BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14380.1
Length=2436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911231 jgi|Araly1|911231|Al_scaffold_0001_1485 3011 0.0
Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1 154 3e-36
> Ahg911231 jgi|Araly1|911231|Al_scaffold_0001_1485
Length=1986
Score = 3011 bits (1630), Expect = 0.0
Identities = 1884/2004 (94%), Gaps = 27/2004 (1%)
Strand=Plus/Plus
Query 173 ATGGGAAAGACTCCTGGTAAATGGATCAAGACTTTGCTTCTCGGGAAGAAGTCGCCTAAG 232
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 ATGGGAAAGACTCCTGGTAAATGGATCAAGACTTTGCTTCTCGGGAAGAAGTCCCCCAAG 60
Query 233 TCGAATTCGGATAACCGAAGCCAGAAACTGAAATCTGCTAAGAAAGAAGAGCTGGTGGAA 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 TCGAATTCGGATAACCGAAGCCAGAAACTGAAATCTGCTAAGAAAGAAGAGCTGGTGGCA 120
Query 293 TCGGTGACAGAAGATTTGTCAAACTTAACAGTTGATCCTCCGGTGGTTTCATCACAACCA 352
||||||||||||||||| |||||| |||| ||||||||||| || ||||||||||| |||
Sbjct 121 TCGGTGACAGAAGATTTTTCAAACGTAACTGTTGATCCTCCAGTCGTTTCATCACAGCCA 180
Query 353 GTTCCAGCTTCTACTGCTCAAAATGTGGTTTCTCCAATCAATGGTGATGAGTCCAAGGAT 412
||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||
Sbjct 181 GTTCCAGCTTCTACTGCTCAAGATGTGGTTTCTCCAGTCAATGACGATGAGTCGAAGGAT 240
Query 413 AATCTCGAGTCAAGGAATGACTTGGGAGAAGTCGAGCTTGAACAAGCTGCAATTAAGGTT 472
| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 241 ACTCTCGAGTCAAGGAATGAATTGGGAGAACTCGAGCTTGAACAAGCTGCAATTAAGGTT 300
Query 473 CAAGCTACCTTCAGAGCTCATCAGGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAGCTACCTTCAGAGCTCATCAGGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATC 360
Query 533 AGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCA 420
Query 593 TGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCA 480
Query 653 GATATTGCGATTCAGTTTCAGAAAAAACATATGGAAGCAAGTGATTCAGAAGTTTTGCAA 712
|| | || |||||| |||||||||| || | ||||||||||||||||||| | |||||||
Sbjct 481 GACAATGGGATTCAATTTCAGAAAACACTTTTGGAAGCAAGTGATTCAGAGGCTTTGCAA 540
Query 713 TCGAGCA-C--GTGTAGTTGGATGGATAATCCCACAAAGTTCGTCTTTGTTGATAAGCTT 769
| ||||| | ||||||||||||||||| |||||||||||||||| | ||||| ||||||
Sbjct 541 TTGAGCAGCACGTGTAGTTGGATGGATACTCCCACAAAGTTCGTCCTCGTTGAGAAGCTT 600
Query 770 CTAGCTTCTTCACCAACTGCATTGCCTCTGAAGATCCAGTATGGTCCTGAGGAACCTAAC 829
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 CTAGCTTCTTCACCAACTGCATTGCCTCTGAAGATCCAATATGGTCCTGAGGAACCTAAC 660
Query 830 TCAGCCAAGGTTTGGCTTGAACGCTGGACACAATTACAAGTTTGGTCTTCTGGTTCACGA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCAGCCAAGGTTTGGCTTGAACGCTGGACACAATTACAAGTTTGGTCTTCTGGTTCACGA 720
Query 890 GTACCTAGGATTGAGATTCCAAAATCTCAGTCAAAGAAGCGAAACTACCAAGCAGTGGTT 949
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 721 GTACCTAGGATTGAGATTCCAAAATCTCAGTCAAAGAAGCGAAACTATCAAGCGGTGGTT 780
