BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14270.1
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471595 jgi|Araly1|471595|fgenesh2_kg.1__1549__AT1G14270.1 1914 0.0
> Ahg471595 jgi|Araly1|471595|fgenesh2_kg.1__1549__AT1G14270.1
Length=1289
Score = 1914 bits (1036), Expect = 0.0
Identities = 1195/1270 (94%), Gaps = 18/1270 (1%)
Strand=Plus/Plus
Query 55 TGTGTGGAAGTTCTCTAAGAACAACAGAAAATTTCAAAATGGTTTCTCAGATAATCTCGT 114
||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||
Sbjct 30 TGTGTGGAAGTTCTCTAAGAAGAACAGAAAAATTCAAAATGGTTTCGCAGATAATTTCGT 89
Query 115 GTTTATCTCAATCTTCGTCTC-TTCTATGTTTATCCGATTCAAGGAGGTTAATTCTT-CC 172
||||||| |||||| |||||| || ||||||| |||| | |||| ||||| || ||
Sbjct 90 GTTTATCACAATCTCCGTCTCGTT-TATGTTTCTCCG-----A-GAGGCTAATT-TTGCC 141
Query 173 GAAGACTTGT-ACTTACGGCGGTTTGAGCCGGTTTTCTCCAGGATTTGCTAGCCGCCGGT 231
||| |||| | || | ||||||| |||||||||||||| ||||||| || ||||||||
Sbjct 142 GAATACTTATAAC-CGCAGCGGTTTAAGCCGGTTTTCTCCGGGATTTGGTAACCGCCGGT 200
Query 232 TATTTACGGTTAATCGGAAGAAATGGAGATCGGCCTGCATTTTCAACTCTGGAAAGGAAC 291
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 201 TATTTACGGTTAACCGGAAGAAATGGAGATCGGCGTGCATTTTCAACTCTGGGAAGGAAC 260
Query 292 CTGGAGGAGAGGGAAAGTTACAAGGAGGTAGCTCAGAGTGGCCGATACTTCAGAGATGGG 351
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 261 CTGGAGGAGAGGGAAAGTTACAAGGAAGTAGCTCAGAGTGGCCGATACTTCAGAGATGGG 320
Query 352 AAGTTCCATGGGGATGGCAGACAGTTTCGTTAACTTCGTTTGCTTGTGCACTAAGTTTTG 411
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 321 AAGTTCCATGGGGATGGCAGACAGTTTCGTTAACTTCGTTTGCTTGTGCATTAAGTTTTG 380
Query 412 TTTTGACAGGATTAACCGAGATGGCAGTCATACCGTTTTTAGGAATCGACGTTGAGAAAC 471
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 381 TTTTGACAGGATTAACCGAGATGGCGGTCATACCGTTTTTAGGAATTGACGTTGAGAAAC 440
Query 472 TGACCTTGGACGATAAGGCGGAGATTTTGTTCCTGGATCAAGGCCTAACAACCGCGGTGG 531
||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 441 TGAGCTTGGACGATAAGGCAGAAATTTTGTTCCTGGATCAAGGCCTAACAACTGCGGTGG 500
Query 532 TACTTGCTGTCATATTCACTGTTGCCAAAACCTTCGACCCACTTCCTGAAGATATTCTTC 591
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 501 TACTTGCTGTCATATTCACTGTTGCCAAAACCTTCGACCCTCTTCCTGAAGATATTCTTC 560
Query 592 GCTATGATTTGAGACAACCCGTCAACCTGCAAAAAGGATGGCTTGTGTGGGGTGGAATCG 651
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 561 GCTATGATTTGAGACAACCCTTCAACCTGCAAAAAGGATGGCTCGTGTGGGGTGGAATCG 620
Query 652 GTCTGGTTGGTGCTGTTGGTGCTATTGCGTTAACAGGTGTTGTTTTATCCGTGTTCAGGA 711
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 621 GTCTGGTTGGTGCTGTTGGTGCTATTGCATTAACAGGTGTTGTTTTATCCGTGTTCAGGA 680
Query 712 CAGAAGCACCTGAAAGGGAGGTAGACTCTTTGATGAAGCTTCTTCCATTAATTGGATCCT 771
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 681 CAGAGGCACCCGAAAGGGAGGTAGACTCTTTGATGAAGCTTCTCCCATTAATTGGATCCT 740
Query 772 CAAACATAAGCACCTTAAGCTTAGTGGGCATAACTGGAATCCTTGCTCCACTTCTGGAGG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CAAACATAAGCACCTTAAGCTTAGTGGGCATAACTGGAATCCTTGCTCCACTTCTGGAGG 800
Query 832 AGACCGTGTTTCGCGGATTCTTCATGGTCTCTCTTACCAAATGGGTCCCGACCCCAATAG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AGACCGTGTTTCGCGGATTCTTCATGGTCTCTCTTACCAAATGGGTCCCGACCCCAATAG 860
Query 892 CGATCATCATCAGCTCAGCTGCGTTTGCCCTTGCCCATTTCACACCTGGTGAATTCCCGC 951
|||||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||
Sbjct 861 CGATCATCATCAGCTCAGCTGCCTTTGCCCTTGCCCATCTCACGCCGGGTGAATTCCCGC 920
Query 952 AGCTGTTTATTCTAGGAAGTGTTTTGGGATTATCATATGCACAAACCCGCAATCTCATTA 1011
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 921 AGCTGTTTATTCTAGGAAGTGTTTTGGGATTATCGTATGCACAAACCCGCAATCTCATTA 980
Query 1012 CCCCAATGGTCATACACGGTTTCTGGAACTCGGGAGTTATTTTGCTACTCACTTTTCTTC 1071
|||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 981 CCCCGATGGTCATACATGGTTTTTGGAACTCAGGAGTTATTTTGCTACTCACTTTTCTTC 1040
Query 1072 AGATCCAAGGGTATGACATTAAGGAGCTATTGCAGGCAAACTAGCTCTGAGCCATGCTCT 1131
||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 1041 AGATCCAAGGGTATGACATTAAGGAACTATTGCAGGCAAACTAGCTCTGAGCTTTTCTCT 1100
Query 1132 TTGTGCTGTCCGCATTTAACATCAAAAAGCTTCATTATGTGCTCGATGT-TAGTAAGATA 1190
||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 1101 TTGTGCTGTCCGCATTTAACATCAAAAAGCTTCATTATGTGCTCGAT-TATGGTAAGATA 1159
Query 1191 TTTTGTATTCGAGAACAGATTTCATACTTAATGCAATTTGGGTTTTGGTAGAGTTATCTT 1250
||||||||||||||| | | ||||||||||||||||||||||||||||| || |||||||
Sbjct 1160 TTTTGTATTCGAGAAAATAATTCATACTTAATGCAATTTGGGTTTTGGTCGATTTATCTT 1219
Query 1251 TAT-T-A--CAACATCATGACAGTAATGTATGAACTAATATGGTAGAGATGAATCTTTTT 1306
||| | | ||||||| ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1220 TATGTGATACAACATCGTGACAGTAATGTATGTACTAAAATGGTAGAGATGAATCTTTTT 1279
Query 1307 GGAACAAAAA 1316
||||||||||
Sbjct 1280 GGAACAAAAA 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5