BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14330.1
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471603 jgi|Araly1|471603|fgenesh2_kg.1__1557__AT1G14330.1 2337 0.0
Ahg484196 jgi|Araly1|484196|fgenesh2_kg.5__188__AT2G02870.1 878 0.0
> Ahg471603 jgi|Araly1|471603|fgenesh2_kg.1__1557__AT1G14330.1
Length=1998
Score = 2337 bits (1265), Expect = 0.0
Identities = 1564/1704 (92%), Gaps = 37/1704 (2%)
Strand=Plus/Plus
Query 414 TTTTTATCAATCGAGATTTGGATCATCTAATCGTCTTTTGATTTCTCAGAAtctctctc- 472
|||||||||||||| |||||||| ||||||||||||||| ||| | | || | ||||
Sbjct 324 TTTTTATCAATCGATATTTGGATGATCTAATCGTCTTTT-TTTTTTTGGGAT-T-TCTCA 380
Query 473 tctctTTTAGC-CATTTTGCATTTCGTGTTTGGTCTCGTCTCGATC-T-GATTTCTCTAA 529
|| | | | |||| |||||||||||| || |||||||| | |||||||||||
Sbjct 381 GAAATTCTCTCTC-TTTT--TTTTCGTGTTTGG--TC-TCTCGATCTTAGATTTCTCTAA 434
Query 530 CATCGG-AATCTGTACGGAGAAGATGGTGGAAGATCGGACATATTTGATGTCAAGGATTT 588
|||||| |||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 435 CATCGGAAATCTGTACGGAGAAGATGGTGGAAGATCGGACATATTTGATCTCGAGGGTTT 494
Query 589 TCTCAAGTTCTCGTCTTTCAGAATCAAAGTGGCCATACATGTATCCACAACCAGAAGATT 648
||||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||
Sbjct 495 TCTCAAGTTCTCGTCTTTCAGAATCTAAGTGGCCTTACATGTATCCAGTAGCAGAAGATT 554
Query 649 CCTCTGAATCTAATCTCATCAATGGCAAAAGAGCATTGGAGAATGATGTTGATGAGCTCA 708
|||||||| |||| |||| ||||||||||||| |||| | | |||||||||||||||| |
Sbjct 555 CCTCTGAAACTAAGCTCAGCAATGGCAAAAGATCATT-G-G-ATGATGTTGATGAGCTAA 611
Query 709 GACAGAGCAAGTCTCCCAGATTGATGGGATTTTCAATTCATGGGAATGAAGCCATTGAAG 768
||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 612 GACAGAGCAAGTCTCTCAGATTGATGGGATTTTCAATTCAAGGGAATGAAGCTATTGAAG 671
Query 769 AAGATGAACAAGAACAAGACCAATCTGATTCTAACAACAATGGTAATAGCGATGGCGATT 828
| | | ||||||||||||||||||||||||||||||| || | ||||| ||||
Sbjct 672 -A-A-G---AAGAACAAGACCAATCTGATTCTAACAACAA---TACT---GATGGTGATT 719
Query 829 CACTTATCAATGATATTGGCAGAGACAATTCTATAAGCTGTTTGATTCGTTGCTCGAGGT 888
|||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 720 CACTTATCAATGATATTGGCAGGGACAATTCGATAAGCTGTTTGATCCGTTGTTCGAGGT 779
Query 889 CTGGTTACGGTTCGATTGCTTCTTTAAACCGGAGTTTTCGGTCTTTGGTGAAGACCGGAG 948
||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 780 CTGATTACGGTTCCATTGCTTCTTTAAACCGGAGTTTTCGGTCTCTGGTGAAGACCGGAG 839
Query 949 AGATTTATAGACTCAGGAGGCAAAACCAGATTGTTGAACATTGGGTTTACTTCTCTTGTC 1008
