BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14350.1
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471607 jgi|Araly1|471607|fgenesh2_kg.1__1561__AT1G14350.1 2964 0.0
Ahg484189 jgi|Araly1|484189|fgenesh2_kg.5__181__AT2G02820.2 732 0.0
> Ahg471607 jgi|Araly1|471607|fgenesh2_kg.1__1561__AT1G14350.1
Length=1941
Score = 2964 bits (1605), Expect = 0.0
Identities = 1852/1966 (94%), Gaps = 38/1966 (2%)
Strand=Plus/Plus
Query 7 AAAAAGTTGAAGAAGTCATTGTGTGTGATAGGAGGAGTTGGATTTTTAAAAAAGGTAACG 66
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1 AAAAAGTTGAAGAAGTCATTGTGTGTGATAGGAGGACTTGG-GTTTTAAAAAAGGTAACG 59
Query 67 GAGCGTCgaagaaaaataaatagaaaataaacagagacagaaagaggacatatacagtaa 126
||||||||||| |||||||||||| ||||||||||||| ||| | || |
Sbjct 60 GAGCGTCGAAG-AAAATAAATAGATAATAAACAGAGAC----AGA-G--------AG--A 103
Query 127 gaaaatataaagagagagacagt-agtaagaaagaagaagaagaaaaatggaagatacga 185
| ||| ||||||||||||| ||| | ||| |||||||||||||||||||||||||||||
Sbjct 104 G-AAACATAAAGAGAGAGA-AGTAAAAAAG-AAGAAGAAGAAGAAAAATGGAAGATACGA 160
Query 186 agaagaaaaagaagaagaatattaacaacaaccaagattccaagaaaaaagaGCGTCATA 245
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 161 AGAAGAAAAAGAAGAAGAATATTAACAACAACCACGATTCCAAGAAAAAAGAGCGTCATA 220
Query 246 TTGTTACTTGGTCACAAGAGGAAGATGTTATACTAAGAGAACAAATAACTCTACATGGAA 305
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 221 TTGTTACTTGGTCACAAGAGGAAGATGTTATACTAAGAGAACAAATTACTAAACATGGAA 280
Query 306 CTGAAAATTGGGCGATCATTGCATCAAAGTTCAAAGACAAAAGCACAAGACAATGCAGAA 365
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 281 CTGAAAATTGGGCGATCATTGCATCAAAGTTCAAAGATAAAAGCACAAGACAATGCAGAA 340
Query 366 GAAGATGGTATACATACTTAAACTCTGATTTCAAAAGAGGAGGTTGGTCCCCTGAAGAAG 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GAAGATGGTATACATACTTAAACTCTGATTTCAAAAGAGGAGGTTGGTCCCCTGAAGAAG 400
Query 426 ATATGCTTTTGTGTGAGGCACAAAGAGTATTTGGTAATAGATGGACTGAGATAGCAAAGG 485
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 401 ATATGCTTTTGTGTGAGGCACAAAGAGTTTTTGGGAATAGATGGACTGAGATAGCAAAGG 460
Query 486 TGGTTTCAGGCAGAACTGATAATGCTGTGAAGAACAGGTTTACAACACTTTGTAAGAAGA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TGGTTTCAGGCAGAACTGATAATGCTGTGAAGAACAGGTTTACAACACTTTGTAAGAAGA 520
Query 546 GAGCCAAGCATGAAGCTATGA---CTAAAGACAGCAACTCAAACACCAAAAGAATGTTGT 602
||||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||
Sbjct 521 GAGCCAAGCATGAAGCTATGATGACTAAAGAGAACAACTCAAACAACAAAAGAATGTTGT 580
Query 603 TCTTAGACGGTATCAGTACACCGCGAAAATCCGAGAATGAAACTCCTATTGCTAAGAAAT 662
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 581 TCTTAGACGGTATCAGTACACCGCGAAAATCCGAGAATGAAGCTCCTATTGCTAAGAAAT 640
Query 663 TGAAGAGAAGTCACATTCTAGATCTCACAGAGATCAGTAACTATGGAAGGGCCGAGGCAT 722
||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||| | |
