BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14310.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312429 jgi|Araly1|312429|fgenesh1_pm.C_scaffold_1001209 1253 0.0
> Ahg312429 jgi|Araly1|312429|fgenesh1_pm.C_scaffold_1001209
Length=765
Score = 1253 bits (678), Expect = 0.0
Identities = 737/766 (96%), Gaps = 2/766 (0%)
Strand=Plus/Plus
Query 6 ATGGAAGCTTGTTTGAGATGTTCACGAGGAAGCTATCTAATTGAAGCCATGAGACCACTC 65
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGAAGCTTGTTTGAGATGTTCACGAGGAAGCTATCTAATTGAAGCCTTGAGACCACTC 60
Query 66 TCCAGCTCTCTCCGGCCTTCTTCTTCTGTCTCTTTTAGCACCGGCAAGCCAATCAAGAGA 125
||||||||||||||| ||||||||||||||||||| |||||||||||||| || |||||
Sbjct 61 TCCAGCTCTCTCCGGTCTTCTTCTTCTGTCTCTTTCAGCACCGGCAAGCCGATAAAGAGG 120
Query 126 GCTTATGATGGATTGTTGCTTGATGCTGGAGGAACTCTTTTGCAATTGTCGAAACCTGTT 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTATGATGGATTGTTGCTTGATGCTGGAGGAACTCTTTTGCAATTGTCGAAACCTGTT 180
Query 186 CATGAAACCTACGCTTCCTTGGGCCAAAAATATGGTCTCAAGACAACTCCAGCTGAGATC 245
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CATGAAACCTACGCTTCCTTGGGCCAGAAATATGGTCTCAAGACAACTCCAGCTGAGATC 240
Query 246 AAGGAAGGTTTCAAGAGAGTTTTTTCTGCCCCTTGGCCTGAGAAGTTACGTTACCAGGGA 305
||| ||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 241 AAGCAAGGTTTCAAGAGAGCTTTTTCTGCTCCTTGGCCTGACAAGTTGCGTTACCAGGGA 300
Query 306 GATGGAAGACCATTCTGGAAGCTTGTTGTTTCGGAAGCTACTGGTTGTTCTGATAATGAC 365
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GATGGAAGACCGTTTTGGAAGCTCGTTGTTTCGGAAGCTACTGGTTGTTCTGATAATGAC 360
Query 366 TACTTCGAAGACGTCTACCAATATTAT-GCGAATGGCGAGGCATGGCATCTCCCAGAAGG 424
||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 361 TACTTCGAAGAAGTCTACCAATATT-TCGCGAATGGCGAGGCGTGGCATCTCCCAGAAGG 419
Query 425 AGCTTATGAGACAATGTCACTACTGAAAGATGCTGGAGTTAAGATGGCTGTTGTGTCTAA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCTTATGAGACAATGTCACTACTGAAAGATGCTGGAGTTAAGATGGCTGTTGTGTCTAA 479
Query 485 TTTCGATACCAGGCTAAGAAAGCTATTGAAGGATCTTAATGTCATAGATATGTTCGATGC 544
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TTTCGATACCCGGCTAAGAAAGCTATTGAAGGATCTTAATGTCATAGATATGTTTGATGC 539
Query 545 TGTGATTGTATCCGCAGAAGTCGGATACGAGAAGCCTGATGAACGAATCTTCAAATCTGC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTGATTGTATCCGCAGAAGTCGGATACGAGAAGCCTGATGAACGAATCTTCAAATCTGC 599
Query 605 GTTAGAACAAATCAGCGTAGATGTAAACAGAGCAGTGCATGTCGGAGATGATGAAGGAGC 664
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 600 ATTAGAACAAATCAGCGTAGAAGTAAACAGAGCTGTGCATGTCGGAGATGATGAAGGAGC 659
Query 665 TGATAAAGGCGGAGCAAACGCCATCGGTATTGCTTGTTGGTTGTGGGGAGAAGATGTGCA 724
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 660 AGATAAAGGCGGAGCAAACGCCATGGGTATTGCTTGTTGGTTGTGGGGAAAAGATGTGCA 719
Query 725 GACATTTTCGGACATACAAAAGCGGATCTTGGTTTCAGAACTCTAA 770
||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 720 GACATTTTCAGACATACAAGAGCGGATCTTGGTTTCAGAACTCTAA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5