BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14360.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920325 jgi|Araly1|920325|scaffold_101606.1 1672 0.0
Ahg484188 jgi|Araly1|484188|fgenesh2_kg.5__180__AT2G02810.1 974 0.0
> Ahg920325 jgi|Araly1|920325|scaffold_101606.1
Length=1036
Score = 1672 bits (905), Expect = 0.0
Identities = 991/1034 (96%), Gaps = 0/1034 (0%)
Strand=Plus/Plus
Query 104 ACAATAAGCGACGTGCGGCGATGGAATCTCACGGTTCCGGTCTCCGGCGAGTTCTGTTAT 163
|||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 ACAATAAGCGGCGTGCGGCGATGGAAGCTCACGGTTCCGGTTTCCGGCGAGTTCTGTTAT 60
Query 164 TGTCGTTCTGTGTCGCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGA 223
|||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct 61 TGTCGTTCTGTGTCGCCGGGATCTGGGCCGCTTACATTTACCAAGGCGTTCTTCAAGAGA 120
Query 224 CCTTGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATTTCTGA 283
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCTGTCGACAAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATTTCTGA 180
Query 284 ATTTGGCTCAGAATGTAATCTGCTTGGTTTGGTCTTATATAATGATTAAGCTCTGGTCCA 343
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 ATTTGGCTCAGAATGTAATCTGCTTGGTTTGGTCATATATAATGATTAAGCTCTGGTCCA 240
Query 344 ACGGAGGTTCTGGTGGAGCCCCATGGTGGACGTATTGGAGTGCTGGCATTACTAATACCA 403
| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 241 ATGGAGGTTCTGGTGGAGCCCCATGGTGGACATACTGGAGTGCTGGTATTACTAATACAA 300
Query 404 TTGGTCCTGCTATGGGCATTGAAGCTTTAAAGTATATTAGTTACCCAGCTCAGGTCCTTG 463
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 301 TTGGTCCTGCCATGGGCATTGAAGCTTTGAAGTACATTAGTTACCCAGCTCAGGTCCTTG 360
Query 464 CAAAATCTTCCAAAATGATTCCAGTTATGCTGATGGGCTCCTTAGTTTATGGCATAAGAT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAAATCTTCCAAAATGATTCCAGTTATGCTGATGGGCTCCTTAGTTTATGGCATAAGAT 420
Query 524 ACACTTTGCCTGAGTATCTTTGCACCTTTCTTGTTGCCGGAGGAGTATCTATGTTTGCCC 583
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 421 ACACTTTGCCTGAGTATCTTTGCACCTTTCTTGTTGCGGGAGGTGTATCTATGTTTGCCC 480
Query 584 TTCTTAAGACAAGCTCTAAAACCATCAGCAAGCTAGCACATCCCAATGCACCCCTTGGTT 643
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 481 TTCTTAAGACAAGCTCTAAAACGATCAGCAAGCTAGCACATCCCAATGCACCCCTTGGAT 540
Query 644 ACGGGCTTTGCTTCTTAAACCTTGCCTTTGATGGATTCACAAACGCAACCCAGGATTCCA 703
| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 541 ATGGGCTTTGCTTCTTAAACCTCGCCTTTGATGGATTCACAAATGCCACCCAGGATTCCA 600
Query 704 TTACCGCAAGGTACCCCAAAACTAACGCATGGGACATAATGCTGGGAATGAATTTATGGG 763
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 601 TTACCGCAAGGTACCCAAAAACTAATGCATGGGACATAATGCTGGGAATGAATCTGTGGG 660