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 840 AGATTTATAGACTCAGGAGGCAAAACCAGGTTGTTGAACATTGGGTTTACTTCTCTTGCC 899
Query 1009 AGCTTTTGGAATGGGTTGCTTTCAATCCTTTTGAAAGAAGATGGATGAATTTGCCTACAA 1068
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 AGCTCTTGGAATGGGTTGCTTTCAATCCTGTTGAAAGAAGATGGATGAATTTGCCTACAA 959
Query 1069 TGCCTTCAGGTGTTACATTCATGTGTGCCGATAAAGAATCTTTAGCTGTTGGTACGGATT 1128
|||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 960 TGCCTTCAGGTGGTACATTCATGTGTGCTGATAAAGAATCGCTCGCTGTTGGTACGGATT 1019
Query 1129 TGCTTGTGTTAGGCAAAGATGATTACTCTTCTCATGTTATATATAGATATAGTCTTTTGA 1188
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1020 TGCTTGTTTTAGGCAAAGATGATTACTCTTCTCATGTTATATACAGATACAGTCTTTTGA 1079
Query 1189 CTAACTCTTGGTCTTCCGGTATGAGGATGAATTCTCCGAGGTGTTTGTTTGGCTCAGCGA 1248
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTAACTCTTGGTCGTCCGGTATGAGGATGAATTCTCCGAGGTGTTTGTTTGGCTCAGCGA 1139
Query 1249 GTCTAGGAGAGATTGCGATCTTTGCTGGTGGTTTTGATTCTTTTGGCAAAATCAGTGATT 1308
|||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||||
Sbjct 1140 GTCTAGGAGAGATTGCGATCTTCGCTGGTGGTTTTGATTCTCTTCGCAATATCAGTGATT 1199
Query 1309 CCGCTGAGATGTATAACTCCGAGCTTCAGACTTGGACTACACTTCCGAAGATGAATAAAC 1368
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1200 CCGCTGAGATGTATAACTCTGAGCTTCAGACTTGGACTACACTTCCGAAGATGAACAAAC 1259
Query 1369 CAAGGAAGATGTGTTCAGGTGTTTTCATGGATGGGAAGTTCTATGTGATTGGAGGAATTG 1428
| |||| | ||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1260 CGAGGAGGTTGTGTTCGGGTGTTTTCATGGATGGGAAGTTTTATGTCATTGGAGGAATTG 1319
Query 1429 GTGGAAATGATTCGAAAGTGCTTACTTGTGGTGAGGAGTTTGATTTAGAGACGAAGAAAT 1488
| |||| ||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1320 GAGGAACTGACTCGAAAGTGCTTACTTGCGGTGAGGAGTTCGATTTAGAGACAAAGAAAT 1379
Query 1489 GGACTGAGATACCGGAAATGTCGCCTCCAAGGAGCCGGGAAATGCCGGCAGCAGCAGAGG 1548
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1380 GGACTGAGATCCCGGAAATGTCGCCTCCAAGGAGCCGGGAAATGCCAGCAGCAGCAGAGG 1439
Query 1549 CGCCGCCTCTTGTTGCGGTTGTGAATAA-CGAATTGTATGCTGCTGATCATGCTGATATG 1607
|||| ||||||||||||||||||||||| | | |||||||| || |||||||||||||||
Sbjct 1440 CGCCACCTCTTGTTGCGGTTGTGAATAATC-AGTTGTATGCCGCGGATCATGCTGATATG 1498
Query 1608 GAAGTGAGGAAGTATGATAAGGAGAGTAAGAAATGGTTTACTTTAGGGAGATTGCCCGAA 1667
||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 1499 GAAGTTAGGAAGTATGATAAAGAGAGTAAGAAATGGTTTACTTTAGGGCGATTGCCGGAA 1558
