BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14180.1
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312416 jgi|Araly1|312416|fgenesh1_pm.C_scaffold_1001196 1066 0.0
> Ahg312416 jgi|Araly1|312416|fgenesh1_pm.C_scaffold_1001196
Length=1017
Score = 1066 bits (577), Expect = 0.0
Identities = 693/744 (93%), Gaps = 27/744 (4%)
Strand=Plus/Plus
Query 328 ATGGGTTCGCTCTGTTGTGTAGCTGCGAAGTCAGATAGATCAAATTCTACAAGTGGGGAC 387
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGGTTCGCTCTGTTGTGTCGCTGCAAAGTCAGATAGATCAAATTCTGCAAGTGGGGAC 60
Query 388 TTTTCATTTGGCCTGCATGAGCCTTATTGGAGGACTAATACAAGTTTCTCTCCTCCTTCA 447
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTTTCTTTTGGCCCGCATGAGCCTTATTGGAGGACTAATACAAGTTTCTCTCCACCTTCA 120
Query 448 TCGAGATGGGACGTCCATGGATTAATGGATGGTATTAGCTGTTATGGATCTTCCACATCA 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGAGATGGGACGTCCATGGATTAATGGATGGTATTAGCTGTTATGGATCTTCCACATCA 180
Query 508 TCAAATGCTAATGTTCTTCGTAGTCCCGACCTTTCTCAAGCTCTTCATTGGACACCTAAC 567
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTAATGCTAATGTTCTTCGTAGTCCCGACCTTTCTCAAGCTCTTCATTGGACACCTAAT 240
Query 568 GATTTTGAATCTGCTACAAGAAGAGATCAGATTGTTAAGCAACTACCAGGTACATCAAGA 627
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATTTTGAATCTGCAACAAGAAGAGATCAGATTGTTAAGCAACTACCAGGTACATCAAGA 300
Query 628 AATGTC----------G----G-TATTGGTGACTCTGAACCTGGTCGTAAC-TCCTCAAG 671
|||||| | | ||||||||||||||||||||| |||||| | ||||||
Sbjct 301 AATGTCGGTATTGGGTGTTCTGATATTGGTGACTCTGAACCTGGCCGTAACGT-CTCAAG 359
Query 672 CCGGCGCTTTTTCTTGTCTAAGCCGGTTCATCCTATACTGCATCCTTCTGATAATGTTAG 731
||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 CCGGCGCTTTTTCCTGTCCAAGCCGGTTCATCCTATACTACATCCTTCTGATAATGTTAG 419
Query 732 GGATACAGCATCTGATTCTGCGGATGCCTGCAGTTGGAGCAGCGGGACCCCAAGCAGCAT 791
||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct 420 GGATACAACATCTGATTCTACGGATGCCTGCAGTTGGAGCAGTGGGACCGCAAGCAGCAT 479
Query 792 TGATTCTGTGGATGTTCCTGAGCCAGTTCTTGATTGGAATAATAA---CTC-T--ACCAA 845
||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 480 TGATTCTGTGGATGTTCCTGAGCCAGTTCTTGATTGGAATAATAATAACTCCTCTACCAA 539
Query 846 AGCACAACAAGTAGCAGCTTCAAGTACATTTAAATGCGGACTGTGTAACAGATACCTCTC 905
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 AGCACAACAAGTAGC---TTCAAGTACATTTAAATGCGGATTGTGTAACAGATACCTCTC 596
Query 906 GCAGAAATCTCCGTGGGGATCTCGGTCCATTGTAAGAAACCGAGACATGCCTGTCACAGG 965
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 597 GCAGAAATCTCCTTGGGGATCTCGGTCCATCCTAAGAAACCGAGACATGCCTGTCACAGG 656
Query 966 AGTGCTTTCATGTCAACATGTCTTTCACGTGGAATGTCTTGACCAATCAACTCCAAAGAT 1025
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 657 AGTGCTTTCATGTCAACACGTCTTTCACGCGGAATGTCTTGACCAATCAACTCCAAAGAC 716
Query 1026 TCAACGCAATGACCCACTGTGTCC 1049
|||||||||||||||||||| |||
Sbjct 717 TCAACGCAATGACCCACTGT-TCC 739
Score = 399 bits (216), Expect = 2e-110
Identities = 263/285 (92%), Gaps = 6/285 (2%)
Strand=Plus/Plus
Query 1095 TGTCCCGAGGCTTAAACCGCTTTATGAAGATGGGCCATCTTCAAGACCATGGGGCTGTGC 1154
||| ||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 734 TGTTCCGAGGCTTAAACCGCTTTGTGAAGATGGGCCATCTACAAGACCATGGGGTTGTGC 793
Query 1155 TCAGGC---C-GGTGACTGTGTTGAAAGTGCTGTCAATGTGCCCCCTAAAAACACCATGA 1210
|||||| | |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 794 TCAGGCTGGCTGGTGACTGTGTTGAAAGTGCTGTCAATGTGCCGCAGAAAAACACCATGA 853
Query 1211 TGATGATAAACCGGAACCGGATAAGGAA-AAGCCTCTCATTGAGAGGAAACTCAAGCAAA 1269
||||||||||||||| || ||||||||| || ||||||||||||||||||||||||||||
Sbjct 854 TGATGATAAACCGGAGCCAGATAAGGAAGAA-CCTCTCATTGAGAGGAAACTCAAGCAAA 912
Query 1270 GATTTTTCAAGAAAAATGAAGAGAAGTAACTCAGTTGCCATGGAAAATCTGGCTAATCAA 1329
|||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 913 GATTTTCCAAGAAAAATGAAGAGAAGTAACTCAGTTGCCATGGATAATCTCACTAATCAA 972
Query 1330 GTCTCGCTTGTTCATTCTAGAGGGAAAGAGAAAGTTTCATGGTAG 1374
||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 973 GTCTCGCTTGTGCGTTCTAGAGGGAAAGAGAAAGCTTCATGGTAG 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60373038325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5