BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14300.2
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920318 jgi|Araly1|920318|scaffold_101599.1 1413 0.0
> Ahg920318 jgi|Araly1|920318|scaffold_101599.1
Length=1063
Score = 1413 bits (765), Expect = 0.0
Identities = 831/864 (96%), Gaps = 0/864 (0%)
Strand=Plus/Plus
Query 89 AATTCTTCCTCGGAGATATGGTGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTC 148
|||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 7 AATTATTCCTCGGAGATATGGCGACGGAGCTGGAAGAGCTTGTAGAATTTTTGTCATCTC 66
Query 149 CTTCACCGCCTGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGG 208
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 67 CTTCACCGCCTGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGATTAACTGGTTCCGAGG 126
Query 209 AAGGTTTACAATCTCTATCAAAGTATTCCGAGATTCTTCTTCCATCATTGTCTCAGCTTC 268
||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct 127 AAGGTTTACAATCTCTATCCAAGTATTCCGAGATTCTTCTTCCATCACTGTCTCGGCTTC 186
Query 269 TAAATGAAAGCAAGGAGGTATCAGAGCCAGCAGCTCAAGCTCTTGTTAATCTTTCTCAGA 328
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 187 TAAATGAAAGCAAGGAGGTATCAGAGCCAGCAGCTCAAGCTCTTGTAAATCTTTCTCAGA 246
Query 329 AGTGTGAATTGGCAAAGAAGATGATTCAAATGGGTTTGATTAAAGTGGCCATGGACATGT 388
| | ||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 247 ACTCTGAATTGGCTAGGAAGATGATTCAAATGGGTTTGATCAAAGTGGCTATGGACATGT 306
Query 389 TGTATAAGCCAGAGTCTTGTATTACCAGATTACTTGTTATGCTTCTAGTGAATCTTACTC 448
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 307 TGTATAAGCCAGAGTCTTGTATTACCAGATTGCTTGTTATGCTTCTTGTTAATCTTACTC 366
Query 449 AGTTGGATGATGGGGTTTCTTCTTTGCTTCAGATTGACGATGAGAAGATGCATGGACTAC 508
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 367 AGTTGGATGATGGGGTTTCTTCTTTGCTTCAGATTGATGATGAGAAGATGCATGGACTAC 426
Query 509 ATATCATGAAGCTTGTTAGGTCATTTTGCAGGTCTTCTGGTGAAACTGCTGATGATCAGT 568
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 427 ATATCATGAAGCTTGTTAGGTCATTTTGCAGGTCTTCTGGTGAAACTACTGATGATCAGT 486
Query 569 TTGAGCATGTTGGTTCGATCCTTGTCAACATATCAAAAACAGAAGATGGGAGGAAATTGT 628
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 487 TTGAGCATGTTGGCTCAATCCTTGTCAACATATCAAAAACAGAAGATGGGAGGAAATTAT 546
Query 629 TACTGGAGCCAAAGAGACGACTATTAAAACAGATCATTAGGCAGTTTGATTCAACAAATC 688
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 547 TACTGGAGCCAAAGAGAGGACTACTAAAACAGATTATTAGGCAGTTTGATTCAACAAATC 606
Query 689 AATTGCGAAAGAAAGGGGTTGCTGGGACTATTCGTAACTGTTGTTTTGAAGCCAAAAACC 748
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 607 AATTGCGAAAGAAAGGGGTTGCTGGGACTATTCGTAACTGCTGTTTTGAAGCCAAAAACC 666
Query 749 AACTCCAGAATATACTCTTGATATCAGAGTTTCTTTGGCCCGCTCTGCTCCTACCAGTTG 808
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 667 AACTCCAGAATATACTCTTGATATCAGAGTTTCTCTGGCCTGCTCTGCTTCTACCAGTTG 726
Query 809 CAGGCAGCAAGACATACAGTGAGCAAGATGTCGCAAAAATGCCACCTGAGCTTGGAAGTG 868
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 727 CAGGCAGCAAGACATACAGTGAGCAAGATATCGCAAAAATGCCACCTGAGCTAGGAAGTG 786
Query 869 CACTGTCCATTGAGCGAGAACCAGTTACTGATCCTGACATTCGCGTTCAGACACTCGAAG 928
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 787 CACTTTCCATTGAGCGAGAACCAGTTACTGATCCTGACATTCGTGTTCAGACACTCGAAG 846
Query 929 CTATATATTTGATCATCTTAGAGG 952
||||||||||||||||||||||||
Sbjct 847 CTATATATTTGATCATCTTAGAGG 870
Score = 302 bits (163), Expect = 6e-81
Identities = 183/193 (95%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 1064 AGGAGGCAGGTCGAAGGGCATTTTGGTCAGTCAACGGCCCACGGATTCTACAATTGGGAT 1123
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 868 AGGAGGCAGGTCGAAGGGCATTTTGGTCAGTCAACGGGCCAAGGATTCTACAAGTGGGAT 927
Query 1124 ACGAATATGAAGAAGATCCGAAAGCAATGAGAGCCTATGAGCAAGTCGGTTCTTTGCTTG 1183
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 928 ACGAATATGAGGAAGATCCAAAAGCAATGAGAGCCTATGAGCAAGTCGGTTCTTTGCTTG 987
Query 1184 TTGAGGAAGCTGGAGGTCCGGAAGAGTCGTTGGAGCCAACAAAAGCAGAGTCTTGAAGTT 1243
|||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 988 TTGAAGAAGCTGGAGGCCCGGAAGAATCGTTGGAGCCGACAAAAGCAGAGTCTTGAAGTA 1047
Query 1244 CATTATTTGTTGT 1256
|||||||||||||
Sbjct 1048 CATTATTTGTTGT 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5