BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14130.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471571 jgi|Araly1|471571|fgenesh2_kg.1__1525__AT1G14130.1 1701 0.0
Ahg334706 jgi|Araly1|334706|fgenesh1_pg.C_scaffold_1001271 749 0.0
> Ahg471571 jgi|Araly1|471571|fgenesh2_kg.1__1525__AT1G14130.1
Length=1086
Score = 1701 bits (921), Expect = 0.0
Identities = 1035/1090 (95%), Gaps = 8/1090 (1%)
Strand=Plus/Plus
Query 157 ATGGGGGAACTAAACGGAGTCATCATTCCGACTATAGACTTGGAAGAGGTTTCTGATAAG 216
|||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGAGGAACTAAATGGAG---TCATTCCGACTATAGACTTGAAAGAGGTTTCTGATAAG 57
Query 217 ATTCTGAATCAGAAAATCCGTGAAGCCAGTGAGAGATGGGGATGTTTCAGGGTGATAAAC 276
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |||
Sbjct 58 ATTCTGAATCAGAAAATCCGTGAAGCGAGTGAGAGATTGGGATGTTTCAGGGTCATTAAC 117
Query 277 CATGGAGTTTCATTGTCTTTGATGGCTGAGATGAAGAAGACTGTTATTGATCTCTTTCAA 336
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CATGGAGTTTCACTGTCTTTGATGGCTGAGATGAAGAAGACTGTTATTGATCTCTTTCAA 177
Query 337 CGTCCATACGAGGTGAAAGTGCGTAACACCGATGTGCTCCTAGGGAGTGGTTACAGAGCT 396
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 CGTCCATACGAGGTGAAACTGCGTAACACCGATGTGCTTCTAGGGAGTGGTTACAGAGCT 237
Query 397 CCAAACGAAATCAATCCTTACTATGAAGCATTAGGTCTCTATGACATGGCTTCTCCTCAT 456
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 CCAAATGAAATCAATCCTTACTATGAAGCATTAGGTCTCTATGATATGGCTTCTCCTCAA 297
Query 457 GCTGTCAATACCTTTTGTGACCAACTCGAAGCTTCTGCAGATCAAAGGGAGATTATGGTG 516
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 GCTGTCAATACCTTTTGTGACCAACTCGAAGCTTCTGCGGATCAAAGGGAGATTATGGTA 357
Query 517 AAGTATGCGAAGGCTATCAATGGACTTGCAACGGATTTAGCGAGGAAATTAGCAGAGAGT 576
||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 358 AAGTATGCGAAAGCTATCAATGGACTTGCAACGGATTTAGTGAGGAGATTAGCAGAGAGT 417
Query 577 TACGGGCTGGTTGAGACCGACTTTTTCAAAGAATGGCCGAGCCAGTTTCGGATTAACAAA 636
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 418 TACGGGCTGGTTGAGACCGACTTTTTCAAAGGATGGCCTAGCCAGTTTCGGATTAACAAA 477
Query 637 TATCATTTTAAACCCGAAACAGTCGGGAAACTCGGTGTGCAACTACACACGGATTCAGGG 696
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 478 TATCATTTTAAACCCGAAACTGTCGGGAAACTCGGTGTGCAATTACACACGGATTCAGGG 537
Query 697 TTCTTGACGATTCTTCAAGATGATGAAAATGTTGGTGGACTTGAAGCTATGGACAATTCT 756
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 538 TTCTTGACGATTCTTCAAGATGATGAAAATGTTGGTGGACTTGAAGCTGTGGACAGTTCT 597
Query 757 TCAGGAACCTTTTTCCCCATAGACCCGTTGCCAAACACGCTTGCTATCAACCTCGGGGAC 816
