BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14160.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920303 jgi|Araly1|920303|scaffold_101584.1 1037 0.0
> Ahg920303 jgi|Araly1|920303|scaffold_101584.1
Length=699
Score = 1037 bits (561), Expect = 0.0
Identities = 619/647 (96%), Gaps = 4/647 (1%)
Strand=Plus/Plus
Query 195 GAAGCAAAGCATAATGAAGCTGAGGAAGCACAAGGGATTGAAGCTA-GGGAAGCAAAACA 253
||||||||||| | ||||||||||||||||||| | || |||| | |||||||||||||
Sbjct 53 GAAGCAAAGCAGATTGAAGCTGAGGAAGCACAACGAATAAAAGC-AGGGGAAGCAAAACA 111
Query 254 GATTGAAGCTGGGGAAACTTCAAGATCATCTAGGAAA-TTGATTACTTTTGAGCCAAAGT 312
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 112 GATTGAAGCTGGGGAAACTTCAAGATCATCTAGGAAAGTT-ATTACTTTTGAGCCAAAGT 170
Query 313 TGGTTATAAACAAAGGAATATCGGTTCTTGGATTCGTTCTGCGGTTATTTGCTGTTTTTG 372
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TAGTTATAAACAAAGGAATATCGGTTCTTGGATTCGTTCTGCGGTTATTTGCTGTTTTTG 230
Query 373 GAACTATAGGAAGCGCGCTTGCCATGGGAACAACACATGAATCTGTTGTCTCTTTGAGTC 432
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 231 GAACTATAGGAAGTGCGCTTGCCATGGGAACAACACATGAATCTGTTGTCTCTTTAAGCC 290
Query 433 AGCTCGTACTTCTGAAAGTTAAATACAGCGACTTACCAACGCTCATGTTTTTCGTGGTTG 492
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AGCTCGTACTTCTCAAAGTTAAATACAGCGACTTACCAACGCTCATGTTTTTCGTGGTTG 350
Query 493 CAAACGCCATTTCTGGTGGATATTTGGTTCTTTCTCTACCTGTGAGTATCTTTCATATCT 552
||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 351 CAAACGCGATTGCTGGTGGATATTTGGTTCTCTCTCTACCGGTGAGTATCTTTCATATCT 410
Query 553 TCAGTACTCAAGCTAAAACCTCGAGAATCATCTTGCTCGTTGTCGACACGGTGATGCTGG 612
| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 411 TTAGTACTAAAGCTAAAACCTCGAGAATCATCTTGCTCGTTATCGACACGGTGATGCTGG 470
Query 613 CTTTGGTTAGCTCTGGAGCATCTGCAGCAACAGCCACCGTGTATTTAGCTCACGAGGGGA 672
||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 471 CTTTGGTGAGCTCTGGTGCATCTGCAGCAACAGCCACCGTGTATCTAGCTCACGAGGGGA 530
Query 673 ACACAACTGCTAATTGGCCACCGATCTGCCAGCAATTTGACGGATTCTGTGAACGCATCT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ACACAACTGCTAATTGGCCACCGATCTGCCAGCAATTTGACGGATTCTGTGAACGCATCT 590
Query 733 CGGGATCTCTCATCGGTTCTTTCTGCGCAGTGATCTTACTCATGCTTATTGTTATCAATT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CGGGATCTCTCATCGGTTCTTTCTGCGCAGTGATCTTACTCATGCTTATTGTTATCAATT 650
Query 793 CCGCTATCTCCCTCTCTCGCCACTAAGATATCTATGCACATATATAT 839
| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 651 CGGCTATCTCCCTCTCGCGGCACTAAGATATCTATGCACATATATAT 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5