BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14380.1 Length=2436 Score E Sequences producing significant alignments: (Bits) Value Ahg911231 jgi|Araly1|911231|Al_scaffold_0001_1485 3011 0.0 Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1 154 3e-36 > Ahg911231 jgi|Araly1|911231|Al_scaffold_0001_1485 Length=1986 Score = 3011 bits (1630), Expect = 0.0 Identities = 1884/2004 (94%), Gaps = 27/2004 (1%) Strand=Plus/Plus Query 173 ATGGGAAAGACTCCTGGTAAATGGATCAAGACTTTGCTTCTCGGGAAGAAGTCGCCTAAG 232 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1 ATGGGAAAGACTCCTGGTAAATGGATCAAGACTTTGCTTCTCGGGAAGAAGTCCCCCAAG 60 Query 233 TCGAATTCGGATAACCGAAGCCAGAAACTGAAATCTGCTAAGAAAGAAGAGCTGGTGGAA 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 TCGAATTCGGATAACCGAAGCCAGAAACTGAAATCTGCTAAGAAAGAAGAGCTGGTGGCA 120 Query 293 TCGGTGACAGAAGATTTGTCAAACTTAACAGTTGATCCTCCGGTGGTTTCATCACAACCA 352 ||||||||||||||||| |||||| |||| ||||||||||| || ||||||||||| ||| Sbjct 121 TCGGTGACAGAAGATTTTTCAAACGTAACTGTTGATCCTCCAGTCGTTTCATCACAGCCA 180 Query 353 GTTCCAGCTTCTACTGCTCAAAATGTGGTTTCTCCAATCAATGGTGATGAGTCCAAGGAT 412 ||||||||||||||||||||| |||||||||||||| |||||| |||||||| |||||| Sbjct 181 GTTCCAGCTTCTACTGCTCAAGATGTGGTTTCTCCAGTCAATGACGATGAGTCGAAGGAT 240 Query 413 AATCTCGAGTCAAGGAATGACTTGGGAGAAGTCGAGCTTGAACAAGCTGCAATTAAGGTT 472 | |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 241 ACTCTCGAGTCAAGGAATGAATTGGGAGAACTCGAGCTTGAACAAGCTGCAATTAAGGTT 300 Query 473 CAAGCTACCTTCAGAGCTCATCAGGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATC 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CAAGCTACCTTCAGAGCTCATCAGGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATC 360 Query 533 AGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCA 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCA 420 Query 593 TGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCA 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCA 480 Query 653 GATATTGCGATTCAGTTTCAGAAAAAACATATGGAAGCAAGTGATTCAGAAGTTTTGCAA 712 || | || |||||| |||||||||| || | ||||||||||||||||||| | ||||||| Sbjct 481 GACAATGGGATTCAATTTCAGAAAACACTTTTGGAAGCAAGTGATTCAGAGGCTTTGCAA 540 Query 713 TCGAGCA-C--GTGTAGTTGGATGGATAATCCCACAAAGTTCGTCTTTGTTGATAAGCTT 769 | ||||| | ||||||||||||||||| |||||||||||||||| | ||||| |||||| Sbjct 541 TTGAGCAGCACGTGTAGTTGGATGGATACTCCCACAAAGTTCGTCCTCGTTGAGAAGCTT 600 Query 770 CTAGCTTCTTCACCAACTGCATTGCCTCTGAAGATCCAGTATGGTCCTGAGGAACCTAAC 829 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 601 CTAGCTTCTTCACCAACTGCATTGCCTCTGAAGATCCAATATGGTCCTGAGGAACCTAAC 660 Query 830 TCAGCCAAGGTTTGGCTTGAACGCTGGACACAATTACAAGTTTGGTCTTCTGGTTCACGA 889 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TCAGCCAAGGTTTGGCTTGAACGCTGGACACAATTACAAGTTTGGTCTTCTGGTTCACGA 720 Query 890 GTACCTAGGATTGAGATTCCAAAATCTCAGTCAAAGAAGCGAAACTACCAAGCAGTGGTT 