BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14120.1
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334706 jgi|Araly1|334706|fgenesh1_pg.C_scaffold_1001271 1349 0.0
Ahg471571 jgi|Araly1|471571|fgenesh2_kg.1__1525__AT1G14130.1 832 0.0
> Ahg334706 jgi|Araly1|334706|fgenesh1_pg.C_scaffold_1001271
Length=966
Score = 1349 bits (730), Expect = 0.0
Identities = 867/933 (93%), Gaps = 9/933 (1%)
Strand=Plus/Plus
Query 133 AAA-TGGAGTCATTCCAACAATAGACTTGGAAGAGGTTAATGATCAGATTCTGAATGAGA 191
||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 38 AAAGTGGAGTAATTCCGACAATAGACTTGGAAGAGGTTAATGATCAAATTCTGAATCAAA 97
Query 192 AAATCCGTGAAGCGAGTGAGAGATGGGGATGTTTCACGGTGATAAACCATGGAGTTTCTT 251
|||| || |||| ||||| | |||||||||||||| | |||||||||||||||||||||
Sbjct 98 AAATTCGCCAAGCAAGTGAAAAATGGGGATGTTTCATGATGATAAACCATGGAGTTTCTT 157
Query 252 TGTCTTTGATGGCTGAGATGAAGAAGACTGTTAGAGATCTCCATGAACGTCCATATGAGA 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 158 TGTCTTTGATGGCTGAGATGAAGAAGACTGTTAGAGATCTCCATGAACGTCCATATGATA 217
Query 312 TGAAACTGCGAAACACCGATGTGTTACTAGGGAATGGTTACAAGCCTCTAAGTGAGTTCA 371
||||| || |||||||||||||||||||||| | |||||||||||| ||||||||||| |
Sbjct 218 TGAAAGTGAGAAACACCGATGTGTTACTAGGTAGTGGTTACAAGCCACTAAGTGAGTTGA 277
Query 372 ATCCTTTTTATGAATCATTTGGTCTTTTTGACATGGCATCTCCTCAAGCTGTCAATAGTT 431
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 278 ATCCTTTTTATGAATCATTTGGTAGTTTTGACATGGCATCTCCTCAAGCTGTCAATAATT 337
Query 432 TTTGTGATAAACTCGACGCCT-CGCCAGATCAAAGGGAGATTTTGCTAAAGTATGCAAAA 490
| |||||| |||| ||||||| || ||||||||||||||||| ||||||||||||| |||
Sbjct 338 TCTGTGATCAACTTGACGCCTCCG-CAGATCAAAGGGAGATTATGCTAAAGTATGCGAAA 396
Query 491 GCTACTGATGATCTTGCGAGGAGTCTAGCAAGGAGATTAGCGGAGAGCTACGGAGTGGTA 550
||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||
Sbjct 397 GCTACTGATGATCTTGCAAGGAATCTAGCAAGGAGATTAGCGGAGAGCTATGGAGTGGTG 456
Query 551 GAGCCCA-ATTTTTTGAGAGGATGGCCAAGCCAATTTCGGATGAACAAATATCATTTTAA 609
|| || | ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 457 GA-CCAACATTTTCTGAGAGGATGGCCTAGCCATTTTCGGATGAACAAATATCATTTTAA 515
Query 610 ACCGGATTCTGTTGGAAAACTCGGTGTGATATTACACACGGATCCTGGTTTCTTGACAAT 669
|||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 516 ACCGGAAGCAGTTGGAAAACTCGGTGTGAGATTACACACGGATCCTGGTTTCTTGACAAT 575
Query 670 TCTTCAAGGTGATGAGGATGTTGGTGGACTTGAAGCCATGGACAACTCTTCAGGATCCTT 729