Sbjct 641 TGAAGAGAAGTCAGATTCTAGATCTCACAGAAATCAGTAACTATGGAAAGGCTGAGTCTT 700
Query 723 GTGTGAATCAGCAGATAAGGTCTCCATTTTCGGTTTTAGCTCGAAATGCCACTGGTATTG 782
|||| |||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||
Sbjct 701 GTGTCAATCAGCAGATAAGATCTCCATTTTCGGTATTAGCGCGAAATGCCACGGGTATTG 760
Query 783 ATAGCTTGGAAGAACAGAATCAAACAAGCAATGTGAATGAGAGTGATGGTGAAGGGATGT 842
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 761 ATAGCTTGGATGATCAGAATCAAACAAGCAAGGTGAATGAGAGTGATGGTGAAGGGATGT 820
Query 843 TTCTTAAGAAGGATGATCCAAAAGTGACAGCTTTGATGCAACAAGCTGAACTTTTAAGCT 902
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 821 TTCTTAAGAAGGATGATCCAAAAGTGACAGCTTTGATGCAGCAAGCTGAACTTTTAAGCT 880
Query 903 CCTTGGCGCAGAAAGTTAATGCAGACAACACAGAACAGAGTATGGAGAATGCTTGGAAGG 962
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 881 CCTTGGCGCAGAAAGTTAATGCAGACAACACAGAACAAAGCATGGAGAATGCTTGGAAGG 940
Query 963 TTCTTCAGGACTTCTTGAATAAAGGCAAGGAGAATGATTTATTCAGATATGGAATACCTG 1022
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 941 TTCTTCAGGATTTCTTGAATAAAGGCAAGGAGAATGATTTATTCAGATATGGATTACCTG 1000
Query 1023 ATATAGATTTTAAGATCGAGGAATTTAAGGACCTTATAGAGGATTTGAGGAGTGGTTATG 1082
|||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1001 ATATCGATTTTAAAATCGAGGAATTTAAAGACCTTATTGAGGATTTGAGGAGTGGTTATG 1060
Query 1083 AAGACAATCAATTATCTTGGAGGCAACCTGATCTTCATGACTCACCAGCTAGCTCTGAGT 1142
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1061 AAGACAATCAGCCATCTTGGAGGCAACCTGATCTCCATGACTCACCAGCTAGCTCTGAGT 1120
Query 1143 ATAGTTCCGGATCAACCATCATGGTGGATCAGTCTGGTGATAAAACACAACCATTCTCAG 1202
||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 1121 ATAGTTCAGGATCAACCATCATGGTGGATCAGTCTAGTGATAGAACACAACCCTTCTCAG 1180
Query 1203 C--A-GATACTCAGACAGAACATAAGCAAGTTGGAGAGGAGTTGCTCGTCCCGAAAAATC 1259
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 CTGATGATACTCAGACAGAACATAAGCAAGTTGGAGAGGAGTTGCTCGTCCCGAAAAATC 1240
Query 1260 CTGATGAGAATATGCCCATCTCAGGCGAAGAAAAGTTCAGCTCGCCTATTCAGGTCACGC 1319
||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1241 CTGATGAAAATATGCCTATCTCGGGCGAAGAAAAGTTCAGCTCGCCTATTCAAGTCACGC 1300
Query 1320 CATTGTTCAGATCTTTGGCAGACGGTATACCAAGTCCACAGTTCTCCGAAAGTGAGAGGA 1379
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1301 CATTGTTCAGATCTTTGGCAGACGGTATCCCAAGTCCACAGTTCTCTGAAAGTGAGAGGA 1360
Query 1380 GCTTCCTGCTAAAAACACTAGGGATCGAGTCCTCATCTCCATGTCCAAGTGCTAATCCTT 1439
|||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1361 GCTTCCTGCTGAAAACTCTCGGGATTGAGTCCTCATCTCCATGTCCAAGTGCTAATCCTT 1420
Query 1440 CAAAACCACCCCCTTGCAAAAGAGTCCTTCTCCATAGCTTGTAAACCAACCAACCATC-- 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1421 CAAAACCACCCCCTTGCAAAAGAGTCCTTCTCCATAGCTTGTAAACCAACCAACCAACCA 1480
Query 1498 TCTCTCATACCCTAAACCGCGGTTTAGTCTCCATGGAGACGTAATTTTTTCC-ACTTTTG 1556
