BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14150.1
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471574 jgi|Araly1|471574|fgenesh2_kg.1__1528__AT1G14150.1 941 0.0
> Ahg471574 jgi|Araly1|471574|fgenesh2_kg.1__1528__AT1G14150.1
Length=681
Score = 941 bits (509), Expect = 0.0
Identities = 635/693 (92%), Gaps = 19/693 (3%)
Strand=Plus/Plus
Query 33 ATGAGCTCCTTCACCACCACCAACACTCCGCCACCGTATCTCCTCCG-GAAAATTTATCA 91
||||||||||||| | |||||||||||| ||||||||||||||||| ||| ||| ||
Sbjct 1 ATGAGCTCCTTCA--A-CACCAACACTCCACCACCGTATCTCCTCCGCCCAAA-TTACCA 56
Query 92 TCGCCGTGTAAAC-CAACCGTTCTCCGTCGTATGTTGCACCGGAGAACCCCAACAAGACA 150
|||||||||||| | ||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 57 CCGCCGTGTAAACTC-ACCTTTCTCCGTCGTATGCTGCACCGGAGAATCCCAACAAGACA 115
Query 151 TCTTCACCCGCCGGAGAACCTTGACTTCACTAATAACATTC-ACGGTCATCGGCGGTGCT 209
||||||| ||| |||||||| |||| ||||| |||||| || |||||||||||||||||
Sbjct 116 TCTTCACTCGCAGGAGAACCCTGACCTCACTTATAACA-TCGACGGTCATCGGCGGTGCC 174
Query 210 ACGTCATCAGCATTAGCACAGGAGAAATGGGGGACAAGGTCATTCATAAAGGAGAAATAT 269
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ACGTCATCAGCATTAGCTCAGGAGAAATGGGGGACAAGGTCATTCATAAAGGAGAAATAT 234
Query 270 TTTATGCCGGGACTATCACCTGAGGATGCGGCGGCGCGTATAAAACAGACGGCTGAAGGA 329
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 235 TTTATGCCGGGGCTATCGCCGGAGGATGCGGCGGCGCGTATAAAACAGACGGCAGAAGGA 294
Query 330 TTAAGAGACATGAGGGAGATGTTGGACCACATGTCGTGGAGGTACGTTATATTCTACATA 389
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 295 TTAAGAGACATGAGGGAGATGTTGGAGCACATGTCGTGGAGGTACGTTATATTCTACATA 354
Query 390 AGATTGAAACAGGCTTATCTGTCTCAGGATCTCACCAACGCCATGAACATCTTGCCGGAG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGATTGAAACAGGCTTATCTGTCTCAGGATCTCACCAACGCCATGAACATCTTGCCGGAG 414
Query 450 AGTCGCCGGAATGATTACGTTCAGGCGGCAAACGAGCTTGTCGAAAACATGAGTGAGTTG 509
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 AATCGCCGGAATGATTACGTTCAGGCGGCAAACGAGCTAGTCGAAAACATGAGTGAGTTG 474
Query 510 GATTTCTATGTACGGACGCCAAAGGTGTACGAGTCCTATCTTTACTACGAGAAGACATTG 569
|||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 GATTACTACGTACGGACGCCAAAGGTGTACGAGTCCTATCTCTACTACGAGAAGACATTG 534
Query 570 AAATCGATAGACAATGTTGTGGAGTTTCTTGCTTAATTCAGTTGTATTG-TATATATGTC 628
||||||||||||||||| |||||| ||||||||||||||| |||||| | ||||| ||
Sbjct 535 AAATCGATAGACAATGTGGTGGAGCTTCTTGCTTAATTCAAATGTATTAATGTATATATC 594
Query 629 TTTCTTCATTCTTCACATGAAATCTCTGGACTCGTTACATTAGA-TATAAAATTAAAAGA 687
||||||||||||||||||||||| ||||||||| |||||||| | || | | | ||||
Sbjct 595 TTTCTTCATTCTTCACATGAAATTTCTGGACTCATTACATTACACTAGATA-T-AAAA-- 650
Query 688 CTTAATAATGTA-T-ATTCAAGAAACATTTCGT 718
|||| || | | | ||||||||||||||||||
Sbjct 651 -TTAAAAAAG-ACTTATTCAAGAAACATTTCGT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26647918983
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5