949 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 721 GTACCTAGGATTGAGATTCCAAAATCTCAGTCAAAGAAGCGAAACTATCAAGCGGTGGTT 780 Query 950 GAAGCAGAAAAGAAAAGGCCAAAGCGAAGTATCAAGAAACCATCTGGCACAACTAGTGGA 1009 ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 781 GAAGCAGAAAAGACAAGGCCAAAGCGAGGTATCAAGAAACCATCCGGCACAACTAGTGGA 840 Query 1010 ACTGGCCCTAGCCGTTTTACAGCTGAAAGAAATAAACCTAAACGAAATGTGAGGAAGGCT 1069 |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 841 ACTGGCTCTAGCCGTTTTACAGCTGAAAGTAGTAAACCTAAACGAAATGTGAGGAAGGCT 900 Query 1070 TCCACGCTTAGTAAAGATCCCCTGAGAAATGAGAGTGACAAAGCAAATCACAATTCGAGA 1129 ||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| Sbjct 901 TCCACGCTTAGTAAAGATCCCCTGAGAAATGAGAGTGGCAAAGCAAAGCCCAATTCGAGA 960 Query 1130 AAAAGTAGAAGCGGCTCAAAGGAGGGGTCGCCTTTGGAGATTAAAGATGAGAAGCCCAGT 1189 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 961 AAAAGTAGAAGCGGCTCAAAGGAGGGGTCTCCTTTGGAGATTAAAGACGAGAAGCCCAGT 1020 Query 1190 CCTAGTCTCAAAAGGTCTTCTCTTTCGAACGGGTCAAAGAAAGCCACCCTTAGATCTGCT 1249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CCTAGTCTCAAAAGGTCTTCTCTTTCGAACGGGTCAAAGAAAGCCACCCTTAGATCTGCT 1080 Query 1250 GAGAAGAAGAAGAAAGATATTCCAGATTCTTCTGTGCAAATACAGCCTGAAGGGAAAGTT 1309 |||||||| |||||||| | | |||||||| ||||| ||| |||||||||||||||| Sbjct 1081 GAGAAGAAAAAGAAAGAAACTGCAGATTCT---GTGCAGATAGAGCCTGAAGGGAAAGTA 1137 Query 1310 TCAGAGAATGTTCTTGAAGGAGGAGACAATATTGAGTTTGCTGAAAAGGAGAAAGATACT 1369 |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 1138 TCAGTGAATGTTCTTGAAGGAGGAGACAGTATTGAGTTTGCTGAAAAGAAGAAAGATACT 1197 Query 1370 ACAGATTCTGTGCAGATAGAGTCTGAAGGGA-AGGTTTCAGGGAATGTTCTTGAAGGAGG 1428 |||||||||||||||||||| ||||||||| || | ||| |||||||||||||||||| Sbjct 1198 GCAGATTCTGTGCAGATAGAGCCTGAAGGGATAG-TGACAGAGAATGTTCTTGAAGGAGG 1256 Query 1429 AGAAGGAGAAAATATTGTGTTTACTGAAAAGGAGAAAGATACTGCAGATCCTGTGCAGAT 1488 ||| || || || |||| ||||||||||| |||||||||||||| |||||||||| Sbjct 1257 AGAC--AG----TACTGAGTTTGCTGAAAAGGAGGAAGATACTGCAGATTCTGTGCAGAT 1310 Query 1489 AGAGCCTGAAAGGAAGGTTCTTGAAGAAGGAGACAATATCGAGTCTTCTGGAAAAGAAAA 1548 |||||||||| ||||||||||||||| || | | |||||||||||||||||||||||||| Sbjct 1311 AGAGCCTGAAGGGAAGGTTCTTGAAGGAG-A-A-AATATCGAGTCTTCTGGAAAAGAAAA 1367 Query 1549 AGATACTGGAGATTCTGTGCAGATAGAGTCTGAAGGAAAGGTTCTTGAAGGAGGAGACAA 1608 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1368 AGATACTGCAGATTCTGTGCAGATAGAGTCTGAAGGAAAGGTTCTTGAAGGAGAAGACAA 1427 Query 1609 TATTGAATTTGGTGAAAAAGAGAAAGATAAAGCTGATGCAGTTCCCATCGAATTTGATAT 1668 |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 1428 TATTGAGTTTGGTGAAAAAGAGAAAGATACCGCTGATGCAGTTCCCATCGAATTTGATGT 1487 Query 1669 TGTAAAAGATGAGAAGTCACCAGTTTTGGATAGGAC-GGAGGAAGATGAACTGAAAACTG 1727 ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| Sbjct 1488 