BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14240.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471586 jgi|Araly1|471586|fgenesh2_kg.1__1540__AT1G14240.2 2327 0.0
Ahg911216 jgi|Araly1|911216|Al_scaffold_0001_1470 1123 0.0
> Ahg471586 jgi|Araly1|471586|fgenesh2_kg.1__1540__AT1G14240.2
Length=1690
Score = 2327 bits (1260), Expect = 0.0
Identities = 1532/1660 (92%), Gaps = 31/1660 (2%)
Strand=Plus/Plus
Query 29 GTTGAAAAATGACACCGGAGACGGATGCTCTCAAAGTTCAGATCCTACCTAAGCACCAGT 88
||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||
Sbjct 44 GTTGAAAAATGACACCGGAGATGGATGCTCTCAAGGTTCAGATCCTACCTGAGCACCAGT 103
Query 89 CATTGCCCTACACAGTCACGAAGGCCAAGT---------CGAAATCATTGATCCTGCTAG 139
||||||||||||| ||||| ||| |||| | ||||||||||||||||||||
Sbjct 104 CATTGCCCTACACGGTCACAAAGCCCAAATCAAAACCCACGAAATCATTGATCCTGCTAA 163
Query 140 TTGTCGTTTCCGTGACTATCACGTTAGGGTTATTATTATATGTTTTCAACTCAAATTCTG 199
| |||| |||||||||| ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 164 TAGTCGCTTCCGTGACTGTCACGTTAGGG---TTATTATATGTTTTCAAATCAAATTCAG 220
Query 200 TTATATCTTCCGGAAGTTTGCTTAGTCGGAGATGTAAGCTCCGGTACAGCGTCCTTATCG 259
|| |||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||
Sbjct 221 TTCTATCTTCCGGAAGTTTGCTTCGCCGGAGATGTACGCTCCGGTACAGCGTCATTATCG 280
Query 260 ACGCAGGGAGTTCAGGGACCCGGGTTCATGTGTTCGGGTACTGGTTTGAGTCCGGGAAAC 319
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 281 ATGCCGGGAGTTCAGGGACCCGAGTTCATGTGTTCGGGTACTGGTTTGAGTCCGGGAAAC 340
Query 320 CCGTTTTCGATTTCGGAGAGAAACATTACGCTAATCTGAAGTTGACTCCTGGTTTGTCTT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CCGTTTTCGATTTCGGAGAGAAACATTACGCTAATCTGAAGTTGACTCCTGGTTTGTCGG 400
Query 380 CGTATGCTGATAATCCGGAGGGAGCAAGCGTGTCAGTGACGAAGCTTGTGGAATTCGCCA 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CGTATGCTGATAATCCGGAGGGAGCAAGCGTGTCAGTGACGAAGCTTGTGGAATTCGCCA 460
Query 440 AGCAGAGGATTCCCAAGAGAATGTTCAGGAGGAGTGACATTAGGTTAATGGCGACTGCTG 499
|| |||| ||||||| ||||||||| |||| ||||||||||||||||||||||| ||||
Sbjct 461 AGAAGAGAATTCCCACGAGAATGTTGAGGAAAAGTGACATTAGGTTAATGGCGACAGCTG 520
Query 500 GGATGAGATTACTTGAAGTGCCTGTTCAAGAACAGATTCTTGAAGTTACAAGAAGAGTTC 559
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 521 GGATGAGATTGCTTGAAGTGCCTGTTCAAGAACAGATTCTTGATGTTACAAGAAGAGTTC 580
Query 560 TTAGATCTTCAGGTTTTATGTTTCGAGACGAATGGGCTAATGTTATCTCTGGATCTGATG 619
|||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 581 TTAGATCTTCTGGGTTTATGTTTCGAGACGAATGGGCTTCTGTTATCTCTGGATCTGATG 640
Query 620 AAGGTATATATTCTTGGATTACTGCCAATTACGCACTTGGTTCGCTTGGAACTGATCCGT 679
||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 641 AAGGTATATATGCTTGGATTATTGCCAATTACGCACTCGGTTCGCTTGGAACTGATCCGT 700
Query 680 TGGAAACAACGGGGATTGTTGAACTAGGCGGTGCTTCTGCGCAGGTGACATTTGTGTCAA 739
