BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14230.1
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911216 jgi|Araly1|911216|Al_scaffold_0001_1470 2346 0.0
Ahg471586 jgi|Araly1|471586|fgenesh2_kg.1__1540__AT1G14240.2 1314 0.0
Ahg936076 jgi|Araly1|936076|scaffold_500267.1 841 0.0
> Ahg911216 jgi|Araly1|911216|Al_scaffold_0001_1470
Length=1515
Score = 2346 bits (1270), Expect = 0.0
Identities = 1438/1519 (95%), Gaps = 11/1519 (1%)
Strand=Plus/Plus
Query 232 ATGCAACGGTCTAATGCTCGTTCCAGGTCG-AATATCAATTCAGATATG-GTAGATCCTC 289
|||||||||| ||||||||||||| ||| | ||| |||| ||||||||| | ||||||||
Sbjct 1 ATGCAACGGTTTAATGCTCGTTCCGGGTTGAAAT-TCAAATCAGATATGAG-AGATCCTC 58
Query 290 CCGAGGTTCAGACTTCACCTGGCAACCACCGATCATCGCCGTCCACCGCCGCCAAACCCA 349
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 59 CCGAGGTTCAGACTTCACCTGGCCACCACCGATCATCGCCGTCCACCGTCGCTAAACCCA 118
Query 350 AGTCGAAACGA-ACAAAATCGATTATCTTCGTAATCGTCGCTTGTGTAACTATTGCCTTG 408
||| ||| | | || ||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct 119 AGTGGAAGC-ACACCAAATCGATTGTCTTCGTAATCGTCTCTTGTGTAACTATTGCGTTG 177
Query 409 GGTTTATTATTCATTGGCTATTCAATTTTACGCTCCGGAAGGAATCGGAGAGTTTCACTT 468
|| ||||| || || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 GGATTATTCTTTGTTTGCTATTCAATTTTACGCTCCGGAAGGAATCGGAGAGTTTCGCTC 237
Query 469 CACTACAGCGTCATTATCGATGGTGGGAGTTCAGGGACCCGAGTTCATGTGTTCGGGTAC 528
| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 238 CGGTACAGCGTCATAATCGATGGCGGGAGTTCAGGGACCCGAGTTCATGTGTTCGGGTAC 297
Query 529 CGGATTGAATCCGGTAAACCGGTTTTCGATTTCGGAGAGGAGAATTACGCTAGTTTGAAG 588
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 298 CGGATTGAATCCGGTAAACCGGTTTTCGATTTCGGAGAGGAGAGTTATGGTAGTTTGAAG 357
Query 589 TTGAGTCCTGGATTGTCTGCGTATGCTGATAATCCGGAGGGAGTGAGTGAGTCAGTGACG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTGAGTCCTGGATTGTCTGCGTATGCTGATAATCCGGAGGGAGTGAGTGAGTCAGTGACG 417
Query 649 GAGCTTGTGGAATTCGCTAAGAAGAGAGTTCATAAGGGGAAGTTGAAGAAGAGTGATATT 708
|||||||||||||| || ||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 418 GAGCTTGTGGAATTTGCGAAGAAGAGAGTTCCCAAGGGAAAGTTGAAGAAGAGTGACATT 477
Query 709 AGGTTAATGGCTACTGCTGGAATGAGATTGCTTGAATTGCCTGTTCAAGAACAGATTCTT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGGTTAATGGCTACTGCTGGAATGAGATTGCTTGAATTGCCTGTTCAAGAACAGATTCTT 537
Query 769 GATGTTACTAGAAGAGTTCTTAGATCTTCTGGGTTTGATTTTCGAGACGAATGGGCTTCT 828
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 538 CATGTTACTAGAAGAGTTCTTAGATCTTCTGGGTTTGAATTTCGAGAGGAATGGGCTTCT 597
Query 829 GTTATCTCTGGATCTGATGAAGGTGTATATGCTTGGGTTGTTGCTAATCATGCGCTCGGT 888
