BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14390.1
Length=2244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471612 jgi|Araly1|471612|fgenesh2_kg.1__1566__AT1G14390.1 2712 0.0
Ahg322589 jgi|Araly1|322589|fgenesh1_pm.C_scaffold_5000133 616 3e-175
> Ahg471612 jgi|Araly1|471612|fgenesh2_kg.1__1566__AT1G14390.1
Length=2202
Score = 2712 bits (1468), Expect = 0.0
Identities = 1707/1821 (94%), Gaps = 21/1821 (1%)
Strand=Plus/Plus
Query 1 ATGCATAGTTCCTCTAAAAGCCAGGCcttttctctcac---t-tt-t-cttc-tc-t-tt 51
||||| ||||||||||||||||||||||||| ||| || | || | |||| || | ||
Sbjct 1 ATGCAGAGTTCCTCTAAAAGCCAGGCCTTTTTTCTTACTGTTCTTCTCCTTCTTCTTCTT 60
Query 52 ctttttcttctGCCATC-AGTCTCAGAATCACAGCTAATATCAAGTGAATCAAGAACTCT 110
||| ||||||||||| | | |||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CTTCTTCTTCTGCCA-CTACTCTCAGAATCACAGCTTATATCAAGTGAATCAAGAACTCT 119
Query 111 ATTAGAAATCCAAAAGCATTTACAATATCCACCAACTCTTCGATCATGGAGCAACTGGAC 170
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 120 ACTAGAAATCCAAAAGCATTTACAATATCCACCAATTCTTCGATCATGGAGCAACCGGAC 179
Query 171 CAATTTCTGCTACCTCCCTTCTTCTCCTTCTTTCAAAATCCTCTGTTTCAATGGTCATGT 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAATTTCTGCTACCTCCCTTCTTCTCCTTCTTTCAAAATCCTCTGTTTCAATGGTCATGT 239
Query 231 AACTGAATTAACCGTCACGGGGAACAGAACCGTTAAGCTCCCCGGAAGAT-TCTCAAGCG 289
||| |||||||||||||| |||||||||||||| |||||||| ||||||| | || ||||
Sbjct 240 AACCGAATTAACCGTCACTGGGAACAGAACCGTGAAGCTCCCTGGAAGATAT-TCCAGCG 298
Query 290 ACTCACTATTCACTGTTCTTACAAAACTCTCAAACTTAAAGACATTGTCTCTGGTCTCTC 349
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACTCACTCTTCACTGTTCTTACAAAACTCTCAAACTTAAAGACATTGTCTCTGGTCTCTC 358
Query 350 TTGGCATCTCTGGTCCTCTCCCTTCACAGATCATCAGGTTATCTTCATCTCTTCAATCTC 409
| ||||||||||||||||||||| || ||||||||||||||||||||||||| || ||||
Sbjct 359 TCGGCATCTCTGGTCCTCTCCCTACAAAGATCATCAGGTTATCTTCATCTCTCCAGTCTC 418
Query 410 TGAATCTCAGTTCTAATTTCATCTCTGGGAATATTCCTAAAGAGATCTCGTCGTTGAAGA 469
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 419 TGAATCTCAGTTCTAATTTCATATCGGGGAAAATTCCTAAAGAGATCTCGTCGTTGAAGA 478
Query 470 ATC-TGAGAAGTCTTGTTCTAGCGAACAATTTGTTTAACGGAAGTGTTCCTGATCTCAGA 528
| | |||||||||||||||| || |||||| |||| || |||||||||||||||||||||
Sbjct 479 A-CTTGAGAAGTCTTGTTCTTGCAAACAATCTGTTCAATGGAAGTGTTCCTGATCTCAGA 537
