGGG 1603
Query 1286 CCATGTCGATGGAGCCTTGTTT 1307
| ||||||||||||||||||||
Sbjct 1604 CTATGTCGATGGAGCCTTGTTT 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5