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 701 TGGAAACAACGGGGATTGTTGAACTCGGCGGGGCTTCTGCCCAGGTGACATTTGTGTCAA 760
Query 740 GTGAGCATGTGCCTCCTGAGTACTCGCGTACGAT-TGCCTACGGAAATATTTCATACACA 798
|||||| ||||||| |||||| ||||||||| || | |||| |||||| |||||||||||
Sbjct 761 GTGAGCTTGTGCCTTCTGAGTTCTCGCGTACCATAT-CCTATGGAAATGTTTCATACACA 819
Query 799 ATCTACAGTCACAGCTTCCTCGATTATGGGAAGGATGCAGCACTAAAAAAGTTATTGGAA 858
|||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 820 ATCTACAGTCACAGTTTCCTCAATTATGGGAAGGATGCAGCACTAAAAAGGTTATTGGAA 879
Query 859 AAACTCCAAAACTCAGCTAACTCTACAGTGGATGGAGTAGTTGAAGACCCTTGTACTCCT 918
| |||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 880 ACACTCCAAAACTCAGCTAACTCTACAGGGGAGGGAATAGTTGAAGACCCTTGTACTCCT 939
Query 919 AAAGGGTACATCTACGACACAAATTCAAAGAATTATTCATCCGGATTCTTAGCTGATGAA 978
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 940 AAAGGGTACATCTACGACACAAATTCAAAGAAATATTCATCCGGATTCTTAGCTGATGAA 999
Query 979 AGCAAACTTAAA-GGCTCCCTTCAAGCTGCTGGTAATTTCTCAAAATGCCGATCCGCTAC 1037
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1000 AGCAAA-TTAAAAGGCTCCCTTGAAGCTGCTGGTAATTTCTCAAAATGCCGATCCGCTAC 1058
Query 1038 GTTTGCGCTTTTGAAAGAAGGAAAAGAGAACTGTCTATATGAGCATTGTTCTATTGGATC 1097
|||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1059 GTTTGCACTTTTGCAAGAAGGAAAAGAGAACTGTCAATATGAGCATTGTTCTATTGGATC 1118
Query 1098 AACATTCACACCTGATCTTCAAGGAAGTTTTTTGGCTACAGCATCTTTCTACTACACCGC 1157
|||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 1119 AACATTCACACCTGATCTTCAAGGGAGTTTTTTGGCTACATCAAATTTCTACTACACCGC 1178
Query 1158 CAAGTTCTTTGAGTTGGAAGAAAAGGGTTGGTTGTCTGAATTGATTCCAGCTGGGAAGAG 1217
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1179 CAAGTTCTTTGAGTTGGAAGAAAAGGGTTGGTTGTCTGAATTGATTCCAGCTGGAAAGAG 1238
Query 1218 ATATTGTGGAGAAGAATGGTCGAAACTGATATTGGAATACCCAACAACTGATGAAGAATA 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 ATATTGTGGAGAAGAATGGTCGAAACTGATATTGGAATACCCAACAACTGATGAAGAATA 1298
Query 1278 TTTGCGTGGCTATTGTTTCTCAGCAGCATATACTATATCAATGCTTCATGATAGTCTTGG 1337
||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct 1299 TTTGCGTGGCTATTGCTTCTCATCAGCATATATTATCTCAATGCTTCATGATAGTCTTGG 1358
Query 1338 TATTGCTCTTGATGATGAAAGTATCACGTATGCAAGTAAAGCAGGAGAAAAACACATACC 1397
||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 1359 TATTGCTCTTGATGATGAAAGAATCACGTATGCAAATGAAGCAGGAGAAAAACACATACC 1418
Query 1398 ACTAGATTGGGCATTGGGGGCTTTTATACTAGATGTTGTAACACCCAATTCTGATTACAA 1457
|||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||||||
Sbjct 1419 ACTAGATTGGGCATTGGGCGCTTTTATACTAGATGCTGTCACACCCACTTCTGATTACAG 1478
Query 1458 TGGTAAATCTAGAAAATATCTTGGCTTTTAAGTAACGTA--GCCAAATACAAAATATGAA 1515
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 1479 TGGTAAATCTAGAAAATATCTAGGCTTTTAAGTAACGTATAGCCAAATACAAAATA-GAA 1537