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 TCAGGAACCTTTTTCCCTATAGACCCGTTGCCAAACACACTTGCTATCAACCTCGGGGAC 657
Query 817 ATGGCTACGATATGGAGCAACGGAAGATTGTGCAATGTGAAGCATAGAGTGCAATGCAAA 876
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 658 ATGGCTACGATATGGAGCAATGGAAGATTGTGCACTGTGAAGCATAGAGTGCAATGCAAA 717
Query 877 GAAGCAACAATGAGGTATTCCATCGCCTCGTTCTTATTAGGACCAATGGATACAGATTTG 936
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 718 GAAGCAACAATGAGGTATTCTATCGCCTCGTTCTTATTAGGACCAATGAATACAGATTTG 777
Query 937 GAACCTCCAAGTGAGTTTGTGGATGCAGAACATCCGCGACTATACAAGCCTATTAGTCAC 996
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 778 GAACCTCCAAGTGAGTTTGTGGATGCAGAACATCCGAGATTATACAAGCCTATTAGTCAC 837
Query 997 GAAGGGGTACGAAATATTAGAATGACTAAAAAATTGCATGATGGAGAAGCTCTCAAGCTT 1056
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 AAAGGGATACGAAATATTAGAATGACCAAAAAATTGCATGATGGAGAAGCTCTCAAGCTT 897
Query 1057 ATAACCCATGCAGG-ACTAGATAAATGACCTAAATGGCATTTTAAGATGGTAGCGCTATG 1115
||| | |||| ||| | ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 898 ATAGCTCATGAAGGGA-TAGATAAATGATCTAAAAGGCATTTTAAGATGGTAGCGCTATG 956
Query 1116 GAGCCAGAAAACAGCAATTTCTTACCTAAGAATGAGAAATAAAGA-TGTATTAAA-ATGT 1173
|| || |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 957 GAACCTGAAAACTGCAATTTCTTACCTAAGAATGAGAAATAAAGAATGTATTAAAGATGT 1016
Query 1174 ATTACCTATTGGATTGTTGCAATATATGATCTTTTT-TACCTTGAGATCTTTGTGGATGC 1232
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 1017 ATTACCTATTGGATTGTTGCAATATATGAAATTTTTCTACCTAGAGATCTTTGTGGATGA 1076
Query 1233 AATACTACTA 1242
||||||||||
Sbjct 1077 AATACTACTA 1086
> Ahg334706 jgi|Araly1|334706|fgenesh1_pg.C_scaffold_1001271
Length=966
Score = 749 bits (405), Expect = 0.0
Identities = 746/905 (82%), Gaps = 46/905 (5%)
Strand=Plus/Plus
Query 181 ATTCCGACTATAGACTTGGAAGAGGTTTCTGAT-AAGATTCTGAATCAGAAAATCCGTGA 239
|||||||| |||||||||||||||||| |||| || ||||||||||| ||||| || |
Sbjct 49 ATTCCGACAATAGACTTGGAAGAGGTTAATGATCAA-ATTCTGAATCAAAAAATTCGCCA 107
Query 240 AGCCAGTGAGAGATGGGGATGTTTCAGGGTGATAAACCATGGAGTTTCATTGTCTTTGAT 299
||| ||||| | |||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 108 AGCAAGTGAAAAATGGGGATGTTTCATGATGATAAACCATGGAGTTTCTTTGTCTTTGAT 167
Query 300 GGCTGAGATGAAGAAGACTGTTATTGATCTCTTTCAACGTCCATACGAGGTGAAAGTGCG 359
||||||||||||||||||||||| |||||| | |||||||||| || |||||||| |
Sbjct 168 GGCTGAGATGAAGAAGACTGTTAGAGATCTCCATGAACGTCCATATGATATGAAAGTGAG 227
Query 360 TAACACCGATGTGCTCCTAGGGAGTGGTTACAGAGCTC-CAAAC-GAAATCAATCCTTAC 417
|||||||||||| | ||||| |||||||||| ||| | | || || | |||||||
