BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14370.1 Length=1743 Score E Sequences producing significant alignments: (Bits) Value Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1 2627 0.0 Ahg484186 jgi|Araly1|484186|fgenesh2_kg.5__178__AT2G02800.1 1066 0.0 > Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1 Length=1747 Score = 2627 bits (1422), Expect = 0.0 Identities = 1652/1759 (94%), Gaps = 32/1759 (2%) Strand=Plus/Plus Query 1 TTTGCTTCAAAtcctctgttcttcaccttccttgttccttcttctctccttct-ttttta 59 ||||||||||||||||||| ||||||||||||||| |||||||||||||| || ||||| Sbjct 1 TTTGCTTCAAATCCTCTGTCCTTCACCTTCCTTGTCCCTTCTTCTCTCCTCCTATTTTTT 60 Query 60 t-atagattttcctttcATGTTGTAATACTTTTATTCTATTAGCGTTCATATTCAGCTAA 118 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 TCATAGATTTTCCTTTCATGTTGGAATACTTTTATTCTATTAGCGTTCATATTCAGCTAA 120 Query 119 ACAGACATTGCGCCGCCGTTAAGTCGAAAGGATAGAAAGAAATTAAAGAAAGAAGAAGCT 178 |||||||||||||||||||||||| ||||||||| ||| | |||| |||||||| || Sbjct 121 GCAGACATTGCGCCGCCGTTAAGTCTAAAGGATAG-AAG--A-GAAAG-AAGAAGAAACT 175 Query 179 TGTTGTCTTTGCTTCTT-GAGGCTCTCTTCTTGTCTTGATCATCTGTTACGTTGTTCCAC 237 |||||| || ||||||| |||||| | ||||||||||||||||||||| ||||||||||| Sbjct 176 TGTTGTGTTGGCTTCTTCGAGGCT-TGTTCTTGTCTTGATCATCTGTTTCGTTGTTCCAC 234 Query 238 GAAAAGAACAG-TAGCTTTGTCTCTCCATATAGGGTTATTATCTGAAATGGGTAATTGTT 296 | ||||| | ||||||||||| || | | ||||||| ||||||||||||||||| Sbjct 235 G---AGAAC-GATAGCTTTGTCTTTCGTTGTTCATTTATTATTTGAAATGGGTAATTGTT 290 Query 297 TAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACATGCTAATTCTGCTTCTT 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 TAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACATGCTAATTCTGCTTCTT 350 Query 357 CGGGCTCTAAAGTTTCAAGCAAGACAAGCCGTTCAACGGGTCCTTCAGGACTAAGCACAA 416 ||| ||| |||||||| |||||||||||||||||||||| |||||||||| ||||||||| Sbjct 351 CGGCCTCGAAAGTTTCGAGCAAGACAAGCCGTTCAACGGTTCCTTCAGGATTAAGCACAA 410 Query 417 CTTCTTACAGCACAGATAGTAGTTTTGGGCCATTACCAACACTTAGGACAGAAGGAGAGA 476 ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| Sbjct 411 CTTCTTACAGCACAGATAGTAGTTTAGGACCATTACCAACGCTTAGGACAGAAGGAGAGA 470 Query 477 TACTTTCATCGCCTAACCTAAAAGCTTTCACTTTCAACGAACTCAAGAACGCGACTAAGA 536 ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 471 TACTTTCATCGCCAAACTTAAAAGCTTTCACTTTCAACGAACTCAAGAACGCAACTAAGA 530 Query 537 ACTTTCGTCAAGATAATCTACTAGGGGAAGGAGGTTTCGGTTGTGTATTCAAAGGATGGA 596 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 531 ACTTTCGTCAAGATAATCTTCTAGGCGAAGGAGGTTTCGGTTGTGTATTCAAAGGATGGA 590 Query 597 TTGATCAAACATCTCTCACTGCTTCACGTCCC-GGTTCTGGAATCGTTGTTGCTGTTAAG 655 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 591 TTGATCAAACATCTCTCACTGCTTCACG-CCCTGGTTCTGGAATCGTTGTTGCTGTTAAG 649 Query 656 CAGCTTAAGCCTGAAGGTTTTCAAGGTCATAAAGAGTGGTTGACTGAAGTAAACTATCTT 715 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 