Query 529 GGATTGTCGAATCTTCAAGAGCTGAATTTAGGCGGTAATAAACTCGGTCCTGAAGTTGTT 588
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 GGATTGTCGAATCTCCAAGAGCTGAATTTAGGCGGTAATAAACTCGGTCCTGAAGTTCTT 597
Query 589 CCTTCACTTGCAAGTAACTTGATTACTATTTCATTGAAGAACAACTCTTTTGGATCAAAG 648
||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 598 CCTTCACTTGCAAGTAACTTGATCACCGTTTCATTGAAGAACAACTCTTTTGGATCCAAG 657
Query 649 ATTCCAGAACAGATCAAGAAGCTGAATAAGCTTCAGAGCTTAGATCTTTCCTCCAACAAG 708
||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||
Sbjct 658 ATTCCAGAACAGATCAAGAAGCTGAGTAAGCTTCAAAACTTGGATCTTTCCTCCAACAAG 717
Query 709 TTCACTGGCTCAATCCCAAGATTCCTGCTTTCGCTTCCTTCGCTTCAGAATCTAAGTTTA 768
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 TTCACTGGGTCAATCCCAAGATTCCTGTTTTCGCTTCCTTCGCTTCAGAATCTAAGTTTG 777
Query 769 GCACAAAACTTGCTGAGTGGATCACTTCCAAATTCATCGTTGTGCAACTCCAAGCTTAGA 828
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 778 GCACAAAACTTGCTGAGTGGATCACTTCCAAATTCATCGTTGTGCAGCTCCAAGCTTAGA 837
Query 829 ATTTTAGATGTTTCTCGGAATCTTCTGACTGGGAAGCTTCCATCTTGCTTCTCTTCCAAG 888
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 ATTTTAGATGTTTCTCGGAATCTTCTGACTGGGAAGCTTCCATCTTGCTTCTTTTCCAAG 897
Query 889 AAACAGACAGTACTGCTCTTCACATTCAATTGCTTGTCTATAAATGGTTCTCCTTCTGCA 948
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 AAACAGACAG---TGCTCTTCACATTCAATTGCTTGTCTATAAAAGGTTCTCCTTCTGCT 954
Query 949 AAGTATCAGCGTCCAGTTACCTTCTGTGAAAACGAAGCAAAGCAAGCAGTAGCTGCTGTG 1008
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 955 AAGTATCAACGTCCAGTTACCTTCTGTGAAAACGAGGCAAAGCAAGCAGTAGCTGCTGTG 1014
Query 1009 AAGTCTGACACTAAAGATAAAGAAAGGAAAGAAGAAGATACAGGAATCGAACTTGGATTG 1068
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1015 AAGTCTGACACTAAAGATCAAGAAAGGAAAAAAGAAGATACAGGAATCGAACTCGGATTG 1074
Query 1069 GTGATTGGCATTATCATCGGTGTGATCCTCGTTTCAGCGGTTTTAGCTGGCTTGGTTTTG 1128
|||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct 1075 GTGATTGGTATTATCATCGGTGTGGTCCTCGTTTCAGCGGTTTTGGCTGGCTTGATTCTG 1134
Query 1129 GTTAGGATGAGAAAATCAAGATCAAAAGAAGAGCCTTTGGAAGCAAACAACGTCGATCAG 1188
|||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||| ||
Sbjct 1135 TTTAGGATGAGAAAATCAAAATCAAAGGAAGAGCTTTTTGAAGCAAACAACGTCGATAAG 1194
Query 1189 GTCACTGTTTGCAGCAACACCACCAGGTCCACCACATCAAAGACAGTACCAGATCTAAGA 1248
| | ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1195 G--A-GGTTCGCAGCAACACCACCAGGTCCACTACATCAAAGACAGTACCAGATCCAAGA 1251
Query 1249 CGTGTACCGCAAACCATGAGATCCGCGGTGATTGGACTATCACCATACCGAGTTTTCTCT 1308
|| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||
Sbjct 1252 CGCGTACCGCAAACCATGAGATCCGCGGTGATTGGACTATCACCCTACCAAATTTTCTCG 1311
Query 1309 TTGGAGGAACTGGAAGAAGCAACCAACAATTTTGATGCAGAGAATCTCTGTGGAGAACAG 1368
|||||||||||||||||||| || ||||| |||||||||| |||||||||||||||||||
Sbjct 1312 TTGGAGGAACTGGAAGAAGCCACAAACAACTTTGATGCAGCGAATCTCTGTGGAGAACAG 1371
Query 1369 CTGTACAAAGGTTGTCTTAGAGAAGGCATAGCAGTGACAGTGAGGTGTATTAAGCTGAAA 1428
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TTGTATAAAGGTTGTCTTAGAGAAGGCATAGCAGTGACAGTGAGGTGTATTAAGCTGAAA 1431
Query 1429 CAGAAGAATTCAACACAGAATTTAGCTCAACAAATGGAAGTTTTATCAAAGCTAAGGCAT 1488
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1432 CAGAAGAATTCAACACAGAATTTGGCTCAACAAATGGAAGTTTTATCAACGCTAAGGCAT 1491
Query 1489 ATGCATTTGGTCAGTGTTCTTGGACACTGCATTGGTACTTATCAAGATCATCATCCTTAT 1548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1492 ATGCATTTGGTCAGTGTTCTTGGACACTGCATTGGTACTTATCAAGATCATCATCCATAT 1551
Query 1549 GCCGGAAGCACTATTTTCATTGTCCAAGAATATATCTCTAACGGGTCTTTGAGGGATTAC 1608
||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1552 GCCGGGAGCACCATATTCATAGTCCAAGAATACATCTCTAACGGGTCTTTGAGGGATTAC 1611
Query 1609 CTCACCGATTGGAGAAAGAAAGAGGTGTTGAAATGGCCTCAGAGAATGTCGATAGCGATT 1668
|||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1612 CTCATCGACTGGAGAAAGAAAGAGGTATTAAAATGGCCTCAGAGAATGTCGATAGCGATT 1671
Query 1669 GGAGTTGCTCGAGGAATACAGTTCTTGCACACAGGAGTGGCACCAGGAATATTTGGGAAC 1728
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1672 GGAGTTGCTCGAGGAATTCAGTTCTTGCACACAGGAGTGGCACCAGGAATCTTTGGGAAT 1731
Query 1729 AATTTGGAAATAGAGAATGTTTTACTTGATGAAACACTCACTGTAAAACTCAGTGGTTAT 1788
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 AATTTGGAGATAGAGAATGTTTTACTTGATGAAACACTCACTGTAAAACTCAGTGGTTAT 1791
Query 1789 AGTATTCCTTTACCATCCAAG 1809
| |||||||||||||||||||
Sbjct 1792 ACTATTCCTTTACCATCCAAG 1812
Score = 597 bits (323), Expect = 1e-169
Identities = 351/365 (96%), Gaps = 0/365 (0%)
Strand=Plus/Plus
Query 1874 CGGAGAGCCCTAGTAATGAAGATGGAGAGAAAGAAGATGTGTACCAGTTTGGAGTGATAC 1933
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1832 CGGAGAGCCCTAGTAATGATGATGGAGAGAAGGAAGATGTGTACCAGTTTGGAGTGATAC 1891
