BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14190.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334713 jgi|Araly1|334713|fgenesh1_pg.C_scaffold_1001278 2207 0.0
> Ahg334713 jgi|Araly1|334713|fgenesh1_pg.C_scaffold_1001278
Length=1566
Score = 2207 bits (1195), Expect = 0.0
Identities = 1407/1510 (93%), Gaps = 11/1510 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTACATGACCACAGATGCTAAAGAAGTTTCCGGCAAGTCATTCGATTACATCGTT 60
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 64 ATGCCTTACATGACCACAGATCCGAAAGAAGTTTCCGGCAAGTCATTCGATTACATCGTT 123
Query 61 GTAGGTGGCGGAACTGCGGGATGCTCCTTAGCCGCAACTCTATCTGAGAAATACTCTGTT 120
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 124 GTTGGAGGCGGAACTGCGGGATGCTCCTTAGCCGCAACTCTGTCTGAGAAATACTCTGTT 183
Query 121 CTTGTCATTGAACGTGGTGGCTCACCTTTTGGTGATCCTTTAGTAGAGGAAAGAAAGTAC 180
|| ||||||||||| |||||||| |||||||| ||||| |||||||| ||||||| ||||
Sbjct 184 CTGGTCATTGAACGCGGTGGCTCCCCTTTTGGAGATCCATTAGTAGAAGAAAGAAGGTAC 243
Query 181 TTTGGATACTCATTGCTAAATACAGATGAATACTCATCTGTTGCGCAAAGTTTTACCTCT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 TTTGGATACTCATTGCTAAATACAGATGAATACTCATCTGTTGCTCAAAGTTTTACCTCT 303
Query 241 GTAGATGGAATCGAAAACTACAGAGGACGCGTTCTTGGAGGATCGAGCGCTATAAATGGC 300
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 304 GTAGATGGAATCGAAAACTACAGAGGACGTGTGCTTGGAGGATCGAGTGCTATAAATGGC 363
Query 301 GGATTTTACAGCCGAGCAAGCGATGAGTTTGTGAAGAAAGCTGGATGGGACAAGGGTCTG 360
||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 364 GGATTTTACAGCCGAGCTAGCGATGAGTTTGTGAAGAAAACTGGTTGGGACAAGGATCTG 423
Query 361 GTTCAAGAATCTTATAAATGGGTTGAGTCTAAGGTTGTTTTCATGCCAGAACTGACTCAA 420
|||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 424 GTTCAAGATTCTTATAAATGGGTTGAGTCTAAGGTTGTCTTCATGCCAGAATTGACTCAA 483
Query 421 TGGCAATCTGTTGTGCAATTCGGGTTTCTTGAAGCCGGGTTTTATCCATATAACGGATAT 480
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 484 TGGCAATCTGTTGTTCAATTCGGGTTTCTTGAAGCCGGGTTTTATCCGTATAACGGATAT 543
Query 481 AGTTTGGAGCACACGCAAGGGACAAAAATCGGTGGAAGCATATACGATCAGTGTGGGAAA 540
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 544 AGTTTGGAGCACACGCAAGGGACAAAGATCGGTGGAAGCATATATGATCAGTGTGGGAAA 603
Query 541 AGACATACATCTGCAGATCTTTTGGGATTTGGTAAACCAAATTGTATAACTGTTCTTTTA 600
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||
Sbjct 604 AGACATACATCTGCAGATCTTTTGGGATTTGGTAAACCAAATTACATCACTGTTCTTCTA 663
Query 601 AACACAACGGTA-AAGAGCATAATCTTTGATAGTAGTAATAAGACTCGTGCGGTTGGAGT 659
||| ||||||| || ||||||||||||||| | ||| || ||||| || ||||||||
Sbjct 664 AACGCAACGGTCCAA-AGCATAATCTTTGAT-GC--TAACAAAACTCGCGCAGTTGGAGT 719
Query 660 TAGGTTTATGGAGAGTGATGGGAACTCAAGTAAGAGCTACAAAGTTCATGTTGAGCAGCA 719
||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 720 TAGGTTTTTGGAGAGTGATGGGAACTCAAATAAGAGCTACAAAGCTCATGTTGAGAAGCA 779