CTGCTTAAGCCTGAAGGTTTTCAAGGTCATAAAGAGTGGTTGACTGAAGTAAACTATCTT 709 Query 716 GGTCAACTTAGTCACCCAAATCTTGTATTACTAGTTGGGTATTGCGCGGAAGGCGAAAAC 775 |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 710 GGTCAACTTAGTCACCCAAATCTTGTATTACTCGTTGGATACTGCGCGGAAGGCGAAAAC 769 Query 776 CGGCTTCTTGTATATGAATTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAGACGT 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 CGGCTTCTTGTATATGAATTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAGACGT 829 Query 836 GGGGCGCAGCCACTTACATGGGCAATAAGGATGAAAGTGGCGGTAGGTGCAGCTAAAGGG 895 || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 830 GGTGCGCAACCACTTACATGGGCGATAAGGATGAAAGTGGCAGTAGGTGCAGCTAAAGGG 889 Query 896 CTAACTTTTCTTCATGAAGCAAAGTCACAAGTGATATACAGAGACTTTAAAGCTGCTAAC 955 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 890 CTAACTTTTCTTCATGAAGCAAAGGCACAAGTGATATACAGAGACTTTAAAGCTGCTAAC 949 Query 956 ATTCTACTCGACGCTGACTTCAATGCTAAGCTTTCAGATTTCGGATTGGCAAAAGCAGGT 1015 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 950 ATTCTACTCGACGCTGAGTTCAATGCTAAGCTTTCGGATTTCGGATTGGCAAAAGCAGGG 1009 Query 1016 CCTACTGGTGATAATACACATGTGTCAACAAAGGTCATTGGTACTCATGGATATGCAGCT 1075 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 CCTACTGGTGATAATACACATGTGTCAACAAAGGTCATTGGTACTCATGGATATGCAGCA 1069 Query 1076 CCTGAATATGTTGCCACAGGTAGATTAACCGCAAAGAGTGATGTGTACAGCTTCGGGGTC 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1070 CCTGAATATGTTGCCACAGGTAGATTAACCGCAAAGAGTGATGTGTACAGCTTCGGGGTC 1129 Query 1136 GTGCTACTAGAACTAATATCAGGACGGCGTGCCATGGACAATTCGAATGGAGGAAACGAG 1195 || |||||||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 1130 GTACTACTAGAACTAATATCAGGACGGCGTGCCATGGACAAGTCAAATGGGGGAAACGAA 1189 Query 1196 TATAGTCTTGTAGATTGGGCAACACCGTACCTTGGCGATAAGCGAAAGCTTTTTCGCATA 1255 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1190 TATAGTCTTGTGGACTGGGCAACACCGTACCTTGGCGATAAGCGAAAGCTTTTTCGCATA 1249 Query 1256 ATGGACACGAAACTAGGGGGTCAATATCCACAAAAGGGAGCTTTCACAGCTGCTAATCTT 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1250 ATGGACACGAAACTAGGGGGTCAATATCCACAAAAGGGAGCTTTCACAGCTGCTAATCTT 1309 Query 1316 GCATTGCAATGCTTAAATCCCGATGCAAAACTCCGGCCAAAAATGTCAGAGGTTTTAGTC 1375 |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct 1310 GCATTGCAATGCTTAAATCCTGATGCAAAACTCAGGCCGAAAATGTCAGAGGTTTTAGTC 1369 Query 1376 ACATTAGAACAGCTAGAATCCGTTGCTAAACCTGGAACCAAACACACCCAAATGGAATCT 1435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 ACATTAGAACAGCTAGAATCCGTTGCTAAACCTGGAACCAAACACACCCAAATGGAATCT 1429 Query 1436 CCAAGATTTCATCATTCTTCTGTTATGCAGAAATCTCCGGTAAGATATAGTCATGATCGG 1495 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1430 CCAAGATTTCATCATTCCTCTGTTATGCAGAAATCTCCGGTAAGATATAGTCATGATCGG 1489 Query 1496 CCTCTGCTGCACATGACTCCTGGTGCATCGCCTTTACCTTCTTACACTCAATCTCCTCGT 1555 |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1490 