Query 1934 TAATTCAGATCATCACAGGCAAAGTAATAGCAGCTGCATCTTCAGAGTTGGGGAGCTTGA 1993
|| ||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1892 TACTTCAGATCATCACAGGCAAAGTATTGGCGGCTGCATCTTCAGAGTTGGGGAGCTTGA 1951
Query 1994 AGCTTCAGCTGGAGAACAGTTTGAGAGACGAACCATCGGTGTTGCGTAGCTTGGCAGATC 2053
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1952 AGCTTCAGCTGGAGAACAGTTTGAGAGACGAACCATTGGTGTTGCGTAGCTTGGCAGATC 2011
Query 2054 CGTGTGTGAGAGGAACATATGCATACGAGTCATTGAGAACCACAGTAGAGTTTGCCATTA 2113
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2012 CGTGTGTGAGAGGAACATATGCATATGAGTCATTGAGAACCACAGTAGAGTTTGCCATTA 2071
Query 2114 ACTGTCTTTGTGAAGATCAGAGGAAGCGGCCATCGATAGAGGATGTTGTATGGAATCTGC 2173
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2072 ACTGTCTTTGTGAAGATCAGAGGAATCGGCCATCGATAGAGGATGTTGTATGGAATCTGC 2131
Query 2174 AGTACACAATTCAAGTGCAACAAGGATGGACAAGCAGTGAGAACCTCGGGCTTGGTGGTT 2233
||||||||||||||||||| || |||||||||||||||| |||||| ||| |||||||||
Sbjct 2132 AGTACACAATTCAAGTGCAGCAGGGATGGACAAGCAGTGGGAACCTTGGGATTGGTGGTT 2191
Query 2234 CAGAA 2238
|||||
Sbjct 2192 CAGAA 2196
> Ahg322589 jgi|Araly1|322589|fgenesh1_pm.C_scaffold_5000133
Length=2265
Score = 616 bits (333), Expect = 3e-175
Identities = 930/1203 (77%), Gaps = 102/1203 (8%)
Strand=Plus/Plus
Query 28 tttt-ctctcacttttcttc-tctttctttttcttctGCCATC-AGTCTCAGAATCACAG 84
|||| || ||||||| |||| || ||||| ||||||| ||| | | || |||| || |||
Sbjct 28 TTTTCCT-TCACTTTCCTTCTTC-TTCTTCTTCTTCTTCCA-CTACTCACAGACTCTCAG 84
Query 85 CTAA-TATCAAGTGAATCA-AGAACTC-TATTAGAAATCCAAAAGCATTTACAATATCCA 141
|||| | |||||||||||| | ||||| | || |||||||| ||||| |||||||||||
Sbjct 85 CTAACT-TCAAGTGAATCACA-AACTCTTCTT-GAAATCCAGAAGCAACTACAATATCCA 141
Query 142 CCA-ACTCTTCGATCATGGAGC--A-ACTGGACCAATTTCTGCTACCTCCCTTCTTCTCC 197
|| ||||| |||||||| | | || |||||||||||| || | | | ||||| |
Sbjct 142 -CAGGTTCTTCAATCATGGA-CTGATAC--AACCAATTTCTGCCACATTCGTCCTTCTTC 197
Query 198 TTCTTTCAA-AATCCTCTGTTTCAATGGTCATGTAACTGAATTAACCGTCACGGGGAACA 256
||| || || |||| |||| ||||||||||| ||||| || ||||| ||||| |||||||
Sbjct 198 TTCCTT-AACAATCATCTGCTTCAATGGTCACGTAACAGAGTTAACTGTCACCGGGAACA 256
Query 257 GAACC-GTTAAGCTCCCCGGAAGATTCTCAAGCGACTCACTATTCACTGTTCTTACAAAA 315
||||| | ||||||| | ||||| || || | ||| || || ||| |||||||| ||
Sbjct 257 GAACCAG-TAAGCTCTCTGGAAG-TTTTC-ATAAACT--CT-TT-ACTCTTCTTACACAA 309