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 598 GTTATCTCTGGATCTGATGAAGGTGTATATGCTTGGGTTGTTGCTAACCATGCACTCGGT 657
Query 889 TCGCTTGGAGGTGAACCTTTAAAAACAACGGGAATTGTTGAACTCGGTGGGGCTTCTGCC 948
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct 658 TCGCTTGGAGGTGAACCTTTGAAAACAACTGGAATTGTTGAACTCGGTGGGGCTTCTACC 717
Query 949 CAGGTTACATTTGTGTCAACTGAGCTTGTGCCTTCTGAGTTCTCGCGTACGTTAGCCTAT 1008
||||| |||||||| |||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 718 CAGGTGACATTTGTATCAAGTGAGCTTGTGCCTTCTGAGTTCTCGCGTTCGTTAGACTAT 777
Query 1009 GGAAATGTCTCATACAATCTCTACAGTCACAGCTTCCTCGATTTTGGACAGGATGCAGCA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 GGAAATGTCTCATACAATCTCTACAGTCACAGCTTCCTCGATTTTGGACAGGATGTAGCA 837
Query 1069 CAAGAAAAGTTATCGGAAT-CACTATACAACTCAGC---TGCAAACTCTACAGGGGAAGG 1124
||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||
Sbjct 838 CAAGAAAAGTTATCGGAATTC-CTACACAACTCAGCAGCTGCAAACTCTACAGGGGAAGG 896
Query 1125 AATAGTTCCTGACCCTTGTATTCCTAAAGGGTATATCCTTGAAACAAATTTACAAAAGGA 1184
|||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||
Sbjct 897 AATAGTTCCTGACCCTTGTACTCCAAAAGGGTATATCCTTAAAACAAATTTACAAAAAGA 956
Query 1185 CTTACCTGGATTCTTGGCTGATAAAGGCAAATTTACAGCCACCCTTCAAGCTGCTGGTAA 1244
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 957 CTTACCTGGATTCTTGGCTGATAAAGGAAAATTTATAGCCACCCTTCAAGCTGCTGGTAA 1016
Query 1245 TTTCTCAGAGTGTCGATCTGCTGCATTTGCCATGTTGCAGGAAGAAAAAGGGAAATGTAC 1304
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1017 TTTCTCAGAGTGTCGATCTGCTGCATTTGCCATGTTGCAGGAAGGAAAAGGGAAATGTAC 1076
Query 1305 TTATAAGCGTTGTTCTATTGGATCAATATTCACACCTAATCTTCAAGGAAGTTTTTTGGC 1364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTATAAGCATTGTTCTATTGGATCAATATTCACACCTAATCTTCAAGGAAGTTTTTTGGC 1136
Query 1365 TACAGAGAATTTCTTCCACACATCCAAGTTCTTTGGGTTGGGAGAAAAAGAGTGGCTGTC 1424
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1137 TACGGAGAATTTCTTCCACACCTCCAAGTTCTTTGGGTTGGGAGAAAAAGATTGGCTGTC 1196
Query 1425 TGAAATGATTTTGGCCGGAAAGAGATTCTGTGGAGAAGAATGGTCAAAATTGAAAGTGAA 1484
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1197 TGAAATGATTTTGGCCGGAAATAGATTCTGTGGAGAAGATTGGTCGAAATTGAAAGTGAA 1256
Query 1485 ATATCCAACATTTAAGGACGAGAATTTGCTTCGGTATTGCTTCTCATCAGCATATATTAT 1544
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 ATATCCAACATTTAAGGACGAGAATTTGCTTCGGTATTGTTTCTCATCAGCATATATTAT 1316
Query 1545 CTCAATGCTTCATGATAGTCTTGGTGTTGCTCTTGATGATGAAAGAATCAAGTATGCAAG 1604
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1317 ATCAATGCTTCATGATAGTCTTGGTGTTGCTCTTGATGACGAAAGAATCAAGTATGCAAG 1376
