BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14220.1
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312421 jgi|Araly1|312421|fgenesh1_pm.C_scaffold_1001201 998 0.0
> Ahg312421 jgi|Araly1|312421|fgenesh1_pm.C_scaffold_1001201
Length=681
Score = 998 bits (540), Expect = 0.0
Identities = 640/688 (93%), Gaps = 8/688 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGCAAAGGGTTGTGTTAACGTTCTCCTCAAGCTTCTAGTGTTTCAAGGTCTTTTC 60
||||||||||| ||||| | | || |||||||||||||| |||||||||||||||||
Sbjct 1 ATGGGAGCAAAAGGTTG-G-T----TTATCCTCAAGCTTCTAATGTTTCAAGGTCTTTTC 54
Query 61 GTTTCACGTCCTCAAGAAGACTTTGATTTCTTCTACTTCGTTCTTCAGTGGCCTGGAGCC 120
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 55 GTTTCACGTCCGCAAGAAGACTTTGATTTCTTCTACTTAGTTCTTCAGTGGCCAGGAGCA 114
Query 121 TATTGCGATACATCGCGTGCTTGTTGCTATCCAACATCCGGTAAACCCGCTGCAGATTTT 180
||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 115 TATTGTGATACAAAGCGTGCTTGTTGCTATCCAACATCCGGTAAACCTGCGGCAGATTTT 174
Query 181 GGTATCCACGGTCTATGGCCTAATTATAACGGTGGTTCATGGCCATCAAATTGTGATCCC 240
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 175 GGTATCCATGGTCTTTGGCCTAATTATAATGGTGGTTCATGGCCATCAAATTGTGATCCC 234
Query 241 GATAGCCAATTTGATAGATCTCAGATATCGGATCTCGTAAGTAGTTTGAAAAAGAATTGG 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GACAGCCAATTTGATAGATCTCAGATATCGGATCTCGTAAGTAGTTTGAAAAAGAATTGG 294
Query 301 CCAACACTATCATGTCCAAGCAACGAAGGGTTCAACTTTTGGGAACACGAATGGGAGAAA 360
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 295 CCAACACTATCGTGTCCGAGCAACGAAGGGTTCAAATTTTGGGAACACGAATGGGAGAAA 354
Query 361 CACGGTACATGCTCCGAATCCGTAATGGACCAACATGAGTACTTTGaaaatgctcttaaa 420
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 CACGGCACATGCTCCGAATCCGTAATGGACCAACATGACTACTTTGAAAATGCTCTTAAA 414
Query 421 ctcaaacaaaaagcaaatctcctccaaatcctcaaaaactccGGAATTAATCCGGATGAT 480
|| ||| ||||||| |||||||| ||||| |||| ||||||||||||||| |||||||||
Sbjct 415 CTGAAAGAAAAAGCCAATCTCCTTCAAATACTCACAAACTCCGGAATTAACCCGGATGAT 474
Query 481 GGATTCTACAATCTGGATAA-GATCACCAACGCGATAAAAGATGGAATTGGATTTACGCC 539
|||||||||| |||| | || ||||||||| ||||||||| |||| ||||||||||| ||
Sbjct 475 GGATTCTACAGTCTG-ACAAAGATCACCAATGCGATAAAAAATGGGATTGGATTTACACC 533
Query 540 AGGAATAGAATGTAACAAAGATCCGGAGCGTAATGCCCAGCTTCATCAGATCTATATTTG 599
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 534 AGGAATCGAATGTAACAAAGATCCGGAGCGAAATGACCAGCTTCATCAGATCTATATTTG 593
Query 600 TGTTGATACGTCAGGAACTGAGTTTATCGAATGTCCAGTTTTGCCTAGAGGAAGCTGTCC 659
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 TGTTGATACATCAGGAACTGAGTTTATCGAATGTCCAGTTTTGCCTAGAGGAAGATGTCC 653
Query 660 ATCTCAAATCCAGTTTTCTAAGTTCTAA 687
||||||| ||||||||||||||||||||
Sbjct 654 ATCTCAACTCCAGTTTTCTAAGTTCTAA 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25237371054
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5