BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14182.1

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920306 jgi|Araly1|920306|scaffold_101587.1                        335    1e-91
  Ahg318576 jgi|Araly1|318576|fgenesh1_pm.C_scaffold_3001592          63.9    6e-10


> Ahg920306 jgi|Araly1|920306|scaffold_101587.1
Length=333

 Score =  335 bits (181),  Expect = 1e-91
 Identities = 256/292 (88%), Gaps = 6/292 (2%)
 Strand=Plus/Plus

Query  1    ATGAAATGGGCTACTTTGTTTATGGTTTCTTGTGTTCTCATGTTCTTCGTTATGAACAAT  60
            |||||||  ||||||||||||||||||| |||| |||| ||||||||| |||||||||||
Sbjct  23   ATGAAATCAGCTACTTTGTTTATGGTTTGTTGTCTTCTTATGTTCTTCCTTATGAACAAT  82

Query  61   ATCAATGAGGTGGAAAGTATCCATGTGGAGCAAGCAGGAGTATGTGAATTCACAGGAGAA  120
            || || |||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct  83   ATTAAAGAGGTGGAAACTGTCCATGTGGAGCAAGCAGGAGTGTGTGAATTCACAGGAGAA  142

Query  121  TTCCCTGGCAAATGTGGCAATAACGGAAG-AAAATGTGCGTAGAAGCGATGAATAA-AA-  177
            ||||| || |||||||||||| ||||||| |||| |||| ||||||| ||||| || || 
Sbjct  143  TTCCCCGGAAAATGTGGCAATGACGGAAGAAAAACGTGCATAGAAGCAATGAACAAGAAC  202

Query  178  -AAGGCAGTCCAGGAGAAAA-CAAGAAAAACTTACGTTGTGAATGTTTTGATAACCCTGT  235
               |||| ||||   |||||  || |||||||||||||||||||||||||||||||||||
Sbjct  203  GGCGGCACTCCA-TTGAAAAGAAATAAAAACTTACGTTGTGAATGTTTTGATAACCCTGT  261

Query  236  TGTCATCTTGGGTCGTCCCAAACGCATATGCAGATGTCGAAACAATTGCTAA  287
            ||||||||| |||||||| |||||||| |||||||||||| | |||||||||
Sbjct  262  TGTCATCTTAGGTCGTCCGAAACGCATTTGCAGATGTCGAGATAATTGCTAA  313


> Ahg318576 jgi|Araly1|318576|fgenesh1_pm.C_scaffold_3001592
Length=276

 Score = 63.9 bits (34),  Expect = 6e-10
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  11  CTACTTTGTTTATGGTTTCTTGTGTTCTCATGTT  44
           ||||||||||||||||||||||||||||||||||
Sbjct  11  CTACTTTGTTTATGGTTTCTTGTGTTCTCATGTT  44



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10034919907


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5