BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14320.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920320 jgi|Araly1|920320|scaffold_101601.1 1243 0.0
Ahg921543 jgi|Araly1|921543|scaffold_102824.1 789 0.0
Ahg476107 jgi|Araly1|476107|fgenesh2_kg.2__1237__AT1G66580.1 713 0.0
> Ahg920320 jgi|Araly1|920320|scaffold_101601.1
Length=736
Score = 1243 bits (673), Expect = 0.0
Identities = 711/730 (97%), Gaps = 0/730 (0%)
Strand=Plus/Plus
Query 9 CGTCGAGCAGCCGCGCTTTTTGGCCGAGGAAGGATAAAGAGAGACGCCATGGGAAGAAGA 68
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1 CGTCGAGCAGCCGCGCTTTTTGGCTGAGGAAGGAAAAAGAGAGACGCCATGGGAAGAAGA 60
Query 69 CCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAAAGTCTCGCTACTGTCGT 128
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 61 CCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAAAATCTCGATACTGTCGT 120
Query 129 GGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGTATGAAGAGGAAGGGTGTTGAT 188
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 121 GGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGAATGAAGAGGAAAGGTGTTGAT 180
Query 189 GAGTTTCCATTCTGTGTCCATTTGGTGTCATGGGAGAAGGAGAATGTGTCAAGTGAAGCA 248
|| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 GAATTCCCATTCTGTGTCCATTTGGTATCATGGGAGAAGGAGAATGTGTCCAGTGAAGCA 240
Query 249 CTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGTGAAGTCTGCTGGAAAAGATGCT 308
||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 241 CTTGAAGCTGCACGTATTGCTTGCAACAAGTACATGGTGAAATCTGCAGGGAAAGATGCT 300
Query 309 TTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAACAAGATGCTTTCG 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAACAAGATGCTTTCC 360
Query 369 TGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTGGTAAAGCTTTGGGT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTGGTAAAGCTTTGGGT 420
Query 429 ACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGTTGCAAGGATGCCCAT 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 ACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGTTGCAAGGATGCTCAT 480
Query 489 GGTCACCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAG 548
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTCACCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAG 540
Query 549 ATTATTGTCAGCAGGAAATGGGGCTTCACGAAGTTTAACAGAGCTGACTTCACCAAGTTG 608
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTATTGTCAGCAGGAAATGGGGTTTCACGAAGTTTAACAGAGCTGACTTCACCAAGTTG 600
Query 609 AGGCAAGAGAAGCGTGTTGTCCCTGATGGTGTCAACGCTAAGTTCCTCTCATGCCATGGA 668
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGGCAAGAGAAGCGTGTTGTTCCTGATGGTGTCAACGCTAAGTTCCTCTCATGCCATGGA 660
Query 669 CCTTTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCCAGCCCACTACTGAAGAGTATCA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTTTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCCAGCCCACTACTGAAGAGTATCA 720
Query 729 GAACTGAAGT 738
||||||||||
Sbjct 721 GAACTGAAGT 730
> Ahg921543 jgi|Araly1|921543|scaffold_102824.1
Length=707
Score = 789 bits (427), Expect = 0.0
Identities = 586/663 (88%), Gaps = 10/663 (2%)
Strand=Plus/Plus
Query 52 ACGCCATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAA 111
|||| ||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 17 ACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCAA 76
Query 112 AGTCTCGCTACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGTATGA 171
| || | |||||||||||||| || |||||||| |||||||| ||||||||||||||||
Sbjct 77 AATCAAGATACTGTCGTGGTGTTCCCGATCCAAAGATCAGGATTTACGATGTTGGTATGA 136
Query 172 AGAGGAAGGGTGTTGATGAGTTTCCATT-CTGTGTCCATTTGGTGTCATGGGAGAAGGAG 230
||||||| || ||||||||| |||| || |||||| ||||| || ||||||||||| |||
Sbjct 137 AGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAAAGAG 195
Query 231 AATGTGTCAAGTGAAGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGTGAAG 290
||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 196 AATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAAA 255
Query 291 TCTGCTGGAAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGG 350
||||| || ||||||||||| ||| | | ||||| |||||||||||||||||||| |||