Query 764 GAACCATATACAACATGGTCTACATGTTTGGATTGCCACATGGGAGCGGATTTGAAGCTG 823
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 GAACCATATACAACATGGTCTACATGTTTGGATTGCCACATGGGAGCGGATTCGAAGCTG 720
Query 824 TGCAGTTCTGCAAGCAACACCCTGAGGCAGCATGGGACATTCTTATGTACTGTTTATGCG 883
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 TGCAGTTCTGCAAGCAACACCCTGAGGCAGCATGGGACATTCTAATGTACTGTTTATGCG 780
Query 884 GTGCAGTAGGCCAAAACTTCATCTTCTTGACAATAAGCAGATTCGGGTCTCTAGCTAACA 943
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTGCAGTGGGCCAAAACTTCATCTTCTTGACAATAAGCAGATTCGGGTCTCTAGCTAACA 840
Query 944 CGACCATAACCACAACCAGGAAGTTTGTAAGCATCGTGGTATCTTCAGTTTTGAGCGGGA 1003
||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||
Sbjct 841 CGACCATAACCACAACCCGTAAGTTTGTAAGCATCGTGGTGTCTTCAGTTCTGAGCGGGA 900
Query 1004 ATCCGTTATCTTCCAAACAATGGGGATGTGTGTCGATGGTGTTCGGTGGATTGTCTTACC 1063
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 ATCCATTATCGTCCAAACAATGGGGATGTGTGTCGATGGTGTTTGGTGGATTGTCTTACC 960
Query 1064 AAATTTACCTGAAATGGAGGAAGCTGCAGAGAATGCAGAAGAAGAAAAAGGCCTGAAGCT 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 AAATTTACCTGAAATGGAGGAAGCTGCAGAGAATGCAGAAGAAGAAAAAGGCTTGAAGCT 1020
Query 1124 GAGATTGGGGATCA 1137
|||| || ||||||
Sbjct 1021 GAGAATGAGGATCA 1034
> Ahg484188 jgi|Araly1|484188|fgenesh2_kg.5__180__AT2G02810.1
Length=1225
Score = 974 bits (527), Expect = 0.0
Identities = 851/1007 (85%), Gaps = 23/1007 (2%)
Strand=Plus/Plus
Query 115 CGT-GCGGCGATGGA-ATCTCACGGTTCCGG-TCTCCGGCGAGTTCTGTTATTGTCGTTC 171
||| ||||||||||| | ||| || ||||| | |||| ||| | ||||| ||| ||||
Sbjct 70 CGTAGCGGCGATGGAGGT-TCATGGCTCCGGAT-TCCGTCGAATGCTGTTGTTGGCGTTG 127
Query 172 TGTGTCGCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGACCT-TGTC 230
||| || | ||||||||| | || ||||| ||||||||| |||||||||||| || ||||
Sbjct 128 TGTATCTCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAGA-CTCTGTC 186
Query 231 GACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATTTC-TGAATTTGG 289
|| |||| ||||||| ||||| |||||| ||||||||||||||| ||| |||| ||||
Sbjct 187 CACCAAGATATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCA-TTCTTGAACTTGG 245
Query 290 CTCAGAATGTAATCTGCTTGGTTTGGTCTTATATAATGATTAAGCTCTGGTCCAACGGAG 349
|||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 246 CTCAGAGTGTAGTCTGCTTGGTTTGGTCTTATATAATGATCAAGCTCTGGTCAAACGCTG 305
Query 350 GTTCTGGTGGAGCCCCATGGTGGACGTATTGGAGTGCTGGCATTACTAATACCATTGGTC 409
|| ||||||||| ||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct 306 GTAATGGTGGAGCACCATGGTGGGCGTATTGGAGTGCCGGCATTACTAATACGATTGGTC 365
