BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14210.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471583 jgi|Araly1|471583|fgenesh2_kg.1__1537__AT1G14210.1 1295 0.0
> Ahg471583 jgi|Araly1|471583|fgenesh2_kg.1__1537__AT1G14210.1
Length=867
Score = 1295 bits (701), Expect = 0.0
Identities = 817/872 (94%), Gaps = 11/872 (1%)
Strand=Plus/Plus
Query 17 AAAACACATGAGAGGAATCATCATCGTAAGCTTGTTAATTTTACAGAGCCTTGTCGTGTC 76
||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||
Sbjct 1 AAAACACATGAGAGGAATCGTCATCGTAAACTTACTAATTTTACAGAGTCTTGTCGTGTC 60
Query 77 TTCGTCTCAAACAGAACCAGACTTCAATTTCTTCTACTGGGTCAACTACTGGCCAGGAGC 136
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGTCTCCAACAGCACCAGACTTCAATTTCTTCTACTGGGTCAACTACTGGCCAGGAGC 120
Query 137 AATATGCGATAGCCAAAAAGGATGTTGCCCTCCAACGAAAGGCAACACAGCGTCGGATTT 196
|||||||||||||||||||||||| || |||||||||||||||||||| ||| | |||||
Sbjct 121 AATATGCGATAGCCAAAAAGGATGCTGTCCTCCAACGAAAGGCAACACGGCGCCCGATTT 180
Query 197 TATCATCCATGGACTCTGGCCTCAGTTCAACAATGGCACTTGGCCTGCGTTTTGCGACCA 256
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 181 TATCATCCATGGACTCTGGCCTCAATTCAACAATGGAACTTGGCCTGCGTTTTGCGACCA 240
Query 257 AACCAATCTCTTCGATATCTCCAAGATATCAGATCTAGTCTGCCAAATGGAAAAGAAATG 316
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 AACCAATCTCTTCGATATCTCCAAGATATCAGATCTAGTATGCCAAATGGAAAAGAAATG 300
Query 317 GACAGAGTGGGGAGTGTGGGCATGTCCAAGTAACGAGACAAATCTATGGGAACACGAGTG 376
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GACAGAGTGGGGAGTGTGGGCATGTCCAAGTAACGAGACAAATCTATGGGAGCACGAGTG 360
Query 377 GAATAAGCATGGCACCTGTGTCCAATCTATCTTCGACCAACACTCTTACTTCCGTACCAA 436
||| ||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 361 GAACAAGCATGGCACATGTGTCCAATCTATCTTCGATCAACACTCTTACTTCCTTACCAA 420
Query 437 TCTCAAATTCAAACACAAAGTCCATCTCCTCAACATCCTTATACAAAAAGGTATTAAACC 496
||||||||||||| |||||||| |||||||||||||||||| ||||||||| || |||||
Sbjct 421 TCTCAAATTCAAATACAAAGTCAATCTCCTCAACATCCTTAAACAAAAAGGAATCAAACC 480
Query 497 AAATGATGGGTTTTACAGTTTGGACGAGATCAAAAATGCGATCAAATGCGCGATCGGATT 556
||||||||| |||||| ||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 481 AAATGATGGATTTTACGGTTTGGATGAGATCAAGAATGCGATCAAATGCGTGATCGGATT 540
Query 557 TGCACCGGGTATCGAATGCAATGAAGATGTAAAGGGGAATAAGCAGCTTTTCCAGATCTA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCACCGGGTATCGAATGCAATGAAGATGTAAAGGGGAATAAGCAGCTTTTCCAGATCTA 600
Query 617 TATATGTCTTGATAATTACGCAAAAGAGTTTGTGGAATGCCCGTATGTTCCGGATAAATC 676
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TATATGTCTTGATAATTACGCAAAAGAGTTTGTGGAGTGCCCGTATGTTCCGGATAAATC 660
Query 677 ATGTGCTTCCAAGATCAAGTTTCCAA-GTCTTCCTGAGAGAGATTCTCTTAATGAGTCTC 735
|||||||||||||||||||||||||| || |||| |||||||||||||||| |||||| |
Sbjct 661 ATGTGCTTCCAAGATCAAGTTTCCAAAGT-TTCCGGAGAGAGATTCTCTTAGTGAGTCCC 719
Query 736 TAAGTGTGAT-GTCCTCTGTTTCAACTACCTaaaaaa-aaGAGtttttttGTGTTTCAAT 793
|||||||||| | ||||||||||||| ||||| |||| |||||| ||| ||||||||||
Sbjct 720 TAAGTGTGATAG-CCTCTGTTTCAACGACCTAGAAAACAAGAGTGTTT--GTGTTTCAAT 776
Query 794 AAGAGAATGCAGGTGA-A-GCTTCTATAAGTTTGACGAATGTGATGAGTCTTTGAGTTCT 851
|||||| ||||||||| | ||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 777 AAGAGAGTGCAGGTGAGAAGCTGCTATAAGTATGACGAAGGTGATGAGTCTTTGAGTTCT 836
Query 852 ATA-ACTAAAATGAATGTGATGAGTCTTTGAG 882
||| | || |||||||| |||||||||||||
Sbjct 837 ATATA-TATGATGAATGTAATGAGTCTTTGAG 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5