Query 1668 AGAGCTGACTCGGTTAACGGTTGGGGATTAGCGTTTAGAGCTTGCGGTGAGAGGTTGATT 1727
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1559 AGAGCTGGCTCGGTTAACGGTTGGGGATTAGCGTTTAGAGCTTGCGGTGAGCGGTTAATT 1618
Query 1728 GTGATTGGTGGTCCTAGGAGTTCAGGTGGAGGGTACATTGAACTGAATTCATGGATACCA 1787
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1619 GTGATTGGTGGTCCTAGAAGTTCAGGTGGAGGGTACATTGAGCTGAATTCCTGGATACCA 1678
Query 1788 TCTAGTGATCGAAGTCCGCCTCTATGGACATTGCTCGGTAGGAAACATTCATCGAATTTT 1847
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TCTAGTGATCGAAGTCCACCTCTATGGACATTGCTCGGTAGGAAACATTCATCGAATTTC 1738
Query 1848 GTTTACAATTGCGCGGTGATGGGTTGCTGATAAAAGGGTTTCAACAATAACTTTCAGATG 1907
|| |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1739 GTATACAATTGTGCGGTGATGGGTTGCTGATAAA-GGGTTTCAACAATAATTTTCAGATG 1797
Query 1908 ATTTTTATGATTCTCCTGCCGTTGGAGATGTCGAAAGTTGCAGTCttttttttCTTATTA 1967
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1798 ATTTTTAAGATTCTCCTGCCGTTGGAGATGTCGAAAGTTGCAGTCTTTTT---CTTATTT 1854
Query 1968 ATTTTGGTTATAAAA-GAAATTTATTTG-AATTCAATTGGATACAATCATCTTGGTGGTA 2025
||||| |||| |||| ||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1855 ATTTTTGTTACAAAAAGAAATTTATTTTCAATTCAATTGGATACGATCATCTTGGTGGTA 1914
Query 2026 TTGTTAGTTTCTTGGAAAGAACAGAAACAGGTCTTGTAATAAGTTTGGTGGAGAAAGTTC 2085
||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1915 TTGTTAGATTCTTGGAAAGAACAGAAACTGGTTTTGTAATAAGTTTGGTGGAGAAAGTTC 1974
Query 2086 AGAATCTAGAGTTTTTCAGTTCTG 2109
||||||||||||||| | ||||||
Sbjct 1975 AGAATCTAGAGTTTTGCTGTTCTG 1998
Score = 222 bits (120), Expect = 7e-57
Identities = 276/341 (81%), Gaps = 52/341 (15%)
Strand=Plus/Plus
Query 16 AGAGTTTAACTTTCAGACCTGAGGAAACTCATTACGCTTCACTTCCGATTCGCAGAGAGT 75
|||||| |||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 AGAGTTAAACTTTGAGGCCTGAGGAAACTCATTACGCTTCAC-TCCGATTCGCAGAGAGT 59
Query 76 TTCCAACAGACCACAATTGAATAAATATTCTTAATCTTCtttttttttGTTCTTTCTCTT 135
|||| | ||| || | | | | || |||| ||||||||| ||| | | ||
Sbjct 60 TTCC-A-AGA-GAC----G---ACA-A---TT--TCTT-TTTTTTTTT-TTC--T-TATT 98
Query 136 TCGTTAATCCAAATCCGTAAGTACTTTCTTCTTCttattattattattattattattata 195
|||||||||||||||||||||||||||||||||| |||||||
Sbjct 99 TCGTTAATCCAAATCCGTAAGTACTTTCTTCTTC------------------TTATTAT- 139
Query 196 tAATCTCTTCCTTGTTAAAGATTCTCCATTGTTCTCTCCTTCTTCTTCTCCGCT-AAAGG 254
| |||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||
