BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14170.3
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471578 jgi|Araly1|471578|fgenesh2_kg.1__1532__AT1G14170.3 2636 0.0
> Ahg471578 jgi|Araly1|471578|fgenesh2_kg.1__1532__AT1G14170.3
Length=1706
Score = 2636 bits (1427), Expect = 0.0
Identities = 1625/1719 (95%), Gaps = 19/1719 (1%)
Strand=Plus/Plus
Query 1 TATTTAATATATAGACGTTAGCCCCAAAAACTTTGTATTTCTCTGCTTTCAAACCCAAGA 60
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1 TATTTAATATATAGACGTTAGCCCC-AAAAC-TTGTATTTCTCTGCTTTCAAACCCAAAA 58
Query 61 AGCC--AAAATAAAACCATTGAAGCTAGCAGCAGCCGAAGAAGCGGTCACATTTTCCGGC 118
|||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 59 AGCCAAAAAAAAAAACCATTG-A---AGCAGCAGCCGAAGAAGCGGTCACATTTTCCGGC 114
Query 119 AAAACAGACAGATCGACCAGTGAAAGCTCCTATCTCTTCCTG-AGGCATTGTGA---TCT 174
|||| |||||||||||||||||||||||| ||| ||||||| | ||||||||| | |
Sbjct 115 TAAACGGACAGATCGACCAGTGAAAGCTCCCATCACTTCCTGCA-GCATTGTGATTGTTT 173
Query 175 CTTGTTAAAATGGCTAGTACTCTGAGGAACATTCATGGTAAGAGATCTAATTTGCAATCT 234
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 174 CTTGTTAAAATGGCTAGTACTCTGAGGAACGTTCATGGTAAGAGATCTAATTTCCAATCT 233
Query 235 GAGTTTACTGGAAATGGAGGAAGTAAGAGAAGAAATCTTCATGATGAAACAGATCAAAAT 294
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 234 GAGTTTACTGGAAATGGAGGAAGTAAGAGAAGAAATCTTCATGATGATACAGATCAAAAT 293
Query 295 GTTATTGCTTCAGAAGACACTGTATACCGCTACTTGTGTCCCGTGAAAAAGACCGGGAGC 354
||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 294 GTTATTGGGTCAGAAGAAACTGTGTACCGCTACTTGTGCCCCGTGAAAAAGACCGGGAGC 353
Query 355 ATTATCGGGAAAGGCGGCGAGATTGCTAAGCAGATAAGGTCTGAGACTAAATCAAACATG 414
||||||||||| || |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 354 ATTATCGGGAAGGGTGGCGAGATCGCTAAGCAGATAAGGTCTGATACAAAATCAAACATG 413
Query 415 AGGATAAACGAGGCTTTACCTGGTTGTGAGGAGCGTGTTGTTACCATGTATTCCACTAAT 474
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 414 AGGATAAACGAGGCTTTACCCGGTTGTGAAGAGCGTGTTGTTACCATATATTCCACTAAT 473
Query 475 GAGGAGTTGAATCATTTTGGAGATGATGGTGAGCTTGTTTGTCCTGCTTTGGATGCTCTT 534
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 474 GAGGAGTTGAATCATTTTGGAGATGATGGTGAGCTTGTTTGTCCTGCTTTAGATGCTCTT 533
Query 535 TTCAAGGTTCATGACATGGTTGTAGCGGACGCTGATCAAGATGATGGTACTGATGATGAT 594
|||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||
Sbjct 534 TTCAAGGTTCATGACATGGTTGTAGCGGACACTGATCATGATGATGGTA---ATGATGAT 590
Query 595 AATGATCTTGGTGAAAAGCAAACGGTAACCGTGAGGATGCTTGTACCGTCTGACCAAATT 654
|||||||||||||||| |||||||| || || |||||||| ||||||||||||||||||
Sbjct 591 GATGATCTTGGTGAAAAACAAACGGTTACTGTTAGGATGCTCGTACCGTCTGACCAAATT 650
Query 655 GGTTGCGTTATTGGGAAAGGAGGTCAAGTAATCCAGAATCTTCGTAACGACACCAATGCT 714
||||||||||| ||||||||||| ||||| ||||||||||| ||||| || |||||||||
Sbjct 651 GGTTGCGTTATCGGGAAAGGAGGGCAAGTCATCCAGAATCTGCGTAATGAAACCAATGCT 710
Query 715 CAGATTCGTGTTATCAAAGATCATCTTCCTGCTTGTGCTTTGACTTTGAGTCATGATGAG 774
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 711 CAGATTCGTGTCATCAAAGATCATCTACCTTCTTGTGCTTTGACTTTGAGTCATGATGAG 770
Query 775 CTTCTTCTGATAATTGGAGAGCCTTTGGTTGTTAGAGAAGCTCTTTATCAAGTTGCTTCA 834