Query 1605 TAAAGCAGGAGAAGAAGACATACCACTAGATTGGGCATTGGGTGCTTTTATCCTTAATAC 1664
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TAAAGCCGGAGACGACGACATACCACTAGATTGGGCATTGGGTGCTTTTATCCTTAATAC 1436
Query 1665 TGCCACAGCCACTTTTGATTACAGTGGTAAATCTAGAAAAATTCTTGACTTGAGTAATGT 1724
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1437 TGCCACAGCCACTTTTGATTACAGTGGTAAATATAGAAAAATTCTTGACTTGAGTAATGT 1496
Query 1725 AGCCAAATACAAAATATGA 1743
|||||||||||||| ||||
Sbjct 1497 AGCCAAATACAAAACATGA 1515
> Ahg471586 jgi|Araly1|471586|fgenesh2_kg.1__1540__AT1G14240.2
Length=1690
Score = 1314 bits (711), Expect = 0.0
Identities = 1107/1293 (86%), Gaps = 47/1293 (4%)
Strand=Plus/Plus
Query 472 TACAGCGTCATTATCGATGGTGGGAGTTCAGGGACCCGAGTTCATGTGTTCGGGTACCGG 531
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 265 TACAGCGTCATTATCGATGCCGGGAGTTCAGGGACCCGAGTTCATGTGTTCGGGTACTGG 324
Query 532 ATTGAATCCGGTAAACCGGTTTTCGATTTCGGAGAGGAGA-ATTACGCTAGTTTGAAGTT 590
|||| ||||| ||||| ||||||||||||||||| || | ||||||||| | |||||||
Sbjct 325 TTTGAGTCCGGGAAACCCGTTTTCGATTTCGGAGA-GAAACATTACGCTAATCTGAAGTT 383
Query 591 GAGTCCTGGATTGTCTGCGTATGCTGATAATCCGGAGGGAGTGAGTGAGTCAGTGACGGA 650
|| |||||| ||||| ||||||||||||||||||||||||| || | |||||||||| |
Sbjct 384 GACTCCTGGTTTGTCGGCGTATGCTGATAATCCGGAGGGAGCAAGCGTGTCAGTGACGAA 443
Query 651 GCTTGTGGAATTCGCTAAGAAGAGAGTTCATAAGGGGAA-GTTGAAGAAGAGTGATATTA 709
||||||||||||||| ||||||||| ||| | | ||| ||||| ||| ||||| ||||
Sbjct 444 GCTTGTGGAATTCGCCAAGAAGAGAATTC-CCACGAGAATGTTGAGGAAAAGTGACATTA 502
Query 710 GGTTAATGGCTACTGCTGGAATGAGATTGCTTGAATTGCCTGTTCAAGAACAGATTCTTG 769
|||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 503 GGTTAATGGCGACAGCTGGGATGAGATTGCTTGAAGTGCCTGTTCAAGAACAGATTCTTG 562
Query 770 ATGTTACTAGAAGAGTTCTTAGATCTTCTGGGTTTGAT-TTTCGAGACGAATGGGCTTCT 828
||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 563 ATGTTACAAGAAGAGTTCTTAGATCTTCTGGGTTT-ATGTTTCGAGACGAATGGGCTTCT 621
Query 829 GTTATCTCTGGATCTGATGAAGGTGTATATGCTTGGGTTGTTGCTAATCATGCGCTCGGT 888
|||||||||||||||||||||||| ||||||||||| || |||| ||| | || ||||||
Sbjct 622 GTTATCTCTGGATCTGATGAAGGTATATATGCTTGGATTATTGCCAATTACGCACTCGGT 681
Query 889 TCGCTTGGAGGTGAACCTTTAAAAACAACGGGAATTGTTGAACTCGGTGGGGCTTCTGCC 948
||||||||| ||| || || |||||||||| |||||||||||||| ||||||||||||
Sbjct 682 TCGCTTGGAACTGATCCGTTGGAAACAACGGGGATTGTTGAACTCGGCGGGGCTTCTGCC 741
Query 949 CAGGTTACATTTGTGTCAACTGAGCTTGTGCCTTCTGAGTTCTCGCGTACGTTAGCCTAT 1008
||||| ||||||||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct 742 CAGGTGACATTTGTGTCAAGTGAGCTTGTGCCTTCTGAGTTCTCGCGTACCATATCCTAT 801
