BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14260.1
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471592 jgi|Araly1|471592|fgenesh2_kg.1__1546__AT1G14260.1 1332 0.0
> Ahg471592 jgi|Araly1|471592|fgenesh2_kg.1__1546__AT1G14260.1
Length=1254
Score = 1332 bits (721), Expect = 0.0
Identities = 904/987 (92%), Gaps = 33/987 (3%)
Strand=Plus/Plus
Query 373 GAGTGTCGGATTTGTCAGGATGAATGTGATATTAAGAATCTTGAGAGTCCTTGTGCTTGC 432
|||||||| |||||||| || ||||||||||||||||||||||||||||| ||| |||||
Sbjct 299 GAGTGTCGTATTTGTCAAGAGGAATGTGATATTAAGAATCTTGAGAGTCCATGTTCTTGC 358
Query 433 AATGGCAGCTTAAAGTATGCTCACAGAAAATGTGTTCAACGTTGGTGTAATGAAAAGGGA 492
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 AATGGCAGCTTAAAGTATGCTCACAGAAAATGTGTTCAACGTTGGTGCAATGAAAAGGGA 418
Query 493 AACACTATATGCGAAATCTGTCATCAGCCATACCAAGCTGGATATACCTCTCCACCACCA 552
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 419 AACACTACATGCGAAATCTGTCATCAGCCATACCAAGCTGGATATACCTCACCACCACCT 478
Query 553 CCACCACAATCTGAAGAAACTACTATTGACATTGGTGGAGGATGGAGAATCTCGGGTTTG 612
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 CCACCCCAATCAGAAGAAACTACTATTGACATTGGTGGAGGATGGAGAATCTCAGGTTTG 538
Query 613 GATTTAGATGATCCACGTCTCTTGGCAATAGCAGAAGCTGAACGTCAGATTTTAGAATCA 672
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 GATTTAGATGATCCACGTCTCTTGGCAATAGCAGAAGCCGAACGTCAGATTTTAGAATCG 598
Query 673 GAATATGATGATTATACAGCTTCAGATACCAGTGGAGCTGCATTTTTCCGCTCTGCTGCT 732
|| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 599 GAGTATGATGATTATACAGCTTCAGATACCAATGGAGCTGCATTTTTCCGCTCAGCTGCT 658
Query 733 TTAATATTGATGACTCTTCTTCTATTGCGACATGCACTGACTATACCAGATTATTCAGAT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 CTAATATTGATGACTCTTCTTCTATTGCGACATGCACTGACTATACCAGATTATGCAGAT 718
Query 793 AGTGAAGATGATGATCCTTCTTCAATACTTTCTCTTTTCTTACTCCGAGCTGCCAGTTTT 852
||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTG-A-A-GATGACCCTTCTTCAATACTTTCTCTTTTCTTACTCCGAGCTGCCAGTTTT 775
Query 853 CTTCTTCCTTGCTACATCATGGCATCAGCCATCAGTATCCTGCATCGCCGTAGACAGAGA 912
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 776 CTTCTTCCTTGCTACATCATGGCATCAGCCATCAGTATCCTGCATCGCCGTAGACAAAGA 835
Query 913 CAGGAAGCAGCGGACTTGGCCACTCGGTTTGCGTTGGTGCTCAGCTCGCGCCAACCTAGA 972
||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 836 CAGGAAGCAGCGGCCTTAGCCACTCGGTTTGCGTTGGTGCTCAGCTCGCGGCAACCCAGA 895
Query 973 CCCGTGATTAATTATTTGTCAATGGAGCCATGATTTTATAGTTCCACTCTAAGAGTTTCA 1032
|||||||||||||||||||||||||||| |||||| | | | | | | |
Sbjct 896 GCCGTGATTAATTATTTGTCAATGGAGCCGTGATTT-A-A-T---A------G--T---A 938
Query 1033 GGTGTATATGCTTTTCAAAT-ATTTCATCAGAAAAAAGATTCATGAACTGCTGTTAAAAG 1091
| || ||||||||| | |||||||||| ||| ||||||||||||||||||| |||
Sbjct 939 --T--AT--GCTTTTCAA-TGATTTCATCAGCAAAT-GATTCATGAACTGCTGTTATAAG 990
Query 1092 AGTGGTTTACAATTTGGTAGCAACAAGAACCATCACAAGATCTACATGATGGTCCTTCTG 1151
|||||||| ||||||| || ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 991 AGTGGTTTGCAATTTGATATCAACAAGGACCATCAAAAGATCTACATGATGGTCCTTCTG 1050
Query 1152 AATCAGCTTTCTTACAAACAAGGAGTGTCCTAACTTAGTGCAGAGtttttttttttACAA 1211
|||| ||||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct 1051 AATCGGCTTTCTTACAAACAAGGAATGTCCTAACTTAGTGCAGAGTTTTTTCTTATA-A- 1108
Query 1212 GTATTCGATTCTAAGAAAGATTGTGTATGTAGATTAAAGAGTTTCTGATTCTGTAGCATT 1271
||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||
Sbjct 1109 GTATTCGATTCTAAGAAAGTTTGTGTATGTAGATTAAA-AGTTTCTGATTCTGTGGCATT 1167
Query 1272 AAGATTTTCAATAACACTTGATTGAGAGATGAGCATTTCACTTTTT-AGGTAAAGAAAAA 1330
||| |||||||||||||| | ||| ||||||||||||||||||||| | | ||| |||||
Sbjct 1168 AAGTTTTTCAATAACACTCGTTTGGGAGATGAGCATTTCACTTTTTTAAGAAAAAAAAAA 1227
Query 1331 CGAGACACATAATTTGTAATCTGTGTA 1357
||||||||||||||||||| |||||||
Sbjct 1228 CGAGACACATAATTTGTAACCTGTGTA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51580306701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5