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 576 TCTTCAAGGTGATGAGGATGTTGGTGGACTTGAAGCCATGGACAATTCTTCTGGATCCTT 635
Query 730 TTTCCCCA-TACACACATTGCCGAACACGCTTCTTGTCAACCTTGGTGACATGGCTACGA 788
|||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 636 TTTCCCCATTA-ACACATTGCCGAACACGCTTCTTGTTAACCTTGGTGACATGGCTACGA 694
Query 789 TATGGAGCAATGGAAGGTTATGCAATGTGAAGCATAGAGTGCAATGCATAGAGGCAAAAA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 695 TATGGAGCAATGGAAGGTTATGCAATGTGAAGCATAGAGTGCAATGCATAGAGGCCAAAA 754
Query 849 TGAGGATTACTATTGCTTCGTTCCTATTAGGACCAGTGGATAGAGATCTTGAAGCTCCAG 908
|||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 755 TGAGGATTACTACCGCTACCTTCCTGTTAGGACCAGTGGATAGAGATCTTGAAGCTCCAG 814
Query 909 ATGAATTTGTGGATGCTGAACATCCGCGACTATACAAGCCTATCAGTGACGGAGGACTAA 968
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 815 ATGAATTTGTGGATGCTGAACATCCGCGACTATACAAGCCTATCAGCGACGGAGGACTTA 874
Query 969 GAAAGATTAGACTTAGCAAGCATCTTCATGCTGGCGAATCTCTCAAGTTCATAACCAT-A 1027
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 875 GAAAGATTAGACTTAGCAAACATCTTCATGCTGGCGAATCTCTCAAATTTATAACCATTA 934
Query 1028 AATGAGTTAAGTGACGTCCCAAAGATAGATTAA 1060
|| || |||| |||||||||||||||| |||||
Sbjct 935 AA-GATTTAAATGACGTCCCAAAGATAAATTAA 966
> Ahg471571 jgi|Araly1|471571|fgenesh2_kg.1__1525__AT1G14130.1
Length=1086
Score = 832 bits (450), Expect = 0.0
Identities = 760/908 (84%), Gaps = 28/908 (3%)
Strand=Plus/Plus
Query 122 ATGGCGGAAGTAAATGGAGTCATTCCAACAATAGACTTGGAAGAGGTTAATGATCAGATT 181
|||| |||| |||||||||||||||| || ||||||||| |||||||| |||| |||||
Sbjct 1 ATGGAGGAACTAAATGGAGTCATTCCGACTATAGACTTGAAAGAGGTTTCTGATAAGATT 60
Query 182 CTGAATGAGAAAATCCGTGAAGCGAGTGAGAGATGGGGATGTTTCACGGTGATAAACCAT 241
|||||| ||||||||||||||||||||||||||| ||||||||||| ||| || ||||||
Sbjct 61 CTGAATCAGAAAATCCGTGAAGCGAGTGAGAGATTGGGATGTTTCAGGGTCATTAACCAT 120
Query 242 GGAGTTTCTTTGTCTTTGATGGCTGAGATGAAGAAGACTGTTAGAGATCTCCATGAACGT 301
|||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 121 GGAGTTTCACTGTCTTTGATGGCTGAGATGAAGAAGACTGTTATTGATCTCTTTCAACGT 180
Query 302 CCATATGAGATGAAACTGCGAAACACCGATGTG-TTACTAGGGAATGGTTACA-AGCCTC 359
||||| ||| |||||||||| |||||||||||| || ||||||| |||||||| ||| ||
Sbjct 181 CCATACGAGGTGAAACTGCGTAACACCGATGTGCTT-CTAGGGAGTGGTTACAGAGC-TC 238
Query 360 TAAGTGAGTTCAATCCTTTTTATGAATCATTTGGTCTTTTTGACATGGCATCTCCTCAAG 419
|| ||| ||||||||| |||||| |||| ||||| | ||| ||||| ||||||||||