Query 1009 GGAAATGTCTCATACA-ATCTCTACAGTCACAGCTTCCTCGATT-TTGGACAGGATGCAG 1066
|||||||| ||||||| | ||||||||||||| |||||| ||| | ||| |||||||||
Sbjct 802 GGAAATGTTTCATACACA-ATCTACAGTCACAGTTTCCTCAATTATGGGA-AGGATGCAG 859
Query 1067 CAC-AAGAAAAGTTATCGGAATCACTATACAACTCAGCTGCAAACTCTACAGGGGAAGGA 1125
||| || ||| ||||| |||| |||| | ||||||||| |||||||||||||| |||
Sbjct 860 CACTAA-AAAGGTTATTGGAAACACTCCAAAACTCAGCT---AACTCTACAGGGGAGGGA 915
Query 1126 ATAGTTCCTGACCCTTGTATTCCTAAAGGGTATATCCT-TGAAACAAATTTACAA-AAGG 1183
|||||| |||||||||| |||||||||||| || || || ||||||| | || ||
Sbjct 916 ATAGTTGAAGACCCTTGTACTCCTAAAGGGTACAT-CTACGACACAAATTCA-AAGAAAT 973
Query 1184 ACTT-A-CCTGGATTCTTGGCTGAT-AAAGGCAAATTTACAGCCACCCTTCAAGCTGCTG 1240
| || | || |||||||| |||||| ||| ||||||| | || | ||||| |||||||||
Sbjct 974 A-TTCATCC-GGATTCTTAGCTGATGAAA-GCAAATTAAAAGGCTCCCTTGAAGCTGCTG 1030
Query 1241 GTAATTTCTCAGAGTGTCGATCTGCTGCATTTGCCA-TGTTGCAGGAAGAAAAAGGGAAA 1299
||||||||||| | || ||||| ||| | |||| || | ||||| |||| ||||| |||
Sbjct 1031 GTAATTTCTCAAAATGCCGATCCGCTACGTTTG-CACTTTTGCAAGAAGGAAAAGAGAAC 1089
Query 1300 TGTAC-TTATAAGCGTTGTTCTATTGGATCAATATTCACACCTAATCTTCAAGGAAGTTT 1358
||| | ||| ||| ||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 1090 TGT-CAATATGAGCATTGTTCTATTGGATCAACATTCACACCTGATCTTCAAGGGAGTTT 1148
Query 1359 TTTGGCTACA-GAGAATTTCTTCCACACATCCAAGTTCTTTGGGTTGGGAGAAAAAGAG- 1416
|||||||||| | ||||||| | |||| |||||||||||| ||||| || ||||| |
Sbjct 1149 TTTGGCTACATCA-AATTTCTACTACACCGCCAAGTTCTTTGAGTTGGAAG-AAAAGGGT 1206
Query 1417 TGGCTGTCTGAAATGATTTTGGCCGGAAAGAGAT-TCTGTGGAGAAGAATGGTCAAAATT 1475
||| |||||||| ||||| || |||||||||| | ||||||||||||||||| ||| |
Sbjct 1207 TGGTTGTCTGAATTGATTCCAGCTGGAAAGAGATAT-TGTGGAGAAGAATGGTCGAAACT 1265
Query 1476 GAAAGTGAAATATCCAACATTTAAGGACGAGA-ATTTGCTTCGG-TATTGCTTCTCATCA 1533
|| | || |||| |||||| | | || || | |||||| | || |||||||||||||||
Sbjct 1266 GATATTGGAATACCCAACAACTGATGAAGA-ATATTTGCGT-GGCTATTGCTTCTCATCA 1323
Query 1534 GCATATATTATCTCAATGCTTCATGATAGTCTTGGTGTTGCTCTTGATGATGAAAGAATC 1593
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1324 GCATATATTATCTCAATGCTTCATGATAGTCTTGGTATTGCTCTTGATGATGAAAGAATC 1383
Query 1594 AAGTATGCAAGTAAAGCAGGAGAAGAAGACATACCACTAGATTGGGCATTGGGTGCTTTT 1653
| |||||||| | ||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 1384 ACGTATGCAAATGAAGCAGGAGAAAAACACATACCACTAGATTGGGCATTGGGCGCTTTT 1443
Query 1654 ATCCTTA-ATACTGCCACAGCCACTTTTGATTACAGTGGTAAATCTAGAAAA-ATTCTTG 1711
|| || | || ||| |||| |||||| ||||||||||||||||||||||||| || || |