CCTCTGCTGCACATTACTCCTGGTGCATCGCCTTTACCATCTTACAGTCAATCTCCTCGT 1549 Query 1556 GTAAGATGAAACACATTT-AAGAAAACAGATCGTGCTTTATGCTTGTATGTGTACTATAT 1614 |||||||||| ||||||| ||||||| ||||| |||||||||||||||| |||||||||| Sbjct 1550 GTAAGATGAAGCACATTTTAAGAAAATAGATCTTGCTTTATGCTTGTATATGTACTATAT 1609 Query 1615 GTAAAA---A---T--G-----CAGGCTTGTCTGTGTAATTAGAGAGGAGTGATTGCAAA 1661 |||||| | | | |||| ||||||||||||| ||||||||||| |||||| Sbjct 1610 GTAAAATGCAGGATTTGAGATTCAGGTTTGTCTGTGTAATCGGAGAGGAGTGAATGCAAA 1669 Query 1662 GGTTTATACAGAGATTAACTATTTACTTCAAC-TATTTTGTGTCTTCAAACATATCAGAG 1720 ||||| ||||||||| |||||||||||| ||| | ||||| ||||||||||||||||||| Sbjct 1670 GGTTTGTACAGAGATGAACTATTTACTTAAACCT-TTTTGAGTCTTCAAACATATCAGAG 1728 Query 1721 TAAATTGAAGCAAGATATG 1739 ||||||||||||| ||||| Sbjct 1729 TAAATTGAAGCAACATATG 1747 > Ahg484186 jgi|Araly1|484186|fgenesh2_kg.5__178__AT2G02800.1 Length=1469 Score = 1066 bits (577), Expect = 0.0 Identities = 1075/1310 (82%), Gaps = 56/1310 (4%) Strand=Plus/Plus Query 281 GAAATGGGTAATTGTTTAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACAT 340 |||||||||||||| ||||||||||||||||||||||||| ||||| |||||| || ||| Sbjct 56 GAAATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCATAGTCCTCAT 115 Query 341 GCTAATTCTGCTTC-TTCGGGCTCTAA-AGTTTCAAGCAAGACAAGCCGTTCAACGGGTC 398 |||||||||||||| || | |||| || |||||||||||||||||| ||||| || | || Sbjct 116 GCTAATTCTGCTTCGTT-GAGCTC-AAGAGTTTCAAGCAAGACAAGTCGTTCCACAGTTC 173 Query 399 CTTCAGGAC-TAAGCACAACTTCTTACAGCACAGATAGTAGTTTTGGGCCATTACCAACA 457 ||||| | | |||||| || ||||||||| ||| | || | | | | ||||| ||| Sbjct 174 CTTCAAG-CTTAAGCATAAATTCTTACAG--CAG-T-GT-G----GAGTCTTTACCTACA 223 Query 458 CTTAGGACAGAAGGAGAGATACTT-TCATCGCCTAACCTAAAAGCTTTCA-CTTTCAACG 515 | || |||||||||||||| || ||||| || || || |||||||||| |||| |||| Sbjct 224 CCAAGAACAGAAGGAGAGAT-TTTGTCATCACCAAATCTTAAAGCTTTCACCTTT-AACG 281 Query 516 AACTCAAGAACGCGACTAAGAACTTT-CGTCAAGATAATCTACTAGGGGAAGGAGGTTTC 574 | ||||||||||| |||| ||| ||| || | |||| ||| |||| ||||||||||| Sbjct 282 AGCTCAAGAACGCTACTAGGAA-TTTCCGACCCGATAGTCTTTTAGGTGAAGGAGGTTTT 340 Query 575 GGTTGTGTATTCAAAGGATGGATTGATCAAACAT-CTCTCACTGCTTCACGTCCCGGTTC 633 |||| ||| || ||||||||||||||| ||| | || | ||||||||| || ||||| Sbjct 341 GGTTATGTGTTTAAAGGATGGATTGATGGAAC-TACTTTAACTGCTTCAAAACCGGGTTC 399 Query 634 TGGAATCGTTGTTGCTGTTAAGCAGCTT-AAGCCTGAAGGTTTTCAAGGTCATAAAGAGT 692 |||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||| |||| Sbjct 400 TGGAATCGTTGTCGCTGTTAAGAAGCTTAAAG-CTGAAGGTTTTCAAGGTCATAAGGAGT 458 Query 693 GGTTGACTGAAGTAAACTATCTTGGTCAACTTAGTCACCCAAATCTTGT-ATTACTAGTT 751 ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||| Sbjct 459 GGTTGACTGAAGTGAACTATCTTGGTCAGCTTAGTCACCCAAATCTTGTCA-AACTAGTT 517 Query 752 GGGTATTGCGCGGAAGGCGAAAACCGGCTT-CTTGTATATGAATTCATGCCAAAAGGAAG 810 |||||||| | || |||||||||||| || || ||||| || ||||||||||||||||| Sbjct 518 GGGTATTGTGTAGAGGGCGAAAACCGG-TTACTGGTATACGAGTTCATGCCAAAAGGAAG 