|||||| | || ||||||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 1481 TCTCTCTT-CC-TAAACCGCGGTTTTGTCTCCCTGGAGACGTAATTTTTTCCCACTTTTG 1538
Query 1557 CTTAGATTTCATATT-AGGTTTTGCAGCCATATCGGCCTGGAAGTTTTTGTGAAGCGGGC 1615
||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1539 CTTAGATTTCA-ATTTAGGTTCTGCAGCCATATCGGCCTGGAAGTTTTTGTGTAGCGGGC 1597
Query 1616 ATGCCATGATCTGCATTCCTCCCTCAAGGTTTTT-AAGTTTCTTTCCTGGTCCTAGAATG 1674
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1598 ATGCCATGATCTGCATTCCTCCCTCAAGGTTTTTTAAGTTTCTTTCTTGGTCCTAGAATG 1657
Query 1675 TTAACGGTAACATTTTCTAGCCCCATCAAAGAATGTTCTCAAGAATCTGCCATATACTCA 1734
||||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 1658 TTAACGGTAACATTT-CTAGCCCTGTCAAAGAAAGCTCTCAAGAATCTGCCATATACTCA 1716
Query 1735 GATTCAGATTTCTCTTTCTTTTCTTACTTAACATAAGGAAGCCATCTACAAAAGAAGGCA 1794
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 GATTCAGATTTCTCGTTCTTTTCTTACTTAACATAAGGAAGCCATCTACAAAAGAAGGCA 1776
Query 1795 CCAGTGTGTCTTTAAGAAAAAA-TTCTTTGGTTTGTCTCTAAGGGCTTTACTCAGATACA 1853
|||| |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1777 GCAGTCTGTCTT-AAGAAAAAAATTCTTTGGTTTGTCTCTAAGGGCATTACTCAGATACA 1835
Query 1854 TCATCTGAGCATTTTCCCCAGATTTCTTGATTTGTTTTCATCATCTCTGTACAGAATCTC 1913
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1836 TCATCTGAGCATTTTCCCCTGATTTCTTGATTTGTTTTCATCATCTCTGTACAGAATCTT 1895
Query 1914 TATCACATATATATAAAGAAGTTTTCCAGAGTGTAACTTTAGGAAA 1959
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1896 TATCACATATATATAAAGAAGTTTTTCAGAGTGTAACTTTAGGAAA 1941
> Ahg484189 jgi|Araly1|484189|fgenesh2_kg.5__181__AT2G02820.2
Length=2032
Score = 732 bits (396), Expect = 0.0
Identities = 854/1063 (80%), Gaps = 80/1063 (8%)
Strand=Plus/Plus
Query 221 gattccaagaaaaaagaGCGTCATATTGTTACTTGGTCACAAGAGGAAGATGTTATACTA 280
||||||||||| || ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 112 GATTCCAAGAAGAAGGAGCGTCATATTGTTACTTGGTCTCCAGAGGAAGATGATATACTA 171
Query 281 AGAGAA-CAAATAACTCTACATGGAACTGAAAATTGGGCGATCATTGCATCAAAGTTCAA 339
|| ||| ||||| | | ||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 172 AG-GAAGCAAATCAGTTTACTTGGAACTGAAAATTGGGCGATCATTGCATCCAAGTTTAC 230
Query 340 AGACAAAAGCACAAGACAATG-CAGAAGAAGATGGTATACATACTTAAACTCTGATTTCA 398
|| || |||||||| || || | ||||||||||||||||||||||||||||||||||||
Sbjct 231 TGATAAGAGCACAAGGCAGTGTC-GAAGAAGATGGTATACATACTTAAACTCTGATTTCA 289
Query 399 AAAGAGGAGGTTGGTCCCCTGAAGAAGATATGCTTTTGTGTGAGGCACAAAGAGTATTTG 458
| |||||||||||||||||||||||||||| || |||||||||||||| ||| | ||||
Sbjct 290 AGAGAGGAGGTTGGTCCCCTGAAGAAGATACACTGTTGTGTGAGGCACAGAGATTGTTTG 349
Query 459 GTAATAGATGGACTGAGATAGCAAAGGTGGTTTCAGGCAGAACTGATAATGCTGTGAAGA 518
| || || ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct 350 GGAACAGGTGGACTGAGATAGCAAAAGTGGTCTCAGGAAGAACGGATAATGCTGTGAAGA 409
