BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14140.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334708 jgi|Araly1|334708|fgenesh1_pg.C_scaffold_1001273 1461 0.0
> Ahg334708 jgi|Araly1|334708|fgenesh1_pg.C_scaffold_1001273
Length=918
Score = 1461 bits (791), Expect = 0.0
Identities = 877/919 (95%), Gaps = 4/919 (0%)
Strand=Plus/Plus
Query 32 ATGGAGCGGAGCCGAGTGACCAGAGAAGCACCGACCGGAACCAGGATCCTGCTTGCTTCA 91
|||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAGCGGAGCCGAGTGGCCGGAGAAGCACCGACCGGAACCAGGATCCTGCTTGCGTCA 60
Query 92 CTCTCTGCGATGGTTGCAGAGTCAGTTACGTTTCCGATTGATCTCAC-AAAGACTAGAAT 150
|| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 61 CTATCTGCGATGGTCGCAGAGTCAGTTACGTTTCCGATTGATCTCACTAAA-ACTAGAAT 119
Query 151 GCAGCTCCATGGTTCGGGATCCGCTTCTGGTGCGCATCGGATTGGCGCTTTCGGAGTCGT 210
||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||
Sbjct 120 GCAGCTCCATGGTTCGGGATCTGCTTCTGGTACGCACCGGATTGGCGCTATCGGAGTCGT 179
Query 211 ATCGGAGATTGCGAGAAAGGAAGGAGTGATTGGTCTCTACAAAGGTCTATCTCCGGCGAT 270
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 180 ATCGGAGATTGCGAGGAAGGAAGGAGTTATTGGTCTCTATAAAGGTCTATCTCCGGCGAT 239
Query 271 TATCAGACACCTGTTCTACACGCCTATCAGAATCATTGGATACGAGAATTTGAAAGGACT 330
|||||||||| ||||||||||||| || || ||||||||||||||||||||||||||| |
Sbjct 240 TATCAGACACATGTTCTACACGCCAATAAGGATCATTGGATACGAGAATTTGAAAGGATT 299
Query 331 CATCGTCAGATCTGAAACTAACAATAGCGAGTCTCTTCCTCTCGCCACAAAGGCTCTCGT 390
|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 300 CATCGTCAGATCTGAAACTAACAACGGCGAGTCTCTTTCTCTGGCCACAAAGGCTCTCGT 359
Query 391 CGGAGGATTTTCTGGTGTTATAGCTCAGGTAGTGGCTAGTCCAGCTGATTTGGTCAAAGT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGGAGGATTTTCTGGTGTTATAGCTCAGGTAGTGGCTAGTCCAGCTGATTTGGTCAAAGT 419
Query 451 GAGAATGCAAGCAGATGGTAGATTGGTGAGCCAAGGCCTGAAACCGAGGTACTCGGGACC 510
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GAGAATGCAAGCAGATGGTAGATTGGTGAGCCAAGGCCTGAAACCGAGATACTCGGGACC 479
Query 511 AATCGAGGCTTTTACCAAAATCCTACAATCAGAAGGAGTAAAAGGGT-TATGGAAAGGTG 569
|||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 480 AATCGAAGCTTTCACCAAAATCCTACAATCAGAAGGAGTAAAA-GGTCTATGGAAAGGTG 538
Query 570 TTCTTCCAAACATCCAGAGAGCATTTCTAGTGAATATGGGAGAACTAGCTTGCTATGATC 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCTTCCAAACATCCAGAGAGCATTTCTAGTGAATATGGGAGAACTAGCTTGCTATGATC 598
Query 630 ACGCCAAACACTTTGTCATCGATAAGAAGATTGCTGAGGATAACATTTTTGCGCACACTC 689
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 599 ACGCCAAACACTTTGTCATCGATAAGAAGATTGCTGAGGATAACATTATTGCGCACACGC 658
Query 690 TTGCTTCTATAATGTCGGGTCTTGCTTCGACAAGTTTGAGTTGTCCAGCTGATGTGGTGA 749
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 659 TTGCTTCTATAATGTCGGGTCTTGCTTCTACAACTTTGAGTTGTCCAGCTGATGTGGTGA 718
Query 750 AGACGAGGATGATGAACCAGGGTGAAAATGCTGTGTACAGAAATTCTTACGACTGTTTGG 809
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 719 AGACGAGGATGATGAACCAGGGTGAAAATGCTGTGTACAGAAACTCCTACGACTGTTTGG 778
Query 810 TGAAGACGGTTAAGTTTGAAGGAATAAGAGCTTTGTGGAAAGGTTTCTTCCCGACATGGG 869
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGAAGACGGTTAGGTTTGAAGGAATAAGAGCTTTGTGGAAAGGTTTCTTCCCGACATGGG 838
Query 870 CAAGGCTTGGACCGTGGCAGTTCGTGTTTTGGGTCTCCTATGAGAAGTTTAGACTGCTGG 929
||||||||||||||||||||||||||||||||||||| || ||||||||||||| || |
Sbjct 839 CAAGGCTTGGACCGTGGCAGTTCGTGTTTTGGGTCTCTTACGAGAAGTTTAGACAACTCG 898
Query 930 CAGGAATCTCTTCCTTCTA 948
|||| ||||| ||||||||
Sbjct 899 CAGGGATCTCGTCCTTCTA 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5