BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14400.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471614 jgi|Araly1|471614|fgenesh2_kg.1__1568__AT1G14400.1 1362 0.0
Ahg484183 jgi|Araly1|484183|fgenesh2_kg.5__175__AT2G02760.1 586 1e-166
Ahg315981 jgi|Araly1|315981|fgenesh1_pm.C_scaffold_2001014 261 7e-69
> Ahg471614 jgi|Araly1|471614|fgenesh2_kg.1__1568__AT1G14400.1
Length=927
Score = 1362 bits (737), Expect = 0.0
Identities = 842/891 (95%), Gaps = 13/891 (1%)
Strand=Plus/Plus
Query 72 AttttttttACCCATTTCTCTCATCGCACGGTG--AT--ATTGAGAATCGCCGACCTGAA 127
||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 23 ATTTTTTTTTCCCATTTCTCTCATCGCACGGTGAAATAAATCGAGAATCGCCGACCTGAA 82
Query 128 TCGATCGGAAAACTTTCTCTGATTACCGGCGGTCAACACCGCTGAACACATATGTTTGTT 187
|||||||| | ||||||||| ||||||||||||| |||| ||||||| |||||||||
Sbjct 83 TCGATCGG-GTTC-TTCTCTGATCACCGGCGGTCAACGCCGC-GAACACAGATGTTTGTT 139
Query 188 TGACGACCTCTTCTCTCCGCGATC--TTTACCTCAACAACGAGATCTGTTTCCACGAAAG 245
||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 140 TGACGACCTCTTCTCGCCGTGATCTTTTTACCTCAACAACGAGATCTGTTTCCACGAAAG 199
Query 246 AAAGGAGGATGTCGACGCCAGCAAGGAAGAGGTTAATGAGGGATTTCAAGAGGTTGCAGC 305
|| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 200 AACGGAGGATGTCGACGCCAGCTAGGAAGAGGTTGATGAGGGATTTCAAGAGGTTGCAGC 259
Query 306 AAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACATTATGCTCTGGAATG 365
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 260 AAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAATATCATGCTCTGGAATG 319
Query 366 CTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTTTCAAACTCTCACTGC 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 CTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTTTCAAACTCTCACTGC 379
Query 426 AGTTCTCTGAAGATTATCCCAATAAACCACCAACAGTTCGGTTTGTGTCACGGATGTTTC 485
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AGTTCTCTGAAGATTATCCTAATAAACCACCAACAGTTCGGTTTGTGTCACGGATGTTTC 439
Query 486 ATCCTAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTC 545
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ATCCAAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTC 499
Query 546 CAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGCTCTGTGACCCTAATC 605
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CAATATATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGCTCTGTGACCCTAATC 559
Query 606 CGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGCGAGTACA 665
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 560 CGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGTGAGTACA 619
Query 666 ACAGGAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACTAGTAGTAGTTTGTTG 725
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 620 ACAGAAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACTAGTAGTAGTTTGATG 679
Query 726 TAAGCGTTGTAGCTCTCTCTACTTTCTCTCAATCACGATTCAGCAA--CAGCTTTCTTCT 783
|||||| ||||||||| ||| ||||||| ||||||| ||||||||| ||||||||||||
Sbjct 680 TAAGCGATGTAGCTCTGTCTCCTTTCTCACAATCACAATTCAGCAAAACAGCTTTCTTCT 739
Query 784 CTTTTCATTCATGTCTTGTGTTTCCAAAACTATTTAAGTGATTCCATGCTTTGATGTAAC 843
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 740 CTTTTCATTCATGTCTTGTGTTTCCGAAACTATTTAAGTGATTCAATGCTTTGATGTAAC 799
Query 844 CCAACATCCTTaaaaaaaCAACTTTGTACCAAACCATCTGAATTATTCACTTTTGTGTAT 903
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 800 TCAACATCCTTTAAAAAACAACTTTGTACCAAACCAACTGAATTATTCACTTTTGTGTAT 859
Query 904 ATATGTATTACGATTTACTTGCTAGCTACAAAAAACAAC-TTTGTACCCAA 953
|||||||||||||||| |||||||| ||| |||| ||| |||||| ||||
Sbjct 860 ATATGTATTACGATTTTCTTGCTAGGTACCGAAAA-AACCTTTGTAACCAA 909
> Ahg484183 jgi|Araly1|484183|fgenesh2_kg.5__175__AT2G02760.1
Length=864
Score = 586 bits (317), Expect = 1e-166