TGTAAAAGATGAGAAGTCACCAGTTTTGGATAG-ACCGGAGGAAGATGAACCCAAAACTG 1546 Query 1728 CAGAGACCAGTGACAAAGCCGAAGCCCTTAAATG-TGCAGATGTGAAGGTAAGCTCTGAG 1786 |||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||| Sbjct 1547 CAGAGACCAGTGACAAAGGCGAAGAACTTAAATGCT-CAGATGTGAAGGTAAGCTCTGAG 1605 Query 1787 AATGGTAATGTTGGTTCTGATAACACAAAG-CAAAGTGAAAAACGAGCATTGCTGCCTGC 1845 || ||||||||||||||||||||||||||| ||| |||||| |||| |||||||| ||| Sbjct 1606 AACGGTAATGTTGGTTCTGATAACACAAAGTCAA-GTGAAAGACGATCATTGCTGACTGG 1664 Query 1846 AAATATTGACAAA-CAAGATGATGGGCTTACCCTTAGCGGACGGAAAATCCCCAGCTACA 1904 ||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1665 AAATATTGA-AAATCAAGATGATGGGCTTACACATAGCGGACGGAAAATCCCCAGCTACA 1723 Query 1905 TGGCCCCGACTGCATCTGCAAAGGCCAGAGTCAAAGGAGAAGCCTCTCCGAGGTTTG-CC 1963 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1724 TGGCCCCGACTGCATCTGCAAAGGCCAGAGTCAAAGGAGAAGCCTCTCCGAGGTT-GACC 1782 Query 1964 CAAGCGAAGACTGAGATAAATGGGGCATTACGGCGCCATTCACTGCCTTCTCCAGCCAAT 2023 |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1783 CAAGTGAAGACTGAGATAAATGGGGCATTGCGGCGCCATTCGCTGCCTTCTCCAGCCAAT 1842 Query 2024 GGTAAGCTGAGTACTACTACTATGTCTCCAAGGGCTCAAAAACTTCTCTTAGCCTCTGCC 2083 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| Sbjct 1843 GGTAAGCTGAGTACTACTACTATGTCTCCAAGGGCTCACAAACTTCTCCTAGCCTCAGCC 1902 Query 2084 AAAGGATCTATGAACGGCGACAAATCTTTTACTTCTTCCAAGGACATAACTCACAAGTCA 2143 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1903 AAAGGATCTATGAACGGCGACAAATCTTTTACTTCTTCCAAGGACATAAGTCACAAGTCA 1962 Query 2144 ACCAGAACCGACTGGAAACGGTGA 2167 |||||||||||||||||||||||| Sbjct 1963 ACCAGAACCGACTGGAAACGGTGA 1986 Score = 99.0 bits (53), Expect = 1e-19 Identities = 81/93 (87%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 1315 GAATGTTCTTGAAGGAGGAGACAATATTGAGT-TTGCT-GAAAAGGAGAAAGATACTACA 1372 ||| |||||||||||| || | ||||| |||| || || ||||| || ||||||||| || Sbjct 1323 GAAGGTTCTTGAAGGA-GA-A-AATATCGAGTCTT-CTGGAAAA-GAAAAAGATACTGCA 1377 Query 1373 GATTCTGTGCAGATAGAGTCTGAAGGGAAGGTT 1405 |||||||||||||||||||||||||| |||||| Sbjct 1378 GATTCTGTGCAGATAGAGTCTGAAGGAAAGGTT 1410 > Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1 Length=1747 Score = 154 bits (83), Expect = 3e-36 Identities = 106/117 (91%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 2312 CATATCTTGCTTCAATTTACTCTGATATGTTTGAAGACACAAAATAG-TTGAAGTAAATA 2370 ||||| |||||||||||||||||||||||||||||||| ||||| || || ||||||||| Sbjct 1747 CATATGTTGCTTCAATTTACTCTGATATGTTTGAAGACTCAAAA-AGGTTTAAGTAAATA 1689 Query 2371 GTTAATCTCTGTATAAACCTTTGCAATCACTCCTCTCTAATTACACAGACAAGCCTG 2427 ||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| |||| Sbjct 1688 GTTCATCTCTGTACAAACCTTTGCATTCACTCCTCTCCGATTACACAGACAAACCTG 1632 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91797490450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5