||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 771 CTTCTTCAGATAATTGGAGAACCTTTGGTTGTTAGAGAAGCTCTTTATCAAGTAGCTTCC 830
Query 835 CTGCTTCATGATAATCCTTCAAGATTTCAACACTTACTCCTGTCTTCTTCAAGTTCTTCC 894
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 831 CTGCTTCATGATAATCCGTCACGATTTCAACACTTACTCCTGTCTTCTTCAAGTTC-T-- 887
Query 895 ATGCATCAACCTGGTGCAATGTTAATGTCTGCAGCACTGACGAGCTCTCACAGAAACTAC 954
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 888 ATGCATCAACCTGGTGCAATGTTAATGTCTGCAGCGCTAACGAGCTCTCACAGAAACTAC 947
Query 955 GCTGTGCGTAGAGATATAGCAGATGCAAGAGAATTTTGTGTTTGCTTCATCTGTCCAGCT 1014
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 948 GCTGTGCGTAGAGATATAGCAGATGCAAGGGAGTTTTGTGTTTGCTTCATCTGTCCAGCT 1007
Query 1015 GAAAACGTTGGAGGTGTGATTGGAAAAGGCGGTGGTTTCATTAATCAGATCAGGCAAGAA 1074
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1008 GAAAACGTTGGAGGTGTAATTGGAAAAGGTGGTGGTTTCATTAATCAGATCAGGCAAGAA 1067
Query 1075 ACTGGTGCTACTATTAGAGTCAATACCTCAGAAACTGATGATGATGATTGCATCATTTTC 1134
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1068 ACTGGTGCTACGATTAGAGTCAATACCTCAGAAACTGATGAAGATGATTGCATAATTTTC 1127
Query 1135 ATATCATCAAAAGAGTTCTACGAAGATCAATCTCCAGCGGTGAATGCAGCAATACGCTTA 1194
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1128 ATATCATCAAAAGAGTTCTATGAAGATCAATCTCCAGCGGTGAATGCAGCAATACGCTTA 1187
Query 1195 CAACAGCGATGCAGTGAGAAAGTTGGTAAAGATGCAAATGATTTAGCAATCTCTACGCGT 1254
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1188 CAACAGCGATGCAGTGAGAAAGTGGGTAAAGATGCAAATGATTTAGCATTCTCTACGCGT 1247
Query 1255 TTACTTGTATCGAGTTCCCAAATCGGGTGTCTCATTGGAAAAGGTGGAGCAGTTATATCT 1314
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1248 TTACTTGTATCGAGTTCCCAAATCGGGTGTCTCATTGGAAAAGGTGGAGCGGTTATATCC 1307
Query 1315 GAGATGAGGAGTGTAACAAGAGCTAATATTCGTATTCTTCAAAAAGAAGATGTACCAAAA 1374
|||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1308 GAGATGCGGAGTGTAACAAGAGCAAATATCCGTATTCTTCAAAAAGAAGATGTACCAAAA 1367
Query 1375 ATTGCTCGTGAAGATGAAGAGATGGTTCAGATTACAGGAAGTCCTGATGCCGCTATGAAA 1434
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1368 ATTGCACGTGAAGATGAAGAGATGGTTCAGATTACAGGAAATCCTGATGCCGCTATGAAA 1427
Query 1435 GCTCTCACGCAAGTAATCTTGCGATTAAGAGCTAACTCTTTCGACATGGATCATGGACTT 1494
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GCTCTTACGCAAGTAATCTTGCGATTAAGAGCTAACTCTTTCGACATGGATCATGGACTT 1487
Query 1495 GTCTTGCTACCAACATCTTTTCCATATATCCCTCAAGTGACTGAAAGTTCGAGCAAATCC 1554
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1488 GTCTTGCTACCAACATCTTTTCCATATATCCCTCAACTGACCGAAAGTTCGAGCAAATCC 1547
Query 1555 AAATACGCAAAACGCGATGACCACAGTAAACTGAATTCGAATTCTAAGAGAAGAAACCAT 1614
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 1548 AAATACGCAAAACGCGATGATCACAGCAAACTGAATTCGAATTCTAAGAGAAGAAACTAT 1607
Query 1615 GTTTCTTAAATCAAGAAAACCAATCTTAGAGAGGAAGATTGAGAGTGTTCAGAACTTCAA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 GTTTCTTAAATCAAGAAAACCAATCTTAGAGAGGAAGATTGAGAGTGTTCAGAACTTCAA 1667
Query 1675 TGTTGATGCAATTTTTATACAATATTATGTTACTTGTAG 1713
|||||||||||||||||||||| || ||||||||| |||
Sbjct 1668 TGTTGATGCAATTTTTATACAAAATGATGTTACTTATAG 1706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69552787370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5