576 Query 811 CTTGGAGAATCATCTTTTTAGACGTGGGGCGCAGCCACTTACATGGGCAATAAGGATGAA 870 ||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct 577 CTTGGAGAATCATCTTTTTAGACGTGGTGCACAGCCACTTACGTGGGCTATAAGGATGAA 636 Query 871 AGTGGCGGTAGGTGCAGCTAAAGGG-CTAACTTTTCTTCATGAAGCAAAGTCACAAGTGA 929 ||| || |||| ||||| || ||| || |||||||| ||||| ||||| || ||||||| Sbjct 637 AGTTGCAATAGGAGCAGCCAA-GGGACTTACTTTTCTCCATGATGCAAAATCGCAAGTGA 695 Query 930 TATACAGAGACTTTAAAGCTGCTAACATTCTACTCGACGCTGACTTCAAT-GCTAAGCTT 988 |||||||||||||||||||||||||||| ||||||||||| || ||||| | ||| ||| Sbjct 696 TATACAGAGACTTTAAAGCTGCTAACATCCTACTCGACGCGGAATTCAACAG-TAAACTT 754 Query 989 TCAGATTTCGGAT-TGGCAAAAGCAGGTCCTACTGGTGATAATACACATGTGTCAACA-A 1046 ||||| ||||| | | || |||||||||||||| ||||| || || |||||||| ||| | Sbjct 755 TCAGACTTCGG-TCTAGCTAAAGCAGGTCCTACCGGTGACAAGACTCATGTGTCCACACA 813 Query 1047 AGGTCATTGGTACTCATGGATATGCAGCTCCTGAATATGTTGCCACAGGTAGATTAACCG 1106 || |||| |||||||| |||||||| || ||||||||||| || |||||| ||||||| | Sbjct 814 AG-TCATGGGTACTCACGGATATGCCGCCCCTGAATATGTAGCAACAGGTCGATTAACAG 872 Query 1107 CAAAGAGTGATGTGTACAGCTTCGGGGTCGTGCTACTAGAACTAATATCAGGACGGCGTG 1166 | ||||| ||||| ||||| ||||| || || ||||| ||| || | |||||||| | | Sbjct 873 CTAAGAGCGATGTATACAGTTTCGGTGTGGTACTACTGGAATTACTCTCAGGACGAAGAG 932 Query 1167 CCATGGACAATTCGAATG-GAGGAAACGAGTATAGTCTTGTAGATTGGGCAACACCGTAC 1225 | ||||||| || || | | |||| || | |||||||| || |||||||||||||| Sbjct 933 CGGTGGACAAATCAAAAGTG-GGAATGGAACAGAGTCTTGTGGACTGGGCAACACCGTAT 991 Query 1226 CTTGGCGATAAGCGAAAGCTTTTTCGCATAATGGACACGAAACTAGGGGGTCAATATCCA 1285 ||||| || ||||||||||| ||| | ||||||||||||| | |||| ||||| ||| | Sbjct 992 CTTGGTGACAAGCGAAAGCTCTTTAGAATAATGGACACGAGATTAGGCGGTCAGTATTCT 1051 Query 1286 CAAAAGGGAGCTTTCACAGCTGCTAATCTTGCATTGCAATGCTTAAATCCCGATGCAAAA 1345 ||||| ||||| | |||||| |||| ||||||||||||||||||||| ||||| |||||| Sbjct 1052 CAAAAAGGAGCATACACAGCAGCTAGTCTTGCATTGCAATGCTTAAACCCCGACGCAAAA 1111 Query 1346 CTCCGGCCAAAAATGTCAGAGGTTTTAGTCACATTAGAACAGCTAGAATC--CGTTGC-T 1402 ||| | || ||||||||||| ||||| | || |||||| ||||| ||||| || | | Sbjct 1112 CTCAGACCTAAAATGTCAGAAGTTTTGGCCAAATTAGATCAGCTTGAATCAACGAAACCT 1171 Query 1403 A-AACCTGGAACC--AAACACAC---C-CAAATGGAATCTCCAAGATTTCA-TCATTCTT 1454 ||| ||||| ||||| || | || || || || |||||| | | | || | Sbjct 1172 GGAAC-TGGAATTGGAAACAGACAAGCTCAGATTGATTCCCCAAGAGGT-AGTAATGGAT 1229 Query 1455 CTGTTATGCAGAAATCTCCG-GTAAGATATAGTCATGATCGGCCTCTGCTG-CACATGAC 1512 ||||| | |||||||||||| | | | |||||| ||||||||||||| || ||||| || Sbjct 1230 CTGTTGTACAGAAATCTCCGAGGAGG-TATAGTTATGATCGGCCTCT-CTTACACATAAC 1287 Query 1513 TCCTGGTGCATCGCCTTTACCTTCTTACACTCAATCTCCTCGTGTAAGAT 1562 ||||||||| || ||||| |||||| ||| ||| |||||||||||||||| Sbjct 1288 TCCTGGTGCTTCTCCTTTGCCTTCTCACAATCACTCTCCTCGTGTAAGAT 1337 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65400950665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5