Query 316 CTCTCAAACTTAAAGACATTGTCTCTGGTCTCTCTTGGCATCTCTGGTCCTCTCCCTTC- 374
|| |||| |||||| || |||||||| ||||||||| || |||||| ||||| || |
Sbjct 310 CTATCAAGCTTAAACACTTTGTCTCTTACCTCTCTTGGAATTTCTGGTTCTCTCTCTCCT 369
Query 375 ACAGATCAT---CAGGTTATCTTCATCTCTTCAATCTCTGAATCTCAGTTCTAATTTCAT 431
| ||||||| || |||||| | |||||| |||||| ||||| || |||||||||||
Sbjct 370 A-AGATCATCACCAAGTTATCACCTTCTCTTGTATCTCTCAATCTAAGCTCTAATTTCAT 428
Query 432 CTCTGGGAATATTCCTA-AAGAGA-TCTCGTCGTTGAAGAATCTGAGAAGTCTTGTTCTA 489
||| ||||| | ||| | |||||| | | ||| ||||||||||||| ||| |||||| ||
Sbjct 429 CTCCGGGAAGA-TCCCAGAAGAGATTGT-GTCTTTGAAGAATCTGAAAAGCCTTGTTTTA 486
Query 490 GCGA-ACAATTTGTT-TAACGGAAGTGT-TC--CTGATCTCAGAGGATTGTCGAATCTTC 544
| | ||||| |||| | || ||| || ||||||||||||||||||||||||||
Sbjct 487 AC-AGACAATATGTTCT-GGGGTTTTGTCTCTGATGATCTCAGAGGATTGTCGAATCTTC 544
Query 545 AAGAGCTGAATTTAGGCGGTAATAAACTCGGTCCTGAAGTTGTTCCTTCACTTGCAAGTA 604
|||||||| |||| || |||||||||||||||||| ||||| |||||||| ||||||
Sbjct 545 AAGAGCTGGATTTGGGAGGTAATAAACTCGGTCCTAAAGTT---CCTTCACTACCAAGTA 601
Query 605 ACTTGATTACTATTTCATTGAAGAACAACTCTTTTGGATCAAAGATTCCAGAACAGATCA 664
||||||| ||| ||||||||||||||||||||||| |||| | |||||||||||| ||||
Sbjct 602 ACTTGATCACTGTTTCATTGAAGAACAACTCTTTTAGATCCAGGATTCCAGAACATATCA 661
Query 665 AGAAGCTG-AATAAGCTTCAGAGCTTAGATCTTTCCTCCAAC-AAGTTCACTGGCTCAAT 722
||||| || ||||||||||| || ||||| ||||| |||||| || ||||| || || ||
Sbjct 662 AGAAG-TGGAATAAGCTTCAAAGTTTAGACCTTTCTTCCAACGAA-TTCACCGGGTCGAT 719
Query 723 CCCA-AGATTCCTGCTTTCGCTTCCTTCGCTTCAGAAT-CTAAGTTTAGCA-CAAAACT- 778
||| || ||| || ||||||||||||| ||||| ||| || ||||| | | || || |
Sbjct 720 TCCAGAGTTTC-TGTTTTCGCTTCCTTCTCTTCA-AATTCTCAGTTTGG-ATCAGAA-TA 775
Query 779 TGCTGAGTGGATCACTTCCAAATTCATCGTTGT-GCAACTCCAAGCTTAGAATTTTAGAT 837
|| | || || |||||||||||||| || ||| || ||| ||| ||| || ||||||
Sbjct 776 TGTTAAGCGGGTCACTTCCAAATTCTTC-TTGCAGCTCCTCAAAGATTATAACTTTAGAC 834
Query 838 GTTTCTCGGAATCTTCTGACTGGGAAGCTTCCATCTTGCTTCTCTTCCAAGAAA--CAGA 895
||||||| |||||| | || || || ||||| ||||||| | |||| |||| ||||
Sbjct 835 GTTTCTCACAATCTTTTAACCGGAAAACTTCCTTCTTGCTACACTTCAAAGAGTTTCAGA 894
Query 896 ---CAGTAC--TGCTCTTCACATTCAATTGCTTGTCTATAAATGGTTCTCCTT-CTGCAA 949
||| || |||| ||| ||||||||||||||||| | ||| ||||| | || |
Sbjct 895 AATCAG-ACAGTGCTTTTCTCATTCAATTGCTTGTCTTTGGTTGGCACTCCTAAC-GCGA 952