Sbjct 239 CAAATGAAATCAATCCTTACTATGAAGCATTAGGTCTCTATGATATGGCTTCTCCTCAAG 298
Query 420 CTGTCAATAGTTTTTGTGATAAACTCGACGCCTC-GCCAGATCAAAGGGAGATTTTGCTA 478
||||||||| |||||||| ||||||| || || || ||||||||||||||| || ||
Sbjct 299 CTGTCAATACCTTTTGTGACCAACTCGAAGCTTCTGCG-GATCAAAGGGAGATTATGGTA 357
Query 479 AAGTATGCAAAAGCTACTGA-TG-ATCTTGCGA-GGAGTCTAGCAAGGAGATTAGCGGAG 535
|||||||| ||||||| | | || | ||||| | ||| | ||| ||||||||||| |||
Sbjct 358 AAGTATGCGAAAGCTA-TCAATGGA-CTTGCAACGGATT-TAGTGAGGAGATTAGCAGAG 414
Query 536 AGCTACGGAG-TGGTAGAGCCCAATTTTTTGAGAGGATGGCCAAGCCAATTTCGGATGAA 594
|| ||||| | |||| ||| || | ||||| | ||||||||| ||||| |||||||| ||
Sbjct 415 AGTTACGG-GCTGGTTGAGACCGACTTTTTCAAAGGATGGCCTAGCCAGTTTCGGATTAA 473
Query 595 CAAATATCATTTTAAACCGGATTCTGTTGGAAAACTCGGTGTG-ATATTACACACGGATC 653
|||||||||||||||||| || |||| || |||||||||||| | |||||||||||||
Sbjct 474 CAAATATCATTTTAAACCCGAAACTGTCGGGAAACTCGGTGTGCA-ATTACACACGGATT 532
Query 654 CTGGTTTCTTGACAATTCTTCAAGGTGATGAGGATGTTGGTGGACTTGAAGCCATGGACA 713
| || |||||||| |||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 533 CAGGGTTCTTGACGATTCTTCAAGATGATGAAAATGTTGGTGGACTTGAAGCTGTGGACA 592
Query 714 ACTCTTCAGGATCCTTTTTCCCCATACACACATTGCCGAACACGCTT-CTTGTCAACCTT 772
||||||||| |||||||||| ||| || | ||||| ||||| ||| || |||||||
Sbjct 593 GTTCTTCAGGAACCTTTTTCCCTATAGACCCGTTGCCAAACACACTTGCTA-TCAACCTC 651
Query 773 GGTGACATGGCTACGATATGGAGCAATGGAAGGTTATGCAATGTGAAGCATAGAGTGCAA 832
|| ||||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 652 GGGGACATGGCTACGATATGGAGCAATGGAAGATTGTGCACTGTGAAGCATAGAGTGCAA 711
Query 833 TGCATAGAGGCAAAAATGAGG-ATTACTATTGCTTCGTTCCTATTAGGACCAGTGGATAG 891
|||| ||| |||| ||||||| ||| |||| || |||||| ||||||||||| || |||
Sbjct 712 TGCAAAGAAGCAACAATGAGGTATT-CTATCGCCTCGTTCTTATTAGGACCAATGAATAC 770
Query 892 AGATCTTG-AAGCTCCA-GATGAATTTGTGGATGCTGAACATCCGCGACTATACAAGCCT 949
|||| ||| || ||||| | ||| ||||||||||| ||||||||| || |||||||||||
Sbjct 771 AGAT-TTGGAACCTCCAAG-TGAGTTTGTGGATGCAGAACATCCGAGATTATACAAGCCT 828
Query 950 ATCAGTGACGGAGG-ACTAAGAAAGATTAGACTTAGCAAGCATCTT-CATGCTGGCGAAT 1007
|| ||| || ||| | || |||| |||||| | | ||| | || |||| ||| |||
Sbjct 829 ATTAGTCACAAAGGGA-TACGAAATATTAGAATGACCAAAAAA-TTGCATGATGGAGAAG 886
Query 1008 CTCTCAAG 1015
||||||||
Sbjct 887 CTCTCAAG 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44413198305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5