Sbjct 140 T-ATCTCTTCCTTGTTAAAGATTCTCCATTTTTCTCTCCTCCTTCTTCTCCATTGAAAGG 198
Query 255 AATCATATTCAGATCAGTGATTCGttttt-----ct---gggttttctttttttgttttC 306
||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 199 AATCATATTCAGATCAGTGATTCGTTTTTTATTTCTTCTGGGTTTTCATTTTTTGTTTTC 258
Query 307 CGAGTCAAATTTGGAATCTAAAGATCTGACTTTTGAAGCTA 347
| |||||||||||||||| |||||||||||||||||||||
Sbjct 259 GG-GTCAAATTTGGAATCTGAAGATCTGACTTTTGAAGCTA 298
> Ahg484196 jgi|Araly1|484196|fgenesh2_kg.5__188__AT2G02870.1
Length=2169
Score = 878 bits (475), Expect = 0.0
Identities = 918/1126 (82%), Gaps = 54/1126 (5%)
Strand=Plus/Plus
Query 783 CAAGACCAATCTGATTCTAACAACAATGGTAAT-A-GCGATGG---CG-ATTCACTTATC 836
||||| |||||||||||||| |||||||| | | | | || || |||| ||||||
Sbjct 716 CAAGAACAATCTGATTCTAATGACAATGGTGGTGATTCTACGGATTCGCATTCTCTTATC 775
Query 837 AATGATATTGGCAGAGACAATTCTA-TAAGCTGTTTGATTCGTTGCTCGAGGTCTGGTTA 895
||||| ||||| || |||||||| | | | ||||||||| || ||||||||||||| |||
Sbjct 776 AATGAGATTGGGAGGGACAATTCGATTGA-CTGTTTGATCCGCTGCTCGAGGTCTGATTA 834
Query 896 CGGTTCGATTGCTTCTTTAAACCGGAGTTTTCGGTCTTTGGTGAAGACCGGAGAGATTTA 955
||||| ||||||||||| ||||||| ||| || |||||||| |||| |||||||||||
Sbjct 835 TGGTTCAATTGCTTCTTTGAACCGGAATTTCCGTTCTTTGGTAAAGAGTGGAGAGATTTA 894
Query 956 TAGACTCAGGAGGCAAAACCAGATTGTTGAACATTGGGTTTACTTCTCTTGTCAGCTTTT 1015
|||| | ||| | |||| | | |||||||||||||||||||||||||||| ||||| ||
Sbjct 895 TAGATTAAGGCGACAAAGCGGGTTTGTTGAACATTGGGTTTACTTCTCTTGCCAGCTCTT 954
Query 1016 GGAATGGGTTGCTTTCAATCCTTTTGAAAGAAGATGGATGAATTTGCCTACAATGCCTT- 1074
|||||||||||| ||| ||||| | || ||||| |||||| | || || || |||||||
Sbjct 955 GGAATGGGTTGCGTTCGATCCTGTCGAGAGAAGGTGGATGCAGTTACCAACTATGCCTTC 1014
Query 1075 CAGGTGTTACATTCATGTGTGCCGATAAAGAATCTTTAGCTGTTGGTACGGATTTGCTTG 1134
|| ||||||| ||||||||||||||||| || ||| | || ||||| |||||| ||||||
Sbjct 1015 CA-GTGTTACCTTCATGTGTGCCGATAAGGAGTCTCTGGCCGTTGGGACGGATCTGCTTG 1073
Query 1135 TGTTAGGCAAAGATGATTACTCTTCTCATGTTATATATAGATATAGTCTTTTGACTAACT 1194
| ||||| ||||||| | ||||||||||| ||||| ||||| ||||| ||||||| |
Sbjct 1074 TCTTAGGAAAAGATG-CT--TCTTCTCATGTAATATACAGATACAGTCTACTGACTAATT 1130
Query 1195 CTTGGTCTTCCGGTATGAGGATGAATTCTCCGAGGTGTTTGTTTGGCTCAGCGAGTCTAG 1254
|||||||||| ||||||| |||||| |||||||||||||||||||| || ||||| || |
Sbjct 1131 CTTGGTCTTCTGGTATGAAGATGAACTCTCCGAGGTGTTTGTTTGGATCCGCGAGCCTTG 1190
Query 1255 GAGAGATTGCGATCTTTGCTGGTGGTTTTGATTCTTTTG-GCAAA-A-TCAGTGATTCCG 1311
