BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14370.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1 2627 0.0
Ahg484186 jgi|Araly1|484186|fgenesh2_kg.5__178__AT2G02800.1 1066 0.0
> Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1
Length=1747
Score = 2627 bits (1422), Expect = 0.0
Identities = 1652/1759 (94%), Gaps = 32/1759 (2%)
Strand=Plus/Plus
Query 1 TTTGCTTCAAAtcctctgttcttcaccttccttgttccttcttctctccttct-ttttta 59
||||||||||||||||||| ||||||||||||||| |||||||||||||| || |||||
Sbjct 1 TTTGCTTCAAATCCTCTGTCCTTCACCTTCCTTGTCCCTTCTTCTCTCCTCCTATTTTTT 60
Query 60 t-atagattttcctttcATGTTGTAATACTTTTATTCTATTAGCGTTCATATTCAGCTAA 118
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATAGATTTTCCTTTCATGTTGGAATACTTTTATTCTATTAGCGTTCATATTCAGCTAA 120
Query 119 ACAGACATTGCGCCGCCGTTAAGTCGAAAGGATAGAAAGAAATTAAAGAAAGAAGAAGCT 178
|||||||||||||||||||||||| ||||||||| ||| | |||| |||||||| ||
Sbjct 121 GCAGACATTGCGCCGCCGTTAAGTCTAAAGGATAG-AAG--A-GAAAG-AAGAAGAAACT 175
Query 179 TGTTGTCTTTGCTTCTT-GAGGCTCTCTTCTTGTCTTGATCATCTGTTACGTTGTTCCAC 237
|||||| || ||||||| |||||| | ||||||||||||||||||||| |||||||||||
Sbjct 176 TGTTGTGTTGGCTTCTTCGAGGCT-TGTTCTTGTCTTGATCATCTGTTTCGTTGTTCCAC 234
Query 238 GAAAAGAACAG-TAGCTTTGTCTCTCCATATAGGGTTATTATCTGAAATGGGTAATTGTT 296
| ||||| | ||||||||||| || | | ||||||| |||||||||||||||||
Sbjct 235 G---AGAAC-GATAGCTTTGTCTTTCGTTGTTCATTTATTATTTGAAATGGGTAATTGTT 290
Query 297 TAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACATGCTAATTCTGCTTCTT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACATGCTAATTCTGCTTCTT 350
Query 357 CGGGCTCTAAAGTTTCAAGCAAGACAAGCCGTTCAACGGGTCCTTCAGGACTAAGCACAA 416
||| ||| |||||||| |||||||||||||||||||||| |||||||||| |||||||||
Sbjct 351 CGGCCTCGAAAGTTTCGAGCAAGACAAGCCGTTCAACGGTTCCTTCAGGATTAAGCACAA 410
Query 417 CTTCTTACAGCACAGATAGTAGTTTTGGGCCATTACCAACACTTAGGACAGAAGGAGAGA 476
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 411 CTTCTTACAGCACAGATAGTAGTTTAGGACCATTACCAACGCTTAGGACAGAAGGAGAGA 470
Query 477 TACTTTCATCGCCTAACCTAAAAGCTTTCACTTTCAACGAACTCAAGAACGCGACTAAGA 536
||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 471 TACTTTCATCGCCAAACTTAAAAGCTTTCACTTTCAACGAACTCAAGAACGCAACTAAGA 530
Query 537 ACTTTCGTCAAGATAATCTACTAGGGGAAGGAGGTTTCGGTTGTGTATTCAAAGGATGGA 596
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 531 ACTTTCGTCAAGATAATCTTCTAGGCGAAGGAGGTTTCGGTTGTGTATTCAAAGGATGGA 590
Query 597 TTGATCAAACATCTCTCACTGCTTCACGTCCC-GGTTCTGGAATCGTTGTTGCTGTTAAG 655
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 591 TTGATCAAACATCTCTCACTGCTTCACG-CCCTGGTTCTGGAATCGTTGTTGCTGTTAAG 649
Query 656 CAGCTTAAGCCTGAAGGTTTTCAAGGTCATAAAGAGTGGTTGACTGAAGTAAACTATCTT 715
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CTGCTTAAGCCTGAAGGTTTTCAAGGTCATAAAGAGTGGTTGACTGAAGTAAACTATCTT 709
Query 716 GGTCAACTTAGTCACCCAAATCTTGTATTACTAGTTGGGTATTGCGCGGAAGGCGAAAAC 775
