BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14205.1 Length=575 Score E Sequences producing significant alignments: (Bits) Value Ahg471582 jgi|Araly1|471582|fgenesh2_kg.1__1536__AT1G14205.1 529 1e-149 > Ahg471582 jgi|Araly1|471582|fgenesh2_kg.1__1536__AT1G14205.1 Length=666 Score = 529 bits (286), Expect = 1e-149 Identities = 326/345 (94%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 50 ATGGCTGCTTTGACTTCTCTTTCTACTGTTCAGTTTAGAGTCTCTGACATTCTCGGAACT 109 ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTGCTTTGAGTTCTCTCTCTTTTGTTCAGTTTAGAGTCTCTGACATTCTCGGAACT 60 Query 110 CGTTTGAAACCTTATCCCCAGTTTCCAATTCGAATAACAACTATGTCTGTAGTAAAGCCG 169 ||| |||||||||||||||| ||||||||||||||||||| ||||||||| | |||||| Sbjct 61 CGTCTGAAACCTTATCCCCAATTTCCAATTCGAATAACAAATATGTCTGT-G--AAGCCG 117 Query 170 TTTGTGATTGAAGCGAGAGGGAACACTCGAGTGGAGAGTCCGAAAACTAGGAACAGGAGG 229 |||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||| Sbjct 118 TTTGTGATTGAAGCAAGAGGGAATTCTCGAGTCGAGAGTCCGAAAACCAGGAACAGGAGG 177 Query 230 AGCAGGAAGAAGTTTACTGGAACACAAACAAAACCAAGACTTTCAGTGTTCTGTTCAGAT 289 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 AGCAGGAAGAAGTTTAATGGAACACAAACAAAACCAAGACTTTCAGTGTTCTGTTCAGAT 237 Query 290 AAACAACTCTATGCTATGTTGGTTGATGACTTTAACAAAAAGTGTTTGTTCTACGCTAGT 349 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 238 AAACAACTCTATGCTATGTTGGTGGATGACTTCAACAAAAAGTGTTTGTTCTACGCTAGT 297 Query 350 ACATTGCAGAAGTCCATTCGCGGAGATCCTCCATGTACTGTCATT 394 |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 298 ACATTGCAGAAGTCCATTCGTGGAGATCCTCCATGTACTGTCATT 342 Score = 255 bits (138), Expect = 2e-67 Identities = 149/154 (97%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 395 GAAGCAGCTAAACGGGTTGGAGAAGAGCTCATTAAGGCTTCTATTGACCTCAAGATTAAC 454 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 514 GAAGCAGCAAAACGGGTTGGAGAAGAGCTCATTAAGGCTTCTGTTGACCTCAAGATTAAC 573 Query 455 GAGATATC-GTCTTATGATCGAAATGGAAATAAACGAGGCGAAAGAATGCAAGCCTTTGA 513 |||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 574 GAGATATCAG-CTTATGATCGAAATGGAAATAAACAAGGCGAAAGAATGCAAGCCTTTGA 632 Query 514 AATTGCAATTGCGCAACACGGGTTCTTACCGTAG 547 |||||||||||||||||||||||||||||||||| Sbjct 633 AATTGCAATTGCGCAACACGGGTTCTTACCGTAG 666 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21023729539 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5