BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14205.1

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471582 jgi|Araly1|471582|fgenesh2_kg.1__1536__AT1G14205.1         529    1e-149


> Ahg471582 jgi|Araly1|471582|fgenesh2_kg.1__1536__AT1G14205.1
Length=666

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 326/345 (94%), Gaps = 3/345 (1%)
 Strand=Plus/Plus

Query  50   ATGGCTGCTTTGACTTCTCTTTCTACTGTTCAGTTTAGAGTCTCTGACATTCTCGGAACT  109
            ||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTGCTTTGAGTTCTCTCTCTTTTGTTCAGTTTAGAGTCTCTGACATTCTCGGAACT  60

Query  110  CGTTTGAAACCTTATCCCCAGTTTCCAATTCGAATAACAACTATGTCTGTAGTAAAGCCG  169
            ||| |||||||||||||||| ||||||||||||||||||| ||||||||| |  ||||||
Sbjct  61   CGTCTGAAACCTTATCCCCAATTTCCAATTCGAATAACAAATATGTCTGT-G--AAGCCG  117

Query  170  TTTGTGATTGAAGCGAGAGGGAACACTCGAGTGGAGAGTCCGAAAACTAGGAACAGGAGG  229
            |||||||||||||| ||||||||  ||||||| |||||||||||||| ||||||||||||
Sbjct  118  TTTGTGATTGAAGCAAGAGGGAATTCTCGAGTCGAGAGTCCGAAAACCAGGAACAGGAGG  177

Query  230  AGCAGGAAGAAGTTTACTGGAACACAAACAAAACCAAGACTTTCAGTGTTCTGTTCAGAT  289
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  AGCAGGAAGAAGTTTAATGGAACACAAACAAAACCAAGACTTTCAGTGTTCTGTTCAGAT  237

Query  290  AAACAACTCTATGCTATGTTGGTTGATGACTTTAACAAAAAGTGTTTGTTCTACGCTAGT  349
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  238  AAACAACTCTATGCTATGTTGGTGGATGACTTCAACAAAAAGTGTTTGTTCTACGCTAGT  297

Query  350  ACATTGCAGAAGTCCATTCGCGGAGATCCTCCATGTACTGTCATT  394
            |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  298  ACATTGCAGAAGTCCATTCGTGGAGATCCTCCATGTACTGTCATT  342


 Score =  255 bits (138),  Expect = 2e-67
 Identities = 149/154 (97%), Gaps = 2/154 (1%)
 Strand=Plus/Plus

Query  395  GAAGCAGCTAAACGGGTTGGAGAAGAGCTCATTAAGGCTTCTATTGACCTCAAGATTAAC  454
            |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  514  GAAGCAGCAAAACGGGTTGGAGAAGAGCTCATTAAGGCTTCTGTTGACCTCAAGATTAAC  573

Query  455  GAGATATC-GTCTTATGATCGAAATGGAAATAAACGAGGCGAAAGAATGCAAGCCTTTGA  513
            |||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  574  GAGATATCAG-CTTATGATCGAAATGGAAATAAACAAGGCGAAAGAATGCAAGCCTTTGA  632

Query  514  AATTGCAATTGCGCAACACGGGTTCTTACCGTAG  547
            ||||||||||||||||||||||||||||||||||
Sbjct  633  AATTGCAATTGCGCAACACGGGTTCTTACCGTAG  666



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21023729539


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5