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 710 GGTCAACTTAGTCACCCAAATCTTGTATTACTCGTTGGATACTGCGCGGAAGGCGAAAAC 769
Query 776 CGGCTTCTTGTATATGAATTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAGACGT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CGGCTTCTTGTATATGAATTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAGACGT 829
Query 836 GGGGCGCAGCCACTTACATGGGCAATAAGGATGAAAGTGGCGGTAGGTGCAGCTAAAGGG 895
|| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 830 GGTGCGCAACCACTTACATGGGCGATAAGGATGAAAGTGGCAGTAGGTGCAGCTAAAGGG 889
Query 896 CTAACTTTTCTTCATGAAGCAAAGTCACAAGTGATATACAGAGACTTTAAAGCTGCTAAC 955
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 890 CTAACTTTTCTTCATGAAGCAAAGGCACAAGTGATATACAGAGACTTTAAAGCTGCTAAC 949
Query 956 ATTCTACTCGACGCTGACTTCAATGCTAAGCTTTCAGATTTCGGATTGGCAAAAGCAGGT 1015
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 950 ATTCTACTCGACGCTGAGTTCAATGCTAAGCTTTCGGATTTCGGATTGGCAAAAGCAGGG 1009
Query 1016 CCTACTGGTGATAATACACATGTGTCAACAAAGGTCATTGGTACTCATGGATATGCAGCT 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CCTACTGGTGATAATACACATGTGTCAACAAAGGTCATTGGTACTCATGGATATGCAGCA 1069
Query 1076 CCTGAATATGTTGCCACAGGTAGATTAACCGCAAAGAGTGATGTGTACAGCTTCGGGGTC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CCTGAATATGTTGCCACAGGTAGATTAACCGCAAAGAGTGATGTGTACAGCTTCGGGGTC 1129
Query 1136 GTGCTACTAGAACTAATATCAGGACGGCGTGCCATGGACAATTCGAATGGAGGAAACGAG 1195
|| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1130 GTACTACTAGAACTAATATCAGGACGGCGTGCCATGGACAAGTCAAATGGGGGAAACGAA 1189
Query 1196 TATAGTCTTGTAGATTGGGCAACACCGTACCTTGGCGATAAGCGAAAGCTTTTTCGCATA 1255
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TATAGTCTTGTGGACTGGGCAACACCGTACCTTGGCGATAAGCGAAAGCTTTTTCGCATA 1249
Query 1256 ATGGACACGAAACTAGGGGGTCAATATCCACAAAAGGGAGCTTTCACAGCTGCTAATCTT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 ATGGACACGAAACTAGGGGGTCAATATCCACAAAAGGGAGCTTTCACAGCTGCTAATCTT 1309
Query 1316 GCATTGCAATGCTTAAATCCCGATGCAAAACTCCGGCCAAAAATGTCAGAGGTTTTAGTC 1375
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 1310 GCATTGCAATGCTTAAATCCTGATGCAAAACTCAGGCCGAAAATGTCAGAGGTTTTAGTC 1369
Query 1376 ACATTAGAACAGCTAGAATCCGTTGCTAAACCTGGAACCAAACACACCCAAATGGAATCT 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 ACATTAGAACAGCTAGAATCCGTTGCTAAACCTGGAACCAAACACACCCAAATGGAATCT 1429
Query 1436 CCAAGATTTCATCATTCTTCTGTTATGCAGAAATCTCCGGTAAGATATAGTCATGATCGG 1495
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CCAAGATTTCATCATTCCTCTGTTATGCAGAAATCTCCGGTAAGATATAGTCATGATCGG 1489
Query 1496 CCTCTGCTGCACATGACTCCTGGTGCATCGCCTTTACCTTCTTACACTCAATCTCCTCGT 1555
|||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1490 CCTCTGCTGCACATTACTCCTGGTGCATCGCCTTTACCATCTTACAGTCAATCTCCTCGT 1549
