BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14160.1 Length=919 Score E Sequences producing significant alignments: (Bits) Value Ahg920303 jgi|Araly1|920303|scaffold_101584.1 1037 0.0 > Ahg920303 jgi|Araly1|920303|scaffold_101584.1 Length=699 Score = 1037 bits (561), Expect = 0.0 Identities = 619/647 (96%), Gaps = 4/647 (1%) Strand=Plus/Plus Query 195 GAAGCAAAGCATAATGAAGCTGAGGAAGCACAAGGGATTGAAGCTA-GGGAAGCAAAACA 253 ||||||||||| | ||||||||||||||||||| | || |||| | ||||||||||||| Sbjct 53 GAAGCAAAGCAGATTGAAGCTGAGGAAGCACAACGAATAAAAGC-AGGGGAAGCAAAACA 111 Query 254 GATTGAAGCTGGGGAAACTTCAAGATCATCTAGGAAA-TTGATTACTTTTGAGCCAAAGT 312 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 112 GATTGAAGCTGGGGAAACTTCAAGATCATCTAGGAAAGTT-ATTACTTTTGAGCCAAAGT 170 Query 313 TGGTTATAAACAAAGGAATATCGGTTCTTGGATTCGTTCTGCGGTTATTTGCTGTTTTTG 372 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 171 TAGTTATAAACAAAGGAATATCGGTTCTTGGATTCGTTCTGCGGTTATTTGCTGTTTTTG 230 Query 373 GAACTATAGGAAGCGCGCTTGCCATGGGAACAACACATGAATCTGTTGTCTCTTTGAGTC 432 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 231 GAACTATAGGAAGTGCGCTTGCCATGGGAACAACACATGAATCTGTTGTCTCTTTAAGCC 290 Query 433 AGCTCGTACTTCTGAAAGTTAAATACAGCGACTTACCAACGCTCATGTTTTTCGTGGTTG 492 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 AGCTCGTACTTCTCAAAGTTAAATACAGCGACTTACCAACGCTCATGTTTTTCGTGGTTG 350 Query 493 CAAACGCCATTTCTGGTGGATATTTGGTTCTTTCTCTACCTGTGAGTATCTTTCATATCT 552 ||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 351 CAAACGCGATTGCTGGTGGATATTTGGTTCTCTCTCTACCGGTGAGTATCTTTCATATCT 410 Query 553 TCAGTACTCAAGCTAAAACCTCGAGAATCATCTTGCTCGTTGTCGACACGGTGATGCTGG 612 | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 411 TTAGTACTAAAGCTAAAACCTCGAGAATCATCTTGCTCGTTATCGACACGGTGATGCTGG 470 Query 613 CTTTGGTTAGCTCTGGAGCATCTGCAGCAACAGCCACCGTGTATTTAGCTCACGAGGGGA 672 ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 471 CTTTGGTGAGCTCTGGTGCATCTGCAGCAACAGCCACCGTGTATCTAGCTCACGAGGGGA 530 Query 673 ACACAACTGCTAATTGGCCACCGATCTGCCAGCAATTTGACGGATTCTGTGAACGCATCT 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 ACACAACTGCTAATTGGCCACCGATCTGCCAGCAATTTGACGGATTCTGTGAACGCATCT 590 Query 733 CGGGATCTCTCATCGGTTCTTTCTGCGCAGTGATCTTACTCATGCTTATTGTTATCAATT 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 CGGGATCTCTCATCGGTTCTTTCTGCGCAGTGATCTTACTCATGCTTATTGTTATCAATT 650 Query 793 CCGCTATCTCCCTCTCTCGCCACTAAGATATCTATGCACATATATAT 839 | |||||||||||||| || ||||||||||||||||||||||||||| Sbjct 651 CGGCTATCTCCCTCTCGCGGCACTAAGATATCTATGCACATATATAT 697 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34081887798 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5