BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14180.1 Length=1611 Score E Sequences producing significant alignments: (Bits) Value Ahg312416 jgi|Araly1|312416|fgenesh1_pm.C_scaffold_1001196 1066 0.0 > Ahg312416 jgi|Araly1|312416|fgenesh1_pm.C_scaffold_1001196 Length=1017 Score = 1066 bits (577), Expect = 0.0 Identities = 693/744 (93%), Gaps = 27/744 (4%) Strand=Plus/Plus Query 328 ATGGGTTCGCTCTGTTGTGTAGCTGCGAAGTCAGATAGATCAAATTCTACAAGTGGGGAC 387 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| Sbjct 1 ATGGGTTCGCTCTGTTGTGTCGCTGCAAAGTCAGATAGATCAAATTCTGCAAGTGGGGAC 60 Query 388 TTTTCATTTGGCCTGCATGAGCCTTATTGGAGGACTAATACAAGTTTCTCTCCTCCTTCA 447 ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 TTTTCTTTTGGCCCGCATGAGCCTTATTGGAGGACTAATACAAGTTTCTCTCCACCTTCA 120 Query 448 TCGAGATGGGACGTCCATGGATTAATGGATGGTATTAGCTGTTATGGATCTTCCACATCA 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCGAGATGGGACGTCCATGGATTAATGGATGGTATTAGCTGTTATGGATCTTCCACATCA 180 Query 508 TCAAATGCTAATGTTCTTCGTAGTCCCGACCTTTCTCAAGCTCTTCATTGGACACCTAAC 567 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTAATGCTAATGTTCTTCGTAGTCCCGACCTTTCTCAAGCTCTTCATTGGACACCTAAT 240 Query 568 GATTTTGAATCTGCTACAAGAAGAGATCAGATTGTTAAGCAACTACCAGGTACATCAAGA 627 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GATTTTGAATCTGCAACAAGAAGAGATCAGATTGTTAAGCAACTACCAGGTACATCAAGA 300 Query 628 AATGTC----------G----G-TATTGGTGACTCTGAACCTGGTCGTAAC-TCCTCAAG 671 |||||| | | ||||||||||||||||||||| |||||| | |||||| Sbjct 301 AATGTCGGTATTGGGTGTTCTGATATTGGTGACTCTGAACCTGGCCGTAACGT-CTCAAG 359 Query 672 CCGGCGCTTTTTCTTGTCTAAGCCGGTTCATCCTATACTGCATCCTTCTGATAATGTTAG 731 ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 360 CCGGCGCTTTTTCCTGTCCAAGCCGGTTCATCCTATACTACATCCTTCTGATAATGTTAG 419 Query 732 GGATACAGCATCTGATTCTGCGGATGCCTGCAGTTGGAGCAGCGGGACCCCAAGCAGCAT 791 ||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct 420 GGATACAACATCTGATTCTACGGATGCCTGCAGTTGGAGCAGTGGGACCGCAAGCAGCAT 479 Query 792 TGATTCTGTGGATGTTCCTGAGCCAGTTCTTGATTGGAATAATAA---CTC-T--ACCAA 845 ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 480 TGATTCTGTGGATGTTCCTGAGCCAGTTCTTGATTGGAATAATAATAACTCCTCTACCAA 539 Query 846 AGCACAACAAGTAGCAGCTTCAAGTACATTTAAATGCGGACTGTGTAACAGATACCTCTC 905 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 540 AGCACAACAAGTAGC---TTCAAGTACATTTAAATGCGGATTGTGTAACAGATACCTCTC 596 Query 906 GCAGAAATCTCCGTGGGGATCTCGGTCCATTGTAAGAAACCGAGACATGCCTGTCACAGG 965 |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 597 GCAGAAATCTCCTTGGGGATCTCGGTCCATCCTAAGAAACCGAGACATGCCTGTCACAGG 656 Query 966 AGTGCTTTCATGTCAACATGTCTTTCACGTGGAATGTCTTGACCAATCAACTCCAAAGAT 1025 |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 657 AGTGCTTTCATGTCAACACGTCTTTCACGCGGAATGTCTTGACCAATCAACTCCAAAGAC 716 Query 1026 TCAACGCAATGACCCACTGTGTCC 1049 |||||||||||||||||||| ||| Sbjct 717 TCAACGCAATGACCCACTGT-TCC 739 Score = 399 bits (216), Expect = 2e-110 Identities = 263/285 (92%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 1095 TGTCCCGAGGCTTAAACCGCTTTATGAAGATGGGCCATCTTCAAGACCATGGGGCTGTGC 1154 ||| ||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| Sbjct 734 TGTTCCGAGGCTTAAACCGCTTTGTGAAGATGGGCCATCTACAAGACCATGGGGTTGTGC 793 Query 1155 TCAGGC---C-GGTGACTGTGTTGAAAGTGCTGTCAATGTGCCCCCTAAAAACACCATGA 1210 |||||| | |||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 794 TCAGGCTGGCTGGTGACTGTGTTGAAAGTGCTGTCAATGTGCCGCAGAAAAACACCATGA 853 Query 1211 TGATGATAAACCGGAACCGGATAAGGAA-AAGCCTCTCATTGAGAGGAAACTCAAGCAAA 1269 ||||||||||||||| || ||||||||| || |||||||||||||||||||||||||||| Sbjct 854 TGATGATAAACCGGAGCCAGATAAGGAAGAA-CCTCTCATTGAGAGGAAACTCAAGCAAA 912 Query 1270 GATTTTTCAAGAAAAATGAAGAGAAGTAACTCAGTTGCCATGGAAAATCTGGCTAATCAA 1329 |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 913 GATTTTCCAAGAAAAATGAAGAGAAGTAACTCAGTTGCCATGGATAATCTCACTAATCAA 972 Query 1330 GTCTCGCTTGTTCATTCTAGAGGGAAAGAGAAAGTTTCATGGTAG 1374 ||||||||||| | |||||||||||||||||||| |||||||||| Sbjct 973 GTCTCGCTTGTGCGTTCTAGAGGGAAAGAGAAAGCTTCATGGTAG 1017 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60373038325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5