BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14200.1

Length=817
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920308 jgi|Araly1|920308|scaffold_101589.1                        704    0.0  


> Ahg920308 jgi|Araly1|920308|scaffold_101589.1
Length=587

 Score =  704 bits (381),  Expect = 0.0
 Identities = 528/596 (89%), Gaps = 21/596 (4%)
 Strand=Plus/Plus

Query  116  TGGGTACTAGCGTGATGTCTTCTGAGAATGATTTCGTTGAGTTTTCTTCTATGTTCGAGA  175
            |||||| | ||||||||||||| ||||||||||||| ||||||||||||| | |||||||
Sbjct  7    TGGGTATTTGCGTGATGTCTTCGGAGAATGATTTCGCTGAGTTTTCTTCTTTCTTCGAGA  66

Query  176  GAATTATACAAGGAAGAGGTGATGGTCTCTCTCGATTTTTGCCGGTGATTGTAGCTTTAG  235
            | || || |||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  67   GGATGATCCAAGGAGGAGGCGATGGTCTCTCCCGATTTTTGCCGGTGATTGTAGCTTTAG  126

Query  236  CCGCCAGAGAAGACGATGATGACCAAGGATCTACCGATCAAACAA-CGAGACGGGGAGAT  294
            |||| ||||||||||||||||||||| ||   | ||| |   ||| | ||||     || 
Sbjct  127  CCGCTAGAGAAGACGATGATGACCAA-GA---ATCGA-C---CAATC-AGAC-----GA-  171

Query  295  CCGTTGAGTCCAAGGTTCGTGATGATCGGATCGCGATCGGGACTCGACGATTTCTTTAGC  354
             |   || ||||||| | ||||||||| ||||| | || |||||||||||||||||||||
Sbjct  172  -C---GAATCCAAGGCTGGTGATGATCAGATCGGGTTCTGGACTCGACGATTTCTTTAGC  227

Query  355  GACGGTGGAAAACAAGGGAGGTCGCCGGCGTTGAAGTCAGAAGTGGAGAATATGCCACGT  414
            |  || | |||||||||||| |||||||||| ||| ||||  || |||||||||||||||
Sbjct  228  GGGGGAGAAAAACAAGGGAGATCGCCGGCGTCGAAATCAGCGGTTGAGAATATGCCACGT  287

Query  415  GTCGTGATCGGAGAAGATAAGGAGAAATATGGTGGTTCTTGCGCGATTTGTTTGGATGAG  474
            |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||
Sbjct  288  GTCGTGATCGGAGAAGATAAGGAGAAAGGTGGTGGTTCTTGCGCGATTTGCTTGGAGGAG  347

Query  475  TGGTCTAAAGGTGACGTGGCGGCGGAGATGCCTTGTAAACATAAGTTTCACTCAAAGTGT  534
            |||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct  348  TGGTGTAAAGGTGACGTGGCGGCGGAGATGCCGTGTGAACACAAGTTTCACTCAAAGTGT  407

Query  535  GTGGAGGAGTGGTTAGGGAGGCACGCCACGTGTCCTATGTGTAGGTATGAGATGCCTGTT  594
            |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  408  GTGGAGGAATGGTTAGGGATGCACGCCACGTGTCCTATGTGTAGGTATGAGATGCCTGTT  467

Query  595  gaagaagttgaagaagagaagaagaTTGGGATTTGGATTGGTTTCTCCATTAACGCCGGC  654
            |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  468  GAAGAAGTGGAAGAAGAGAAGAAGGTTGGGATTTGGATTGGTTTCTCCATTAACGCCGGC  527

Query  655  GACAGAAGAAACTAAGAAGACGGAGGAAGAAGAAGTTAAAAGTGACTCGAACCCTC  710
            || |||||||||  ||||||||||||||||||||||| || |||||||||||||||
Sbjct  528  GAGAGAAGAAACGCAGAAGACGGAGGAAGAAGAAGTTGAA-GTGACTCGAACCCTC  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30193350264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5