Query 1556 GTAAGATGAAACACATTT-AAGAAAACAGATCGTGCTTTATGCTTGTATGTGTACTATAT 1614
|||||||||| ||||||| ||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 1550 GTAAGATGAAGCACATTTTAAGAAAATAGATCTTGCTTTATGCTTGTATATGTACTATAT 1609
Query 1615 GTAAAA---A---T--G-----CAGGCTTGTCTGTGTAATTAGAGAGGAGTGATTGCAAA 1661
|||||| | | | |||| ||||||||||||| ||||||||||| ||||||
Sbjct 1610 GTAAAATGCAGGATTTGAGATTCAGGTTTGTCTGTGTAATCGGAGAGGAGTGAATGCAAA 1669
Query 1662 GGTTTATACAGAGATTAACTATTTACTTCAAC-TATTTTGTGTCTTCAAACATATCAGAG 1720
||||| ||||||||| |||||||||||| ||| | ||||| |||||||||||||||||||
Sbjct 1670 GGTTTGTACAGAGATGAACTATTTACTTAAACCT-TTTTGAGTCTTCAAACATATCAGAG 1728
Query 1721 TAAATTGAAGCAAGATATG 1739
||||||||||||| |||||
Sbjct 1729 TAAATTGAAGCAACATATG 1747
> Ahg484186 jgi|Araly1|484186|fgenesh2_kg.5__178__AT2G02800.1
Length=1469
Score = 1066 bits (577), Expect = 0.0
Identities = 1075/1310 (82%), Gaps = 56/1310 (4%)
Strand=Plus/Plus
Query 281 GAAATGGGTAATTGTTTAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACAT 340
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||| || |||
Sbjct 56 GAAATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCATAGTCCTCAT 115
Query 341 GCTAATTCTGCTTC-TTCGGGCTCTAA-AGTTTCAAGCAAGACAAGCCGTTCAACGGGTC 398
|||||||||||||| || | |||| || |||||||||||||||||| ||||| || | ||
Sbjct 116 GCTAATTCTGCTTCGTT-GAGCTC-AAGAGTTTCAAGCAAGACAAGTCGTTCCACAGTTC 173
Query 399 CTTCAGGAC-TAAGCACAACTTCTTACAGCACAGATAGTAGTTTTGGGCCATTACCAACA 457
||||| | | |||||| || ||||||||| ||| | || | | | | ||||| |||
Sbjct 174 CTTCAAG-CTTAAGCATAAATTCTTACAG--CAG-T-GT-G----GAGTCTTTACCTACA 223
Query 458 CTTAGGACAGAAGGAGAGATACTT-TCATCGCCTAACCTAAAAGCTTTCA-CTTTCAACG 515
| || |||||||||||||| || ||||| || || || |||||||||| |||| ||||
Sbjct 224 CCAAGAACAGAAGGAGAGAT-TTTGTCATCACCAAATCTTAAAGCTTTCACCTTT-AACG 281
Query 516 AACTCAAGAACGCGACTAAGAACTTT-CGTCAAGATAATCTACTAGGGGAAGGAGGTTTC 574
| ||||||||||| |||| ||| ||| || | |||| ||| |||| |||||||||||
Sbjct 282 AGCTCAAGAACGCTACTAGGAA-TTTCCGACCCGATAGTCTTTTAGGTGAAGGAGGTTTT 340
Query 575 GGTTGTGTATTCAAAGGATGGATTGATCAAACAT-CTCTCACTGCTTCACGTCCCGGTTC 633
|||| ||| || ||||||||||||||| ||| | || | ||||||||| || |||||
Sbjct 341 GGTTATGTGTTTAAAGGATGGATTGATGGAAC-TACTTTAACTGCTTCAAAACCGGGTTC 399
Query 634 TGGAATCGTTGTTGCTGTTAAGCAGCTT-AAGCCTGAAGGTTTTCAAGGTCATAAAGAGT 692
|||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||| ||||
Sbjct 400 TGGAATCGTTGTCGCTGTTAAGAAGCTTAAAG-CTGAAGGTTTTCAAGGTCATAAGGAGT 458
Query 693 GGTTGACTGAAGTAAACTATCTTGGTCAACTTAGTCACCCAAATCTTGT-ATTACTAGTT 751
||||||||||||| |||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 459 GGTTGACTGAAGTGAACTATCTTGGTCAGCTTAGTCACCCAAATCTTGTCA-AACTAGTT 517
Query 752 GGGTATTGCGCGGAAGGCGAAAACCGGCTT-CTTGTATATGAATTCATGCCAAAAGGAAG 810
|||||||| | || |||||||||||| || || ||||| || |||||||||||||||||
Sbjct 518 GGGTATTGTGTAGAGGGCGAAAACCGG-TTACTGGTATACGAGTTCATGCCAAAAGGAAG 576