Sbjct 1444 ATACT-AGATGCTGTCACACCCACTTCTGATTACAGTGGTAAATCTAGAAAATAT-CTAG 1501
Query 1712 ACTTG-A-GTAATGTA--GCCAAATACAAAATA 1740
||| | |||| ||| |||||||||||||||
Sbjct 1502 GCTTTTAAGTAACGTATAGCCAAATACAAAATA 1534
> Ahg936076 jgi|Araly1|936076|scaffold_500267.1
Length=1703
Score = 841 bits (455), Expect = 0.0
Identities = 1029/1297 (79%), Gaps = 76/1297 (6%)
Strand=Plus/Plus
Query 364 AAATCGATTATCTTCG-TAATCGTCGCTTGTGTAACTAT--TGCCTTGGGTTTAT-TATT 419
||||||| | || | | ||| ||| |||| | || |||| || |||||||| | | ||
Sbjct 166 AAATCGAATCTCAT-GTTAACCGTTGCTTCTATATCTATAGTG-TTTGGGTTTCTCT-TT 222
Query 420 C-ATTGGCTATTCAATTTTACGCTCCGGAAGG-AATCGGAGAGTTTCACTTCACTACAGC 477
| ||| |||||||||||| |||||| || |||| ||||| || |||| || |||
Sbjct 223 CTATT--CTATTCAATTTTGTTCTCCGG-TGGTAATCTGAGAGGATCGCTTCGTTATAGC 279
Query 478 GTCATTATCGATGGTGGGAGTTCAGGGACCCGAGTTCATGTGTTCGGGTACCGGATTGAA 537
||| | ||||| ||||| ||| ||||||| ||| | |||||||| ||||||||||||||
Sbjct 280 GTCGTGATCGACGGTGGAAGTACAGGGACACGAATCCATGTGTTTGGGTACCGGATTGAG 339
Query 538 TCCGGTAAACCGGTTTTCGATTTCGGAGAGGA--GAATTACGCTAGTTTGAAGTTG-AGT 594
|| |||||||||||||| || ||| |||||| |||||||||||||||||||||| | |
Sbjct 340 TCGGGTAAACCGGTTTTTGAATTC--AGAGGAGCGAATTACGCTAGTTTGAAGTTGCA-T 396
Query 595 CCTGGATTGTCTGCGTATGCTGATAATCCGGAGGGAGTGAGTGAGTCAGTGACGGAGCTT 654
|| || || || |||| ||||||| |||| || |||| ||||| |||| |||||||||||
Sbjct 397 CCGGGTTTATCGGCGTTTGCTGATGATCCTGATGGAGCGAGTGTGTCATTGACGGAGCTT 456
Query 655 GTGGAATTCGCTAAGAAGAGA-G-TTCATAAGGGGAA-GTTGAAGAAGAGTGATA-TTAG 710
||||| || || | ||| || | ||| || |||| || || | ||| ||| | ||||
Sbjct 457 GTGGAGTTTGC-GA-AAGGGAGGATTCCGAA-AGGAATGTGGATGGAGACTGA-AGTTAG 512
Query 711 GTTAATGGCTACTGCTGGAATGAGATTGCTTGAATTGCCTGTTCAAGA-ACAGATTCT-T 768
||||||||| || || |||||||||||||||||||| |||||||| || | |||||||
Sbjct 513 GTTAATGGCCACGGCGGGAATGAGATTGCTTGAATTACCTGTTCAGGAGA-AGATTCTGG 571
Query 769 GATGTTACTAGAAGAGTTCTTAGATCTTCTGGGTTTGAT-TTTCGAGACGAATGGGCTTC 827
|| ||| ||||||||||||||| |||||||||| || | |||||||| |||||||||||
Sbjct 572 GA-GTTGCTAGAAGAGTTCTTAAATCTTCTGGG-TTCTTGTTTCGAGATGAATGGGCTTC 629
Query 828 TGTTATCTCTGGATCTGATGAAGGTGTATATGCTTGGGTTGTTGCTAATCAT-GCGCTCG 886
|||||||||||||||||| |||||||||||||||||||||||||| || | | || ||||
Sbjct 630 TGTTATCTCTGGATCTGACGAAGGTGTATATGCTTGGGTTGTTGCAAA-CTTTGCTCTCG 688
Query 887 GTTCGCTTGGAGGTGAACCT-TTAAAAACAACGGGAATTGTTGAACTCGGTGGGGCTTCT 945
|||| ||||| | ||| ||| |||||| |||| ||||||||||||||||| |||||||||
Sbjct 689 GTTCACTTGGCGCTGATCCTCTTAAAA-CAACCGGAATTGTTGAACTCGGCGGGGCTTCT 747
Query 946 GCCCAGGTTACATTTGTGTCAACTGAGCTTGTGCCTTCTGAGTTCTCGCGTACGTTAGCC 1005