Query 720 TAGAGGCGAGGTTATACTCGCGGCTGGGGCTTTAGGTAGTCCGCAGATTCTTCTCTTAAG 779
||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 780 TAGAGGCGAGGTTATACTCACGGCTGGGGCTTTAGGTAGTCCGCAGATCCTCCTCTTAAG 839
Query 780 CGGTATTGGACCCGAGAATCATCTAAAGGATTTCGACATTCCTGTGATTGTCAATCTCAA 839
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 CGGAATTGGACCCGAGAATCATCTAAAAGATTTCGACATTCCTGTGATTGTCAATCTCAA 899
Query 840 AGAAGTCGGAAGAAAAATGTCGGATAATCCAGCGATCTCTCTTCTTGTTGATAGATTCTC 899
||||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||
Sbjct 900 AGAAGTCGGAAGAAAAATGTCAGATAATCCAGCAATTTCTCTTCTTGTTGATAGAATCTC 959
Query 900 GCAAAACCGCACACTCGAGCCACCTCAAGTTGCAGCAATAGCAGAAGGTTACAAATTCAT 959
|||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 960 GCAAAACCGCACACTCGAGCCACCTCAAGTTGCAGCGATTGCAGAAGGTTTCAAATTCAT 1019
Query 960 ACTCGAATCCGAGGTTCTCCCAACTGACATTACCACAACAAGAATCTCTATAGCAGCCAA 1019
| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1020 AGTCGAATCTGAGGTTCTTCCAACTGACATCACCACAACAAGAATCTCTATAGCAGCTAA 1079
Query 1020 AATCGCATTCCCTAAATCCAAAGGAAGGCTCAAGCTTAACAGCACTAACCCTAGGGAGAA 1079
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 GATTGCATTCCCTAAATCCAAAGGAAGGCTCAAGCTTAACAGCACTAACCCTATGGAGAA 1139
Query 1080 TCCGTCAGTGAAATTCAACTACTTGGAA-AACAAGGCAGACCTCGACGCATGCCTAGAGA 1138
|||| |||||||||||||||||||| || ||||||| |||||| |||||||||| |||||
Sbjct 1140 TCCGGCAGTGAAATTCAACTACTTG-AAGAACAAGGAAGACCTTGACGCATGCCAAGAGA 1198
Query 1139 TGGTTCTGCATCTTCAACATGTAGCGAGGTCTGAGACTGTCACGTTCTTCTTGGGGACAC 1198
||||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| ||||
Sbjct 1199 TGGTTCTGCATCTTCAACACGTAGCGAGGTCAGAGTGTGTGACGTTTTTCTTGGGTACAC 1258
Query 1199 AAGCTCATGATAAGCTTGTGGCGGGTGACGAAGAGCTTAA-AAGCTTCTGCATAA-AGAA 1256
||||||| |||||||||||||| ||||||||||| ||||| || |||||| | || ||||
Sbjct 1259 AAGCTCAGGATAAGCTTGTGGCAGGTGACGAAGACCTTAAGAA-CTTCTGTA-AACAGAA 1316
Query 1257 TGTTAGAACTTATTATCATTACCATGGTGGTTGCGTTGTTGGATCTGTTGTGGACGAGGA 1316
|||||||||||||||||||||||| || |||||| |||| |||||||| |||||||||||
Sbjct 1317 TGTTAGAACTTATTATCATTACCACGGCGGTTGCATTGTGGGATCTGTCGTGGACGAGGA 1376
Query 1317 GTATAAAGTGAATGGTGTTAAGCGTTTAAGAGTTGTTGATGGTTCAACGTTTGAAGAATC 1376
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1377 CTATAAAGTGAATGGTGTGAAGCGTTTAAGAGTCATTGATGGTTCAACGTTTGAAGAATC 1436
Query 1377 ACCAGGAACAAACCCTATGGCTACTGTTTTAATGCTGGGAAGATATCAAGGAATCAAAAT 1436
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1437 ACCAGGAACAAACCCTATGGCTACTGTTTTAATGTTGGGAAGATATCAAGGAATCAAAAT 1496
Query 1437 ACTCAAAGAACGAGAAGAGCAAGAAGATACATTTCTTAGCCCTCAAGGTAGCCCACAACC 1496
|||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||
Sbjct 1497 ACTCAAAGAACGAGAAGAACAAGAAAATATGTTTCTTAGCCCTCAAGGAAGCCCACAACC 1556
Query 1497 ACAGCCATAA 1506
||||||||||
Sbjct 1557 ACAGCCATAA 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5