Query 950 GAAGCAGAAAAGAAAAGGCCAAAGCGAAGTATCAAGAAACCATCTGGCACAACTAGTGGA 1009
||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 781 GAAGCAGAAAAGACAAGGCCAAAGCGAGGTATCAAGAAACCATCCGGCACAACTAGTGGA 840
Query 1010 ACTGGCCCTAGCCGTTTTACAGCTGAAAGAAATAAACCTAAACGAAATGTGAGGAAGGCT 1069
|||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 841 ACTGGCTCTAGCCGTTTTACAGCTGAAAGTAGTAAACCTAAACGAAATGTGAGGAAGGCT 900
Query 1070 TCCACGCTTAGTAAAGATCCCCTGAGAAATGAGAGTGACAAAGCAAATCACAATTCGAGA 1129
||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 901 TCCACGCTTAGTAAAGATCCCCTGAGAAATGAGAGTGGCAAAGCAAAGCCCAATTCGAGA 960
Query 1130 AAAAGTAGAAGCGGCTCAAAGGAGGGGTCGCCTTTGGAGATTAAAGATGAGAAGCCCAGT 1189
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 961 AAAAGTAGAAGCGGCTCAAAGGAGGGGTCTCCTTTGGAGATTAAAGACGAGAAGCCCAGT 1020
Query 1190 CCTAGTCTCAAAAGGTCTTCTCTTTCGAACGGGTCAAAGAAAGCCACCCTTAGATCTGCT 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCTAGTCTCAAAAGGTCTTCTCTTTCGAACGGGTCAAAGAAAGCCACCCTTAGATCTGCT 1080
Query 1250 GAGAAGAAGAAGAAAGATATTCCAGATTCTTCTGTGCAAATACAGCCTGAAGGGAAAGTT 1309
|||||||| |||||||| | | |||||||| ||||| ||| ||||||||||||||||
Sbjct 1081 GAGAAGAAAAAGAAAGAAACTGCAGATTCT---GTGCAGATAGAGCCTGAAGGGAAAGTA 1137
Query 1310 TCAGAGAATGTTCTTGAAGGAGGAGACAATATTGAGTTTGCTGAAAAGGAGAAAGATACT 1369
|||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1138 TCAGTGAATGTTCTTGAAGGAGGAGACAGTATTGAGTTTGCTGAAAAGAAGAAAGATACT 1197
Query 1370 ACAGATTCTGTGCAGATAGAGTCTGAAGGGA-AGGTTTCAGGGAATGTTCTTGAAGGAGG 1428
|||||||||||||||||||| ||||||||| || | ||| ||||||||||||||||||
Sbjct 1198 GCAGATTCTGTGCAGATAGAGCCTGAAGGGATAG-TGACAGAGAATGTTCTTGAAGGAGG 1256
Query 1429 AGAAGGAGAAAATATTGTGTTTACTGAAAAGGAGAAAGATACTGCAGATCCTGTGCAGAT 1488
||| || || || |||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1257 AGAC--AG----TACTGAGTTTGCTGAAAAGGAGGAAGATACTGCAGATTCTGTGCAGAT 1310
Query 1489 AGAGCCTGAAAGGAAGGTTCTTGAAGAAGGAGACAATATCGAGTCTTCTGGAAAAGAAAA 1548
|||||||||| ||||||||||||||| || | | ||||||||||||||||||||||||||
Sbjct 1311 AGAGCCTGAAGGGAAGGTTCTTGAAGGAG-A-A-AATATCGAGTCTTCTGGAAAAGAAAA 1367
Query 1549 AGATACTGGAGATTCTGTGCAGATAGAGTCTGAAGGAAAGGTTCTTGAAGGAGGAGACAA 1608
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1368 AGATACTGCAGATTCTGTGCAGATAGAGTCTGAAGGAAAGGTTCTTGAAGGAGAAGACAA 1427
Query 1609 TATTGAATTTGGTGAAAAAGAGAAAGATAAAGCTGATGCAGTTCCCATCGAATTTGATAT 1668
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1428 TATTGAGTTTGGTGAAAAAGAGAAAGATACCGCTGATGCAGTTCCCATCGAATTTGATGT 1487
Query 1669 TGTAAAAGATGAGAAGTCACCAGTTTTGGATAGGAC-GGAGGAAGATGAACTGAAAACTG 1727
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1488 TGTAAAAGATGAGAAGTCACCAGTTTTGGATAG-ACCGGAGGAAGATGAACCCAAAACTG 1546
