BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14290.1
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920317 jgi|Araly1|920317|scaffold_101598.1 1685 0.0
> Ahg920317 jgi|Araly1|920317|scaffold_101598.1
Length=1039
Score = 1685 bits (912), Expect = 0.0
Identities = 1000/1042 (96%), Gaps = 7/1042 (1%)
Strand=Plus/Plus
Query 163 GATTGATTAGAATT--AGAGATGATGAGTTTCGTGATTTCAGATGAATTTCTGGGGACAT 220
|||| |||||| || ||| |||||| |||||| |||||| |||||||||||||||||||
Sbjct 1 GATTAATTAGACTTAAAGAAATGATGGGTTTCGCGATTTCCGATGAATTTCTGGGGACAT 60
Query 221 TTGTGCCGATTCTGGTGTATTGGGTGTATTCAGGGATGTACATTTGCTTAGGATCTTTGG 280
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGTGCCGATTCTGGTGTATTGGGTGTATTCAGGGATGTACATTTGCTTAGGATCTTTGG 120
Query 281 ATAAATATAGATTGCATTCGAAGATAGATGAGGATGAGAAGAATCTCGTTTCTAAATCTG 340
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 121 ATAAATATAGATTGCATTCGAAGATAGATGAGGATGAGAAGAATCTCGTTACCAAATCTG 180
Query 341 CCGTCGTTAAGGGCGTTCTTCTTCAACAGACTCTTCAGGCTATTATCTCCGTTATTCTCT 400
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGTCGTCAAGGGCGTTCTTCTTCAACAGACTCTTCAGGCTATTATCTCCGTTATTCTCT 240
Query 401 TCAAGATAACAGGAAGTGATGCAGATGCTGCTACGACACAGCAATTTTCCATTCTACTTC 460
|||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 241 TCAAGATAACAGGAAGTGATGCAGATGCTGTTACCACGCAGCAATTTTCCATTCTACTTC 300
Query 461 TGGCTAGGCAGTTTATCATCGCTATGCTTGTAATTGACACTTGGCAATATTTCATTCATC 520
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 TGGCTAGGCAATTTATCATCGCTATGCTTGTAATTGACACTTGGCAATACTTCATTCATC 360
Query 521 GATATATGCACCTCAACAAGTTCTTATACAAGCACATCCACTCTCAGCATCATCGCCTTA 580
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 361 GATATATGCACCTCAACAAGTTCTTGTACAAGCACATCCACTCTCAACATCATCGCCTTG 420
Query 581 TTGTGCCTTATTCGTATGGAGCTCTATACAACCATCCACTAGAAGGTCTTCTCTTGGACA 640
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGTGCCTTATTCGTATGGAGCTCTATACAACCATCCACTAGAAGGTCTTCTCTTGGACA 480
Query 641 CTATTGGTGGTGCTTTGTCTTTCCTCTTCTCTGGTATGTCCCCAAGAACAGCCATCTTTT 700
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 CTATAGGTGGTGCTTTGTCTTTCCTCTTCTCTGGTATGTCCCCAAGAACCGCCATCTTTT 540
Query 701 TCTTCTCCTTCGCTACCATCAAAACAGTAGATGATCATTGTGGACTATGGCTTCCGGGAA 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTTCTCCTTCGCTACCATCAAAACAGTAGATGATCATTGTGGACTATGGCTTCCGGGAA 600
Query 761 ATCCATTTCACATCTTCTTCAGTAATAACTCTGCTTACCATGATGTTCACCACCAACTCT 820
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 ATCCATTTCACATCTTCTTCAGTAATAATTCTGCTTACCATGATGTTCACCACCAACTCT 660
Query 821 ATGGAACCAAATACAACTTCTCGCAGCCATTCTTTGTTATGTGGGATAGGATTCTCGGCA 880
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 661 ATGGAACCAAATACAACTTCTCGCAGCCATTCTTTATTATGTGGGATAGGATCCTCGGTA 720
Query 881 CTTACTTGCCTTATTCA-TTGGAGAAAAGAGCCAATGGAGGATTTGAAACACGGCCAATC 939
||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 721 CTTACTTGCCTTATTCACTTG-AGAAAAGGGCCAATGGAGGATTTGAAACACGGCCAATC 779
Query 940 AAAGTATCCAAAGATGAGTAATTTCTCTTTCTTTCTTTTGGGG-CTTCTTGTCAATGCTA 998
|||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||
Sbjct 780 AAAGTATCCAAAGATGAGTAATTTGTCTTTCTTTCTTTTGGGGGCTTCTTGTCACTGCTA 839
Query 999 AGTCATCATTTTGCTCGTTAGAGAACCACTGTAACCTTTGCGTACTTGTAATTGTACATA 1058
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 AGTCATCATTT-GCTCGTTAGAGAACCACTGTAACCTTTGCGTACTTGTAACTGTACATA 898
Query 1059 CAATTCCAATCTATCCTTTTTTCGATCTGCGGGCATATGTTTCTGTGTAAGCCAGCAGTA 1118
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 899 CAATTCCAATCTATCCTTTTT-CGATCTGCGGGCAGATGTTTCTGTGTAAGCCAGCAGTA 957
Query 1119 AATTTATCTTGTAATAGCCAAAACTTCAGATCTTCTCTGTTATTATTATCTGCTTTATAA 1178
|||| || ||||||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 958 AATTCATTTTGTAATAGTCAAAACTTCTGATCTTCTCTGTTGTTATTATCTGCTTTATAA 1017
Query 1179 TTCCAGGTTTTGAGACCTGTGA 1200
||||||||||||||||||||||
Sbjct 1018 TTCCAGGTTTTGAGACCTGTGA 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45404394147
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5