|||||||||| || ||||||||||| | |||||| | | ||| | || ||||| |
Sbjct 1191 GAGAGATTGCTATATTTGCTGGTGGATGTGATTCCCA-GAG-AAAGACTCT-TGATTTTG 1247
Query 1312 CTGAGATGTATAACTCCGAGCTTCAGACTTGGACTA-CACTTCCGAAG-ATGAATAAACC 1369
| || |||||||| || |||||||| ||||||| || | ||||| ||| ||||| |||||
Sbjct 1248 CGGAAATGTATAATTCTGAGCTTCAAACTTGGA-TAACTCTTCC-AAGGATGAACAAACC 1305
Query 1370 AAGGAAGATGTGTTCAGGTGTTTTCATGGATGGGAAGTTCTATGTGATTGGAGGAATTGG 1429
|||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1306 GAGGAAGATGTGTTCGGGTGTTTTTATGGATGGGAAGTTCTATGTAATTGGAGGAATCGG 1365
Query 1430 TGGAAATGATTCGAAAGTGCTT-ACTTGTGGTGAGGAGTTTGATTTAGAGACGAAGAAAT 1488
||| |||||| ||||| ||| || || ||||| || | |||||| ||||| |||||||
Sbjct 1366 TGGTGCTGATTCTAAAGT-CTTGACCTGCGGTGAAGAATATGATTTGGAGACCAAGAAAT 1424
Query 1489 GGACTGAGATACCGGAAATGTCGCCTCCAAGGAGCCG-G--GA--AATGCCG----G-CA 1538
||||| | || || || ||||||||||||| ||||| | || || || | | ||
Sbjct 1425 GGACTCAAATCCCTGACTTGTCGCCTCCAAGAAGCCGTGCTGATCAA-GCTGATATGTCA 1483
Query 1539 GCAGCAGA-G--GCGCCGCCTCTTGTTGCGGTTGTGAATAACGAATTGTATGCTGCTGAT 1595
||||| | | || ||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1484 CCAGCACAAGAAGCACCGCCTCTTGTTGCGGTTGTGAATAACCAATTGTACGCTGCTGAT 1543
Query 1596 CATGCTGATATGGAAGTGAGGAAGTATGATAAGGAGAGTAAGAAATGGTTTACT-TTAGG 1654
|| || ||||||||||||||||||||||||||||||| |||||||||||| ||| || ||
Sbjct 1544 CACGCCGATATGGAAGTGAGGAAGTATGATAAGGAGAATAAGAAATGGTTAACTGTT-GG 1602
Query 1655 GAGATTGCCCGAAAGAGCTGACTCGGTTAACGGTTGGGGA-TTAGCGTTTAGAGCTTGCG 1713
|||||||| |||||||||| |||||||||||| |||||| || || ||||||||||| |
Sbjct 1603 AAGATTGCCTGAAAGAGCTGGCTCGGTTAACGGATGGGGACTT-GCTTTTAGAGCTTGTG 1661
Query 1714 GTGAGAGGTTGATTGTGATTGGTGGTCCTAGG-AGTTCAGGTGGAGGGTACATTGAACTG 1772
| ||| |||| || || |||||||| || | | | | |||| || |||| ||| || |||
Sbjct 1662 GGGAGCGGTTAATCGTTATTGGTGGACCGAAGTACT-CAGGAGGTGGGTTCATAGAGCTG 1720
Query 1773 AATTCATGGATACCATCTAGTGATCGAAG-TCCGCCTCTA-TGGACATTGCTCGGTAGGA 1830
||||| |||||||| || || || | ||| || | | ||||||||||| | ||||
Sbjct 1721 AATTCTTGGATACCG---AGCGA-CGGTGGTCCACCGC-AGTGGACATTGCTTGACAGGA 1775
Query 1831 AACATTCATCG-AATTTTGTTTACAATTGCGCGGTGATGGGTTGCT 1875
||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 1776 AACATTC-TCCTAATTTTGTATACAATTGCGCAGTGATGGGTTGCT 1820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80294236460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5