Sbjct 256 TCTGCGGGGAAAGATGCTTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTAGG 315
Query 351 ATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCT 410
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 316 ATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTGCT 375
Query 411 TTTGGTAAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGT 469
|||||||||||| |||| |||||||||| | |||||||| ||||||||||||||||||||
Sbjct 376 TTTGGTAAAGCTCTTGG-TACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTCTGT 434
Query 470 TCGTTGCAAGGATGCCCATGGTCACCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAA 529
| ||||| ||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct 435 GAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTAA 494
Query 530 GTTCCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGCTTCACGAAGTTTAACAG 589
||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| |
Sbjct 495 GTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAACCG 554
Query 590 AGCTGACTT-CACCAAGTTGAGGCAAGAGAAGCGTG-TTGTCCCTGATGGTGTCAACGCT 647
||||| || ||| ||| | |||||||||||||| | ||||||||||||||||||||||
Sbjct 555 TGCTGA-TTACACAAAGCTAAGGCAAGAGAAGCG-GATTGTCCCTGATGGTGTCAACGCC 612
Query 648 AAGTTCCTCTCATGCCATGGACCT-TTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCC 706
|||||||| || |||||||| | | ||||||||||||||||| |||||||| || ||| |
Sbjct 613 AAGTTCCTATCTTGCCATGGTC-TGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTC 671
Query 707 AGC 709
|||
Sbjct 672 AGC 674
> Ahg476107 jgi|Araly1|476107|fgenesh2_kg.2__1237__AT1G66580.1
Length=825
Score = 713 bits (386), Expect = 0.0
Identities = 563/649 (87%), Gaps = 10/649 (2%)
Strand=Plus/Plus
Query 57 ATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCC-AAAGTC 115
|||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| ||| ||
Sbjct 46 ATGGGACGAAGACCAGCGAGGTGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAA-TC 104
Query 116 TCGCTACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGTATGAAGAG 175
|| ||||||||||| || |||||||||||||||||||| |||||||| |||||||||||
Sbjct 105 ACGATACTGTCGTGGAGTTCCAGATCCAAAAATCAGGATTTACGATGTCGGTATGAAGAG 164
Query 176 GAAGGGTGTTGATGAGTTTCCATTCTGTGTCCATTTGGTGTCATGGGAGAAGGAGAATGT 235
||| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 165 GAAAGGAGTTGATGAGTTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGT 224
Query 236 GTCAAGTGAAGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGTGAAGTCTGC 295
||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 225 TTCAAGTGAAGCTCTTGAAGCTGCACGTATTGCTTGTAACAAGTACATGGTTAAATCTGC 284
Query 296 TGGAAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT-CAGGATTA 354
||| |||||||| || ||| | |||||||||||||||| ||||||||| | | | || |
Sbjct 285 TGGTAAAGATGCGTTCCATCTCCGGATTAGGGTTCATCCGTTCCATGTTTTGC-GAATCA 343
Query 355 ACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTG 414
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 344 ACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTG 403
Query 415 GTAAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGT 473
|||||||| |||| |||||||||| | ||||| || ||||||||||||||||||||| |
Sbjct 404 GTAAAGCTCTTGG-TACTTGTGCTAGAGTTGCGATCGGACAGGTTCTTTTGTCTGTTAGG 462
Query 474 TGCAAGGATGCCCATGGTCACCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAAGTTC 533
|| |||||| ||||| |||||||| || ||||||||| | |||||||| ||||||
Sbjct 463 TGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTC 522
Query 534 CCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGCTTCACGAAGTTTAACAGAGCT 593
||||||||||||||||| ||||| |||||||||||||| ||||| || || ||| | |||
Sbjct 523 CCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAATTCAACCGTGCT 582
Query 594 GACTTCACCAAGTTGAG-GCAAGAGAAGCGTG-TTGTCCCTGATGGTGTCAACGCTAAGT 651
|| | ||| ||||| || || | |||| | | |||| |||||||||||||| |||||||
Sbjct 583 GAGTACACGAAGTTAAGAGCGAT-GAAGAG-GATTGTTCCTGATGGTGTCAATGCTAAGT 640
Query 652 TCCTCTCATGCCATGGACCTTTGGCTAACCGTCAGCCGGGAAGTGCCTT 700
| || ||| |||||| || |||||||||||||| || |||||||||||
Sbjct 641 TTCTATCAAACCATGGGCCATTGGCTAACCGTCAACCTGGAAGTGCCTT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5