Identities = 429/484 (89%), Gaps = 3/484 (1%)
Strand=Plus/Plus
Query 234 TTTCCACGA-AAG-AA-AGGAGGATGTCGACGCCAGCAAGGAAGAGGTTAATGAGGGATT 290
||| ||| | ||| || || ||||||||||| ||||| |||||||| || ||||||||||
Sbjct 202 TTTGCACAACAAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATT 261
Query 291 TCAAGAGGTTGCAGCAAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACA 350
|||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 262 TCAAGAGGTTGCAGCAAGACCCACCTGCTGGAATTAGTGGTGCTCCACAAGACAACAATA 321
Query 351 TTATGCTCTGGAATGCTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTT 410
| ||| | ||||||||||| ||||| ||||||||||| || || ||||||||||||||||
Sbjct 322 TCATGTTGTGGAATGCTGTTATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTT 381
Query 411 TCAAACTCTCACTGCAGTTCTCTGAAGATTATCCCAATAAACCACCAACAGTTCGGTTTG 470
||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||
Sbjct 382 TCAAACTCTCACTGCAGTTTTCGGAAGATTATCCTAATAAGCCACCAACAGTTCGGTTTG 441
Query 471 TGTCACGGATGTTTCATCCTAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTAC 530
| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 442 TTTCACGGATGTTCCATCCAAATATTTATGCTGATGGGAGTATATGCTTGGACATTCTCC 501
Query 531 AAAACCAGTGGAGTCCAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGC 590
| ||||| ||||||||||| || ||||| || |||||||| |||||||| ||||| ||||
Sbjct 502 AGAACCAATGGAGTCCAATATACGATGTCGCGGCTATACTAACCTCCATTCAGTCATTGC 561
Query 591 TCTGTGACCCTAATCCGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAA 650
||||||| ||||||||||||||||||||||| |||||||| || || |||| ||| ||||
Sbjct 562 TCTGTGATCCTAATCCGAATTCTCCTGCAAATTCGGAAGCGGCACGAATGTTCAGTGAAA 621
Query 651 GCAAGCGCGAGTACAACAGGAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACT 710
||||||||||||||||||| ||||| || || ||||| || |||||||||||||| ||||
Sbjct 622 GCAAGCGCGAGTACAACAGAAGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACT 681
Query 711 AGTA 714
||||
Sbjct 682 AGTA 685
> Ahg315981 jgi|Araly1|315981|fgenesh1_pm.C_scaffold_2001014
Length=471
Score = 261 bits (141), Expect = 7e-69
Identities = 341/434 (79%), Gaps = 27/434 (6%)
Strand=Plus/Plus
Query 254 ATGTCGACGCCAGCAAGGAAGAGG-TTAATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 312
||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAACTCCAGCAAGGAAGAGGCTT-ATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 59
Query 313 ACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACAT-TATGCTCTGGAATGCTGTCA 371
||||| || || | ||||| | | || || |||||||| | | |||||||| || || |
Sbjct 60 TCCTGCTGGAATCAATGGTGATTCTCAAGATAACAACATCT-TACTCTGGAACGCCGTTA 118
Query 372 TATTTGGGCCTGATGACACACCATGGGATGGAGGTACT-TTCAAACTCTC-ACT--G-CA 426
| ||||| || ||||| |||| |||||||||||||| || ||| | | | | | |
Sbjct 119 TCTTTGGTCCGGATGATACACTTTGGGATGGAGGTACAATT-AAAGTTTGTATTATGACC 177
Query 427 GTTC--TCTG-A-AG-ATTATCCCAATAAACCACCAACAGTTCGGTTTGTGT-CACGGAT 480
||| | | | || ||||||| || || ||||| || ||||| ||||| | | |||||
Sbjct 178 CTTCAATTTACAGAGGATTATCCAAACAAGCCACCGACTGTTCGCTTTGT-TACTCGGAT 236
Query 481 GTTTCATCCTAATATTTATGCAGATGGGAGTATCTG-CTTGGACATTCT-ACAAAACCAG 538
|||||| || ||||| ||||||||||| ||||| || |||| |||| || ||| || |||
Sbjct 237 GTTTCACCCAAATATCTATGCAGATGGAAGTATTTGTCTTG-ACAT-CTTACAGAATCAG 294
Query 539 TGGAGTCCAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTC-CTTGCT-CTGTG 596
|||||||| || ||||||||||| || || ||||| || |||||||| || || |||||
Sbjct 295 TGGAGTCCTATTTATGATGTTGCAGCAATTCTTACATCTATCCAGTCACT--CTTCTGTG 352
Query 597 A-CCCTAATCCGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAG 655
| ||| | || || || ||||||||||| |||||||| || | | |||||||| ||||
Sbjct 353 ATCCC-AGCCCAAACTCACCTGCAAACTCAGAAGCTGCCCGCTTATTCAGCGAAAACAAG 411
Query 656 CGCGAGTACAACAG 669
|| || ||||||||
Sbjct 412 CGAGAATACAACAG 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5