|| ||||| ||||||||| ||| ||||| ||||| |||||||||| ||||| || |
Sbjct 748 GCTCAGGTGACATTTGTGCCAAGTGAGCCAATGCCTCCTGAGTTCTCACGTACAATATCA 807
Query 1006 TATGGAAATGTCTCATACAATCTCTACAGTCACAGCTTCCT-CGATTTTGGACAGGATGC 1064
| ||||||||| ||||||||||||||||||||||||||||| | ||||||| ||| ||||
Sbjct 808 TTTGGAAATGTTTCATACAATCTCTACAGTCACAGCTTCCTTC-ATTTTGGGCAGAATGC 866
Query 1065 AGCACAAGAAAAGTTATCGGAATCACTA-T---AC-A-AC--T---C-AGCT--GCAAAC 1110
||||| || ||||||| || ||||| | | | || | | |||| | || |
Sbjct 867 TGCACATGATAAGTTATGGGGTTCACTTCTCTTAAGAGACCATAATCCAGCTATGGAA-C 925
Query 1111 TCTACAGGGGAAGGAATAGTTCCTGACCCTTGTATTCCTAA-AGGGTATATCCTTGAAAC 1169
||||| ||||| ||| || | ||||||||| ||| || |||||||| ||| || |
Sbjct 926 -CTACACGGGAACAAATCTTTACAGACCCTTGTGCTCC-AAGAGGGTATAACCTCGACGC 983
Query 1170 AAATTTACAAAAGGACTTACCTGGA-TTCTTGGCTGAT-AAAGGCA-AATTTACAGCCAC 1226
||| ||| ||| | ||| ||||| || || ||||| |||| || ||| | ||| |
Sbjct 984 AAACACACAGAAGCATTTATCTGGACTT-TTAGCTGAAGAAAG-CAGAATCT-CAGATTC 1040
Query 1227 CCTTCAAGCTGCTGGTAATTTCTCAGAGTGTCGATCTGCTGCATTTGCCATGTTGCAGGA 1286
||||||||| ||||||| |||| ||||||||||||||||| | || ||||| ||
Sbjct 1041 TTTTCAAGCTGGGGGTAATTACTCACAGTGTCGATCTGCTGCACTAAATATCTTGCAAGA 1100
Query 1287 AGAAAAAGGGAAATG-TACTTATAAGCGTTGTTCTATTGGATCAA-TATTCACACCTAAT 1344
|| ||| | |||||| | | ||| ||| ||||||||||||||||| | ||||| |||||
Sbjct 1101 AGGAAATGAGAAATGCT-CGTATCAGCATTGTTCTATTGGATCAACT-TTCACGCCTAAG 1158
Query 1345 CTTCAAGGAAGTTTTTTGGCTACAGAGAATTTCTTCCACACATCCAAGTTCTTTGGGTTG 1404
|||| |||||| ||||| |||||||| || ||||| |||| || |||||||||||||||
Sbjct 1159 CTTCGAGGAAGATTTTTAGCTACAGAAAACTTCTTTTACACCTCTAAGTTCTTTGGGTTG 1218
Query 1405 GGAGAAAAAGAGTGGCTGTCTGAA-ATGATTTTGGCCGGAAAGAGATTCTGTGGAGAAGA 1463
|||||||| | |||||||||| || ||||||| |||||| |||||||||||||||||||
Sbjct 1219 GGAGAAAAGGCGTGGCTGTCT-AATATGATTTCAGCCGGAGAGAGATTCTGTGGAGAAGA 1277
Query 1464 ATGGTCAAAATTGAAAGTGAAATATCCAACATTTAAGGACGAGAAT-TTGCTTCGGTATT 1522
||||| || |||| ||| ||| | ||| || | | | ||| || || ||||||||||
Sbjct 1278 TTGGTCGAAGTTGAGAGTAAAAGACCCATCACTCGATAAAGAGGATCTT-CTTCGGTATT 1336
Query 1523 GCTTCTCATCAGCATATATTATCTCAATGCTTCATGATAG-TCTTGGTGTTGCTCTTGAT 1581
| |||||||| ||||||||| | ||| ||||||| |||| | |||| || ||||||||
Sbjct 1337 GTTTCTCATCTGCATATATTGTGTCATTGCTTCACGATACAT-TTGGCATTCCTCTTGAT 1395
Query 1582 GATGAAAGAATCA-AGTATGC-AAGTAAAGCAGGAGA 1616
|||||||||||| | | ||| || | ||||||||||
Sbjct 1396 GATGAAAGAATCGGATT-TGCGAA-TCAAGCAGGAGA 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69324245900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5