Query 1516 ATCATAGTTTTGTATTTTACGTTAAACTGTGTTTGAAAGTAACTATCATGTCGTCGTTCC 1575
|||||| |||||||||||| ||||| ||||||||||| || | || ||||| ||
Sbjct 1538 ATCATAATTTTGTATTTTATATTAAATTGTGTTTGAAACTAT-TGTC--GTCGTTTTTTT 1594
Query 1576 TTTTC-ATGAAATAAGTTAGCTAAG----TTCGTAGGTGTGTATCTTCCCCTGCATGGGA 1630
|||| ||||||||| ||||||||| |||||||||| |||| | | | ||||||
Sbjct 1595 TTTTTTATGAAATAAATTAGCTAAGCCCCTTCGTAGGTGCGTATAT-CTA-T--ATGGGA 1650
Query 1631 TCGACTCTTCTCGTTTGTGGGATTGTATTATTGTAATAAA 1670
| | ||||||||||||||||||||||||||||||||||||
Sbjct 1651 TTGTCTCTTCTCGTTTGTGGGATTGTATTATTGTAATAAA 1690
> Ahg911216 jgi|Araly1|911216|Al_scaffold_0001_1470
Length=1515
Score = 1123 bits (608), Expect = 0.0
Identities = 1084/1308 (83%), Gaps = 56/1308 (4%)
Strand=Plus/Plus
Query 237 GCTCCGGTACAGCGTCCTTATCGA-CGCAGGGAGTTCAGGGACCCGGGTTCATGTGTTCG 295
|||||||||||||||| | ||||| || ||||||||||||||||| |||||||||||||
Sbjct 234 GCTCCGGTACAGCGTCATAATCGATGGC-GGGAGTTCAGGGACCCGAGTTCATGTGTTCG 292
Query 296 GGTACTGGTTTGAGTCCGGGAAACCCGTTTTCGATTTCGGAGA-GAAACATTACGCTAAT 354
||||| || |||| ||||| ||||| ||||||||||||||||| || | ||| | || |
Sbjct 293 GGTACCGGATTGAATCCGGTAAACCGGTTTTCGATTTCGGAGAGGAGA-GTTATGGTAGT 351
Query 355 CTGAAGTTGACTCCTGGTTTGTCTTCGTATGCTGATAATCCGGAGGGAGCAAGCGTGTCA 414
||||||||| |||||| |||||| |||||||||||||||||||||||| || | ||||
Sbjct 352 TTGAAGTTGAGTCCTGGATTGTCTGCGTATGCTGATAATCCGGAGGGAGTGAGTGAGTCA 411
Query 415 GTGACGAAGCTTGTGGAATTCGCCAAGCAGAGGA-TTCCCAAGAGAATGTTCAGGAGGAG 473
|||||| ||||||||||||| || ||| ||| || |||||||| ||| ||| | || |||
Sbjct 412 GTGACGGAGCTTGTGGAATTTGCGAAGAAGA-GAGTTCCCAAGGGAAAGTTGAAGAAGAG 470
Query 474 TGACATTAGGTTAATGGCGACTGCTGGGATGAGATTACTTGAAGTGCCTGTTCAAGAACA 533
|||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||
Sbjct 471 TGACATTAGGTTAATGGCTACTGCTGGAATGAGATTGCTTGAATTGCCTGTTCAAGAACA 530
Query 534 GATTCTTGAAGTTACAAGAAGAGTTCTTAGATCTTC-AGGTTTTATGTTTCGAGACGAAT 592
||||||| | ||||| |||||||||||||||||||| ||||| | |||||||| ||||
Sbjct 531 GATTCTTCATGTTACTAGAAGAGTTCTTAGATCTTCTGGGTTTGA-ATTTCGAGAGGAAT 589
Query 593 GGGCTAATGTTATCTCTGGATCTGATGAAGGTATATATTCTTGGATTACTGCCAATTACG 652
||||| ||||||||||||||||||||||||| ||||| ||||| || ||| || | |
Sbjct 590 GGGCTTCTGTTATCTCTGGATCTGATGAAGGTGTATATGCTTGGGTTGTTGCTAACCATG 649
Query 653 CACTTGGTTCGCTTGGAACTGATCCGTTGGAAACAACGGGGATTGTTGAACTAGGCGGTG 712
|||| |||||||||||| ||| || ||| ||||||| || ||||||||||| || || |
Sbjct 650 CACTCGGTTCGCTTGGAGGTGAACCTTTGAAAACAACTGGAATTGTTGAACTCGGTGGGG 709
Query 713 CTTCTGCGCAGGTGACATTTGTGTCAAGTGAGCATGTGCCTCCTGAGTACTCGCGTACGA 772
||||| | |||||||||||||| |||||||||| ||||||| |||||| ||||||| ||
Sbjct 710 CTTCTACCCAGGTGACATTTGTATCAAGTGAGCTTGTGCCTTCTGAGTTCTCGCGTTCG- 768
Query 773 TT-GCCTACGGAAATATTTCATACACA-ATCTACAGTCACAGCTTCCTCGATTATGGGA- 829