Query 519 ACAGGTTTACAACACTTTGTAAGAAGAGAGCCAAGCATGAAGCTATGACTAAAGA---CA 575
|||||||||| ||||| || |||||||| || ||||||||||| ||| | ||||| ||
Sbjct 410 ACAGGTTTACTACACTGTGCAAGAAGAGGGCTAAGCATGAAGCCATGGCGAAAGAGAACA 469
Query 576 G-----C----------AACTCAAACACCAAAAGAATGTTGTTCTTAGACGGTATCAGTA 620
| | |||||||||| ||| ||| |||||||| ||| ||||| ||||
Sbjct 470 GGATTGCTTGTTGTGTGAACTCAAACAACAAGAGATTGTTGTTCCCAGATGGTATTAGTA 529
Query 621 CACCGCGAAAATCCGAGAA-TGAAACTCCTATTGCTAAGAAATTGAAGAGAAGTCACATT 679
|||| |||||| |||| || |||| ||||| || |||||||| ||| ||||||||| |||
Sbjct 530 CACCTCGAAAAGCCGA-AAGTGAATCTCCTCTTACTAAGAAAATGAGGAGAAGTCATATT 588
Query 680 CTAGATCTCACAGAGATCA-GTAACTATGGA-AGGGC-CGAGGCATGT---G-T-GAATC 731
| |||||| |||||||||| | | ||||||| | | | | ||| | | | |||||
Sbjct 589 CCAGATCTTACAGAGATCAAG-AGCTATGGAGATAGATC-A--CATTTAAAGGTTGAATC 644
Query 732 AGC-A-GA-T-AA--G-GT---C-TCCATTTTCGGTTTTAGCTCGA-AATGCCACTGGTA 779
|| | || | || | || | |||||||||||| |||| | | |||||||| ||||
Sbjct 645 GGCTATGACTCAACAGAGTAGACCTCCATTTTCGGTAGTAGCCC-ACAATGCCACAGGTA 703
Query 780 TTGATAGCTTGGAAGAACAGAATCAAACAAGCAATGTGAATGAGAGTGATGGTGA--A-- 835
||||| || |||| || || |||||| |||||| || |||||||| ||||| |
Sbjct 704 TTGATGGCACCAAAGAGCAAAAACAAACAGGCAATGCAAAAGAGAGTGACGGTGAGGATA 763
Query 836 --GG-------GATG--TTTCTTAAGAAGGATGATCCAAAAGTGACAGCTTTGATGCAAC 884
|| || | ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 764 AAGGTAACCAAGAGGCATTTCTTAAGAAGGATGATCCAAAGGTGACAGCTTTGAAGCAAC 823
Query 885 AAGCTGAACTTTTAAGCTCCTTGGCGCAGAAAGTTAATGCAGACAACACAGAACAGAGTA 944
||||||| ||| | || || ||||| |||||||||||||||||||||||||| || || |
Sbjct 824 AAGCTGAGCTTCTCAGTTCATTGGCCCAGAAAGTTAATGCAGACAACACAGATCAAAGCA 883
Query 945 TGGAGAATGCTTGGAAGGTTCTTCAGGACTTCTTGAATAA-AGGCAAGGAGAATGATTTA 1003
|||||||||| ||||||||||| ||||| ||||||||||| || ||| || |||||| ||
Sbjct 884 TGGAGAATGCCTGGAAGGTTCTACAGGATTTCTTGAATAAGAG-CAAAGAAAATGATCTA 942
Query 1004 TTCAGATATGGAATACCTGATATAGATTTT-AAGATCGAGGAATTTAAGGACCTT-ATAG 1061
|||||||||||||| || ||||| ||||| || |||| |||||||| || || || |
Sbjct 943 TTCAGATATGGAATCCCAGATATCGATTTCCAAC-TCGATGAATTTAAAGATCTCGAT-G 1000
Query 1062 AGGATTTGAGGAGTGGTTATGAAGACAATCAATTATCTTGGAGGCAACCTGATCTTCATG 1121
|||| ||||||| | | ||||||| | ||||| ||||||||||||||||||||| ||||
Sbjct 1001 AGGACTTGAGGATTAATAATGAAGATAGTCAATCATCTTGGAGGCAACCTGATCTCCATG 1060
Query 1122 ACTCACCAGCTAGCTCTGAGTATAGTTC-----C-GGATCAACCATCATGGTGGATCAGT 1175
| |||||||| |||||||| ||||| || | ||||||||||| ||| | ||| |
Sbjct 1061 ATTCACCAGCAAGCTCTGAATATAGCTCAGGATCAGGATCAACCATAATGCCGCATCCTT 1120
Query 1176 CTGGTGATAAAACACAACCATTCTCA-G-CAGATACTCAGACA 1216
||||||||||||| |||| | | || | | ||||||||||||
Sbjct 1121 CTGGTGATAAAACCCAACAAC-C-CATGTCTGATACTCAGACA 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75342504610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5