Query 1728 CAGAGACCAGTGACAAAGCCGAAGCCCTTAAATG-TGCAGATGTGAAGGTAAGCTCTGAG 1786
|||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||
Sbjct 1547 CAGAGACCAGTGACAAAGGCGAAGAACTTAAATGCT-CAGATGTGAAGGTAAGCTCTGAG 1605
Query 1787 AATGGTAATGTTGGTTCTGATAACACAAAG-CAAAGTGAAAAACGAGCATTGCTGCCTGC 1845
|| ||||||||||||||||||||||||||| ||| |||||| |||| |||||||| |||
Sbjct 1606 AACGGTAATGTTGGTTCTGATAACACAAAGTCAA-GTGAAAGACGATCATTGCTGACTGG 1664
Query 1846 AAATATTGACAAA-CAAGATGATGGGCTTACCCTTAGCGGACGGAAAATCCCCAGCTACA 1904
||||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1665 AAATATTGA-AAATCAAGATGATGGGCTTACACATAGCGGACGGAAAATCCCCAGCTACA 1723
Query 1905 TGGCCCCGACTGCATCTGCAAAGGCCAGAGTCAAAGGAGAAGCCTCTCCGAGGTTTG-CC 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1724 TGGCCCCGACTGCATCTGCAAAGGCCAGAGTCAAAGGAGAAGCCTCTCCGAGGTT-GACC 1782
Query 1964 CAAGCGAAGACTGAGATAAATGGGGCATTACGGCGCCATTCACTGCCTTCTCCAGCCAAT 2023
|||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1783 CAAGTGAAGACTGAGATAAATGGGGCATTGCGGCGCCATTCGCTGCCTTCTCCAGCCAAT 1842
Query 2024 GGTAAGCTGAGTACTACTACTATGTCTCCAAGGGCTCAAAAACTTCTCTTAGCCTCTGCC 2083
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 1843 GGTAAGCTGAGTACTACTACTATGTCTCCAAGGGCTCACAAACTTCTCCTAGCCTCAGCC 1902
Query 2084 AAAGGATCTATGAACGGCGACAAATCTTTTACTTCTTCCAAGGACATAACTCACAAGTCA 2143
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1903 AAAGGATCTATGAACGGCGACAAATCTTTTACTTCTTCCAAGGACATAAGTCACAAGTCA 1962
Query 2144 ACCAGAACCGACTGGAAACGGTGA 2167
||||||||||||||||||||||||
Sbjct 1963 ACCAGAACCGACTGGAAACGGTGA 1986
Score = 99.0 bits (53), Expect = 1e-19
Identities = 81/93 (87%), Gaps = 7/93 (8%)
Strand=Plus/Plus
Query 1315 GAATGTTCTTGAAGGAGGAGACAATATTGAGT-TTGCT-GAAAAGGAGAAAGATACTACA 1372
||| |||||||||||| || | ||||| |||| || || ||||| || ||||||||| ||
Sbjct 1323 GAAGGTTCTTGAAGGA-GA-A-AATATCGAGTCTT-CTGGAAAA-GAAAAAGATACTGCA 1377
Query 1373 GATTCTGTGCAGATAGAGTCTGAAGGGAAGGTT 1405
|||||||||||||||||||||||||| ||||||
Sbjct 1378 GATTCTGTGCAGATAGAGTCTGAAGGAAAGGTT 1410
> Ahg471608 jgi|Araly1|471608|fgenesh2_kg.1__1562__AT1G14370.1
Length=1747
Score = 154 bits (83), Expect = 3e-36
Identities = 106/117 (91%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 2312 CATATCTTGCTTCAATTTACTCTGATATGTTTGAAGACACAAAATAG-TTGAAGTAAATA 2370
||||| |||||||||||||||||||||||||||||||| ||||| || || |||||||||
Sbjct 1747 CATATGTTGCTTCAATTTACTCTGATATGTTTGAAGACTCAAAA-AGGTTTAAGTAAATA 1689
Query 2371 GTTAATCTCTGTATAAACCTTTGCAATCACTCCTCTCTAATTACACAGACAAGCCTG 2427
||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 1688 GTTCATCTCTGTACAAACCTTTGCATTCACTCCTCTCCGATTACACAGACAAACCTG 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91797490450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5