Query 811 CTTGGAGAATCATCTTTTTAGACGTGGGGCGCAGCCACTTACATGGGCAATAAGGATGAA 870
||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 577 CTTGGAGAATCATCTTTTTAGACGTGGTGCACAGCCACTTACGTGGGCTATAAGGATGAA 636
Query 871 AGTGGCGGTAGGTGCAGCTAAAGGG-CTAACTTTTCTTCATGAAGCAAAGTCACAAGTGA 929
||| || |||| ||||| || ||| || |||||||| ||||| ||||| || |||||||
Sbjct 637 AGTTGCAATAGGAGCAGCCAA-GGGACTTACTTTTCTCCATGATGCAAAATCGCAAGTGA 695
Query 930 TATACAGAGACTTTAAAGCTGCTAACATTCTACTCGACGCTGACTTCAAT-GCTAAGCTT 988
|||||||||||||||||||||||||||| ||||||||||| || ||||| | ||| |||
Sbjct 696 TATACAGAGACTTTAAAGCTGCTAACATCCTACTCGACGCGGAATTCAACAG-TAAACTT 754
Query 989 TCAGATTTCGGAT-TGGCAAAAGCAGGTCCTACTGGTGATAATACACATGTGTCAACA-A 1046
||||| ||||| | | || |||||||||||||| ||||| || || |||||||| ||| |
Sbjct 755 TCAGACTTCGG-TCTAGCTAAAGCAGGTCCTACCGGTGACAAGACTCATGTGTCCACACA 813
Query 1047 AGGTCATTGGTACTCATGGATATGCAGCTCCTGAATATGTTGCCACAGGTAGATTAACCG 1106
|| |||| |||||||| |||||||| || ||||||||||| || |||||| ||||||| |
Sbjct 814 AG-TCATGGGTACTCACGGATATGCCGCCCCTGAATATGTAGCAACAGGTCGATTAACAG 872
Query 1107 CAAAGAGTGATGTGTACAGCTTCGGGGTCGTGCTACTAGAACTAATATCAGGACGGCGTG 1166
| ||||| ||||| ||||| ||||| || || ||||| ||| || | |||||||| | |
Sbjct 873 CTAAGAGCGATGTATACAGTTTCGGTGTGGTACTACTGGAATTACTCTCAGGACGAAGAG 932
Query 1167 CCATGGACAATTCGAATG-GAGGAAACGAGTATAGTCTTGTAGATTGGGCAACACCGTAC 1225
| ||||||| || || | | |||| || | |||||||| || ||||||||||||||
Sbjct 933 CGGTGGACAAATCAAAAGTG-GGAATGGAACAGAGTCTTGTGGACTGGGCAACACCGTAT 991
Query 1226 CTTGGCGATAAGCGAAAGCTTTTTCGCATAATGGACACGAAACTAGGGGGTCAATATCCA 1285
||||| || ||||||||||| ||| | ||||||||||||| | |||| ||||| ||| |
Sbjct 992 CTTGGTGACAAGCGAAAGCTCTTTAGAATAATGGACACGAGATTAGGCGGTCAGTATTCT 1051
Query 1286 CAAAAGGGAGCTTTCACAGCTGCTAATCTTGCATTGCAATGCTTAAATCCCGATGCAAAA 1345
||||| ||||| | |||||| |||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1052 CAAAAAGGAGCATACACAGCAGCTAGTCTTGCATTGCAATGCTTAAACCCCGACGCAAAA 1111
Query 1346 CTCCGGCCAAAAATGTCAGAGGTTTTAGTCACATTAGAACAGCTAGAATC--CGTTGC-T 1402
||| | || ||||||||||| ||||| | || |||||| ||||| ||||| || | |
Sbjct 1112 CTCAGACCTAAAATGTCAGAAGTTTTGGCCAAATTAGATCAGCTTGAATCAACGAAACCT 1171
Query 1403 A-AACCTGGAACC--AAACACAC---C-CAAATGGAATCTCCAAGATTTCA-TCATTCTT 1454
||| ||||| ||||| || | || || || || |||||| | | | || |
Sbjct 1172 GGAAC-TGGAATTGGAAACAGACAAGCTCAGATTGATTCCCCAAGAGGT-AGTAATGGAT 1229
Query 1455 CTGTTATGCAGAAATCTCCG-GTAAGATATAGTCATGATCGGCCTCTGCTG-CACATGAC 1512
||||| | |||||||||||| | | | |||||| ||||||||||||| || ||||| ||
Sbjct 1230 CTGTTGTACAGAAATCTCCGAGGAGG-TATAGTTATGATCGGCCTCT-CTTACACATAAC 1287
Query 1513 TCCTGGTGCATCGCCTTTACCTTCTTACACTCAATCTCCTCGTGTAAGAT 1562
||||||||| || ||||| |||||| ||| ||| ||||||||||||||||
Sbjct 1288 TCCTGGTGCTTCTCCTTTGCCTTCTCACAATCACTCTCCTCGTGTAAGAT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5