Query 410 CTGCTATGGGCATTGAAGCTTTAAAGTATATTAGTTACCCAGCTCAGGTCCTTGCAAAAT 469
|||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| |
Sbjct 366 CTGCCATGGGAATTGAAGCTTTGAAGTATATCAGTTATCCAGCTCAGGTCCTGGCAAAGT 425
Query 470 CTTCCAAAATGATTCCAGTTATGCTGATGGGCTCCTTAGTTTATGGCATAAGATACACTT 529
| || |||||||||||||||||||| ||||| | || ||||| || ||||||||||| |
Sbjct 426 CGTCGAAAATGATTCCAGTTATGCTAATGGGAACTTTGGTTTACGGAATAAGATACACCT 485
Query 530 TGCCTGAGTATC-TTTGCACCTTTCTTGTTGCCGGAGGAGTATCTATGTTTGCCCTTCTT 588
| ||||| || | |||||||||||||||| || |||||||||||| | ||||| ||||||
Sbjct 486 TCCCTGAATA-CATTTGCACCTTTCTTGTCGCGGGAGGAGTATCTTTCTTTGCTCTTCTT 544
Query 589 AAGACAAGCTCTAAA-ACCATCAGCAAGCTAGCACATCCCAATGCACCCCTT-GGTTACG 646
|||||||| || ||| || || ||||||||||||||||||||||||||| || || ||||
Sbjct 545 AAGACAAGTTC-AAAGACAATTAGCAAGCTAGCACATCCCAATGCACCC-TTAGGCTACG 602
Query 647 GGCTTTGCTTCTTAAACCTTGCCTTTGATGGATTCACAAACGCAACCCAGGATTCCATTA 706
|||||||||||||||||||||||||| |||||||||||||| ||||| || || |||
Sbjct 603 CACTTTGCTTCTTAAACCTTGCCTTTGACGGATTCACAAACGCTACCCAAGACTCTATTG 662
Query 707 CCGCAAGGTACCCCAAAACT-AACGCATGGGACATAATGCTGGGAATGAATTTATGGGGA 765
|| |||| ||||| ||||| || || ||||| |||||||| |||||||| |||||||||
Sbjct 663 CCTCAAGATACCCAAAAACCGAA-GCGTGGGATATAATGCTCGGAATGAACTTATGGGGA 721
Query 766 ACCATATACAACATGGTCTACATGTTTGGATTGCCACATGGGAGCGGATTTGAAGCTGTG 825
|| |||||||||||| | || ||||||||||||||||| |||| ||||| ||||| |
Sbjct 722 ACAATATACAACATGATATATATGTTTGGATTGCCACAAGGGATTGGATTCGAAGCAATT 781
Query 826 CAGTTCTGCAAGCAACACCCTGAGGCAGCATGGGACATTCTTATGTACTGTTTATGCGGT 885
|||||||| |||| |||||| || || |||||||||||||| | ||| ||| |||| |||
Sbjct 782 CAGTTCTGTAAGCTACACCCGGAAGCTGCATGGGACATTCTAAAGTATTGTCTATGTGGT 841
Query 886 GCAGTAGGCCAAAACTTCATCTTCT-TGACAATAAGCAGA-TTCGGGTCTCTAGCTAACA 943
|| || || |||||||||||||| | |||| ||||| | | |||||||| ||||||||||
Sbjct 842 GCCGTGGGACAAAACTTCATCTT-TATGACCATAAGTA-ACTTCGGGTCACTAGCTAACA 899
Query 944 CGACCATAACCACAACCAGGAAGTTTGTAAGCATCGTGGTATCTTCAGTTTTGAGCGGGA 1003
||||||||||||| |||||||||||||| ||||| || ||||| ||||| ||||||| |
Sbjct 900 CGACCATAACCACGACCAGGAAGTTTGTTAGCATAGTTGTATCATCAGTAATGAGCGGAA 959
Query 1004 ATCCGTTATC-TTCCAAACAATGGGGATGTGTGTCGATGGTGTTCGGTGGATTGTCTTAC 1062
|||| || || || || |||||||||||||| |||||||| || ||||| ||||| ||
Sbjct 960 ATCCATTGTCGTTG-AAGCAATGGGGATGTGTTTCGATGGTCTTTGGTGGTTTGTCATAT 1018
Query 1063 CAAATTTACCTGAAATGGAGGAAGCTGCAGAGAATGCAGAAGAAGAA 1109
|| ||||| || ||||||||||| |||||||| || ||||||||||
Sbjct 1019 CAGATTTATCTTAAATGGAGGAAAATGCAGAGAGTGGAGAAGAAGAA 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5