Query 950 AGTATCAGCGTCCAG-TTACCTTCTGTGAAAACGAAGCAAAGCAA-GCAGTAGCTGCTGT 1007
||||||||||||| | || | |||||| ||||| |||||| |||| ||| |||||| ||
Sbjct 953 AGTATCAGCGTCC-GCTTTCTTTCTGTCAAAACCAAGCAA-GCAAAGCAATAGCTG-TG- 1008
Query 1008 GAAGTCTGAC-ACTAAAGATAAAGAAAGGAAAGAAGAAGATACAGGAATCGAACTTGGAT 1066
||| ||| | || || | |||||| | ||||| | | || |||| |||| || |
Sbjct 1009 GAAC-CTGTCCAC-AAGGTTAAAGA--G-AAAGATTCTGC-A-AG-AATCAAACTCGGTT 1060
Query 1067 TGGTGATTG-GCATTATCATCGGTGTGATCCTCGTTTCAGCGGTTTTAG--CTGGCTTGG 1123
| |||||| | || ||||||||||||||| || || |||| |||| | ||| ||||
Sbjct 1061 TAGTGATTCTG-ATAATCATCGGTGTGATCATCCTTGCAGCAATTTTGGTTCTG--TTGG 1117
Query 1124 TTTTGGTTAGGA-TGA---GAA-AA--TCAAGATCAAAAGAAGAGCCTTTGGAAGCAAAC 1176
||||| || | ||| ||| || ||||||||| ||| || ||||| |||| ||||
Sbjct 1118 TTTTGATT-GTCCTGAAAAGAAGAAGATCAAGATCAGAAGCTGATCCTTTTGAAGTAAAC 1176
Query 1177 AAC 1179
|||
Sbjct 1177 AAC 1179
Score = 359 bits (194), Expect = 6e-98
Identities = 292/339 (86%), Gaps = 7/339 (2%)
Strand=Plus/Plus
Query 1885 AGTAATGAAGATGGAGAGAAAGAAGATGTGTACCAGTTTGGAGTGATACTAATTCAGATC 1944
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1897 AGTAATGAAGATAGAGAGAAAGAAGATGTGTACCAGTTTGGAGTGATACTACTACAGATC 1956
Query 1945 ATCACAGGCAAAGTAATAGCA-GCTGCATCTTCAGAGTTGGGGAGCTTGAAGCTTCAGCT 2003
||||||||||||||| | | | || | |||||||||| |||| || ||||||||||||||
Sbjct 1957 ATCACAGGCAAAGTAGTTG-ATGCAGGATCTTCAGAGATGGGAAGTTTGAAGCTTCAGCT 2015
Query 2004 GGAGAACAGTTTGAGAGACGAACCATCGGTGTTGCGTAGCTTGGCAGATCCGTGTGTGAG 2063
|||||| |||||||||| |||||||| || ||| | ||||| |||||||| | ||| |
Sbjct 2016 CGAGAACGGTTTGAGAGATGAACCATCAGTATTGAGAAGCTTAGCAGATCCATCTGTTA- 2074
Query 2064 A-GGAACATATGCATACGAGTCATTGAGAACCACAGTAGAGTTTGCCATTAACTGTCTTT 2122
| || ||||||| || ||||| ||||| || |||||||||||||| || ||||||||||
Sbjct 2075 ACGGGTCATATGCTTATGAGTCGTTGAGGACGACAGTAGAGTTTGCTATCAACTGTCTTT 2134
Query 2123 GTGAAGATCAGAGGAAGCGGCCATCGATAGAGGATGTTGTATGGAATCTGCAGTACACAA 2182
| |||||||| || |||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct 2135 GCGAAGATCAAAGCAAGCGGCCTTCGATAGAAGATGTTGTGTGGAATCTGCAGTATACAA 2194
Query 2183 TTCAAGTGCAACAAGGATGGACA---AGCAGTGAGAACC 2218
|||||||||| |||||||||| | ||||||| |||||
Sbjct 2195 TTCAAGTGCAGCAAGGATGGAGACCGAGCAGTGGGAACC 2233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84484163410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5