|| | ||| |||||| | ||||||| | |||||||||||||||||||||||| | |||
Sbjct 769 TTAGACTATGGAAATGTCTCATACA-ATCTCTACAGTCACAGCTTCCTCGATT-TTGGAC 826
Query 830 AGGATGCAGCACTAA-AAAAGTTATTGGAAAAACTCCAAAACT---CAGCT---AACTCT 882
|||||| ||||| || ||||||||| |||| || || |||| ||||| ||||||
Sbjct 827 AGGATGTAGCAC-AAGAAAAGTTATCGGAATTCCTACACAACTCAGCAGCTGCAAACTCT 885
Query 883 ACAGTGGATGGAGTAGTTGAAGACCCTTGTACTCCTAAAGGGTACAT-C-TACGACACAA 940
|||| ||| ||| ||||| |||||||||||||| |||||||| || | || | ||||
Sbjct 886 ACAGGGGAAGGAATAGTTCCTGACCCTTGTACTCCAAAAGGGTATATCCTTA--AAACAA 943
Query 941 A-TT-CAAAGAATTA-TTCATCC-GGATTCTTAGCTGATGAAA-GCAAACTTAAAGGCTC 995
| || |||| || | || | || |||||||| |||||| ||| | ||| ||| || | |
Sbjct 944 ATTTACAAA-AA-GACTT-A-CCTGGATTCTTGGCTGAT-AAAGGAAAATTTATAGCCAC 998
Query 996 CCTTCAAGCTGCTGGTAATTTCTCAAAATGCCGATCCGCTACGTTTGCGC-TTTTGAAAG 1054
||||||||||||||||||||||||| | || ||||| ||| | ||||| | | ||| | |
Sbjct 999 CCTTCAAGCTGCTGGTAATTTCTCAGAGTGTCGATCTGCTGCATTTGC-CATGTTGCAGG 1057
Query 1055 AAGGAAAAGAGAACTGT-CTATATGAGCATTGTTCTATTGGATCAACATTCACACCTGAT 1113
||||||||| ||| ||| || ||| ||||||||||||||||||||| |||||||||| ||
Sbjct 1058 AAGGAAAAGGGAAATGTACT-TATAAGCATTGTTCTATTGGATCAATATTCACACCTAAT 1116
Query 1114 CTTCAAGGAAGTTTTTTGGCTACAGCA-TCTTTCTACTACACCGCCAAGTTCTTTGAGTT 1172
||||||||||||||||||||||| | | ||||| | ||||| |||||||||||| |||
Sbjct 1117 CTTCAAGGAAGTTTTTTGGCTAC-GGAGAATTTCTTCCACACCTCCAAGTTCTTTGGGTT 1175
Query 1173 GGAAGAAAAGGGTTGGTTGTCTGAATTGATTCCAGCTGGGAAGAGATAT-TGTGGAGAAG 1231
|| |||||| | |||| |||||||| ||||| || || || |||| | ||||||||||
Sbjct 1176 GGGAGAAAAAGATTGGCTGTCTGAAATGATTTTGGCCGGAAATAGAT-TCTGTGGAGAAG 1234
Query 1232 AATGGTCGAAACTGATATTGGAATACCCAACAACTGATGAAGA-ATATTTGCGT-GGCTA 1289
| ||||||||| ||| | || |||| |||||| | | || || | |||||| | || ||
Sbjct 1235 ATTGGTCGAAATTGAAAGTGAAATATCCAACATTTAAGGACGAGA-ATTTGCTTCGG-TA 1292
Query 1290 TTGTTTCTCAGCAGCATATACTATATCAATGCTTCATGATAGTCTTGGTATTGCTCTTGA 1349
|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1293 TTGTTTCTCATCAGCATATATTATATCAATGCTTCATGATAGTCTTGGTGTTGCTCTTGA 1352
Query 1350 TGATGAAAGTATCACGTATGCAAGTAAAGCAGGAGAAAAAC-ACATACCACTAGATTGGG 1408
||| ||||| |||| ||||||||||||||| ||||| | | ||||||||||||||||||
Sbjct 1353 TGACGAAAGAATCAAGTATGCAAGTAAAGCCGGAGACGA-CGACATACCACTAGATTGGG 1411
Query 1409 CATTGGGGGCTTTTATACT-AGATGTTGTAACACCCAATTCTGATTACAATGGTAAATCT 1467
||||||| |||||||| || | || || ||| ||| || |||||||| |||||||| |
Sbjct 1412 CATTGGGTGCTTTTATCCTTA-ATACTGCCACAGCCACTTTTGATTACAGTGGTAAATAT 1470
Query 1468 AGAAAATAT-CTTGGCTTTTAAGTAACGTAGCCAAATACAAAATATGA 1514
|||||| || |||| ||| | |||| |||||||||||||||| ||||
Sbjct 1471 AGAAAA-ATTCTTGACTTG-A-GTAATGTAGCCAAATACAAAACATGA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5