Sbjct 228 AAACACCGATGTGTTACTAGGTAGTGGTTACA-AGC-CACTAAGTGAGTTGAATCCTTTT 285
Query 418 TATGAAGCATTAGGTC-TCTATGACATGGCTTCTCCTCATGCTGTCAATACCTTT-TGTG 475
|||||| |||| ||| | | ||||||||| |||||||| |||||||||| ||| ||||
Sbjct 286 TATGAATCATTTGGTAGTTT-TGACATGGCATCTCCTCAAGCTGTCAATAA-TTTCTGTG 343
Query 476 ACCAACTCGAAGCTTCTGCAGATCAAAGGGAGATTATGGTGAAGTATGCGAAGGCTA-TC 534
| ||||| || || || ||||||||||||||||||||| | ||||||||||| |||| |
Sbjct 344 ATCAACTTGACGCCTCCGCAGATCAAAGGGAGATTATGCTAAAGTATGCGAAAGCTACTG 403
Query 535 AATGGA-CTTGCAACGGATT-TAGCGAGGAAATTAGCAGAGAGTTACGG-GCTGGTTGAG 591
| || | ||||||| ||| | |||| |||| |||||| ||||| || || | |||| | |
Sbjct 404 A-TG-ATCTTGCAA-GGAATCTAGCAAGGAGATTAGCGGAGAGCTATGGAG-TGGT-G-G 457
Query 592 ACCGACTTTTTCAAAGA--ATGGCCGAGCCAGTTTCGGATTAACAAATATCATTTTAAAC 649
||| || ||||| ||| |||||| ||||| |||||||| |||||||||||||||||||
Sbjct 458 ACCAACATTTTCTGAGAGGATGGCCTAGCCATTTTCGGATGAACAAATATCATTTTAAAC 517
Query 650 CCGAAACAGTCGGGAAACTCGGTGTGCA-ACTACACACGGATTCAGGGTTCTTGACGATT 708
| ||| |||| || |||||||||||| | | ||||||||||| | || |||||||| |||
Sbjct 518 CGGAAGCAGTTGGAAAACTCGGTGTG-AGATTACACACGGATCCTGGTTTCTTGACAATT 576
Query 709 CTTCAAGATGATGAAAATGTTGGTGGACTTGAAGCTATGGACAATTCTTCAGGAACCTTT 768
||||||| |||||| ||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 577 CTTCAAGGTGATGAGGATGTTGGTGGACTTGAAGCCATGGACAATTCTTCTGGATCCTTT 636
Query 769 TTCCCCAT-AGACCCGTTGCCAAACACGCTTGCTA-TCAACCTCGGGGACATGGCTACGA 826
|||||||| | || | ||||| ||||||||| || | ||||| || |||||||||||||
Sbjct 637 TTCCCCATTA-ACACATTGCCGAACACGCTT-CTTGTTAACCTTGGTGACATGGCTACGA 694
Query 827 TATGGAGCAACGGAAGATTGTGCAATGTGAAGCATAGAGTGCAATGCAAAGAAGC-AACA 885
|||||||||| ||||| || |||||||||||||||||||||||||||| ||| || || |
Sbjct 695 TATGGAGCAATGGAAGGTTATGCAATGTGAAGCATAGAGTGCAATGCATAGAGGCCAA-A 753
Query 886 ATGAGGTATTCC-ATCGCCT-CGTTCTTATTAGGACCAATGGATACAGAT-TTGGAACCT 942
|||||| ||| | | ||| | | ||| | ||||||||| |||||| |||| ||| || ||
Sbjct 754 ATGAGG-ATTACTACCGC-TACCTTCCTGTTAGGACCAGTGGATAGAGATCTTG-AAGCT 810
Query 943 CCA-AGTGAGTTTGTGGATGCAGAACATCCGCGACTATACAAGCCTATTAGTC-ACGAAG 1000
||| | ||| ||||||||||| |||||||||||||||||||||||||| || | ||| ||
Sbjct 811 CCAGA-TGAATTTGTGGATGCTGAACATCCGCGACTATACAAGCCTATCAG-CGACGGAG 868
Query 1001 GGGT-ACGAAATATTAGAATGA-CTAAAAAA-TTGCATGATGGAGAAGCTCTCAAGCTTA 1057
| | | |||| |||||| | | | ||| | || |||| ||| ||| ||||||| |||
Sbjct 869 GACTTA-GAAAGATTAGACTTAGC-AAACATCTT-CATGCTGGCGAATCTCTCAAATTTA 925
Query 1058 TAACC 1062
|||||
Sbjct 926 TAACC 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5