BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14410.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471615 jgi|Araly1|471615|fgenesh2_kg.1__1569__AT1G14410.1 1568 0.0
Ahg484180 jgi|Araly1|484180|fgenesh2_kg.5__172__AT2G02740.1 643 0.0
Ahg931152 jgi|Araly1|931152|scaffold_303609.1 139 4e-32
Ahg942663 jgi|Araly1|942663|scaffold_603207.1 97.1 2e-19
> Ahg471615 jgi|Araly1|471615|fgenesh2_kg.1__1569__AT1G14410.1
Length=1062
Score = 1568 bits (849), Expect = 0.0
Identities = 989/1052 (94%), Gaps = 27/1052 (3%)
Strand=Plus/Plus
Query 73 GAGAGGGAACAAACAC-AAAGCGATGTCGCAACTCTTATCGACTCCTCTAATGGCGGTCA 131
|||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 27 GAGAGGGAACAAACACAAAAGCAATGTCGCAACTCTTATCTTCTCCTCCAATGGCGGTCA 86
Query 132 ACTCCAATCCTCGCTTTCTCTCTTCGTCTTCAGTACTCGTCACCGGAGGTTTTGCAGTGA 191
||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||
Sbjct 87 ACTCCAATCCTCGCTTTCTCTCTTCGTCTTCAGCACTCGTCGCCGGCGGTTTTGCAGTGA 146
Query 192 AACGGCATGGATTCGCCTTGAAACCGACGACGAAGACGGTGAAGCTCTTCTCGGTTAAGT 251
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 147 AACGCCATGGATTCGCCTTGAAACCGACGACGAAGACGGTGAAGCTCTTATCGGTTAAGT 206
Query 252 CTCGCCAGACGGATTACTTCGAGAAGCAGAGGTTCGGTGACTCTTCTTCTTC-TCCT-TC 309
| ||||||||||||||||||||||||||||| |||||||||||||||||||| || | ||
Sbjct 207 CCCGCCAGACGGATTACTTCGAGAAGCAGAGATTCGGTGACTCTTCTTCTTCTTCTTCTC 266
Query 310 -ACCTGCTGAAGGATTGCCTGCTAGATTTTACGTGGGTCATTCGATATACAAAGGGAAAG 368
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AAAATGCTGAAGGATTGCCTGCTAGATTTTACGTGGGTCATTCGATATACAAAGGGAAAG 326
Query 369 CTGCGTTAACAGTGGACCCAAGAGCACCAGAGTTTGTGGCTTTAGACTCTGGAGCTTTCA 428
||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 327 CTGCGCTAACAGTGGAGCCAAGAGCACCAGAGTTCGTGGCTTTAGACTCTGGAGCTTTCA 386
Query 429 AGTTGTCAAAAGATGGTTTCTTATTGCTCCAGTTTGCTCCTTCTGCTGGTGTACGACAAT 488
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 387 AGTTGTCGAAAGATGGTTTCGTATTGCTCCAGTTTGCTCCTTCTGCTGGTGTACGACAAT 446
Query 489 ATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGAAATTGGAACTCTAGTTA 548
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 447 ATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGAAATCGGAACTCTAGTTA 506
Query 549 GCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCATTCAAGGGGAAAAGTGATG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCATTCAAGGGGAAAAGTGATG 566
Query 609 AGGGAAAAGTAAGGAAAGTGTTGAAAGTTGAGCCTCTCCCAGATGGTTCTGGTCATTTCT 668
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 567 AGGGAAAAGTGAGGAAAGTGTTGAAAGTTGAGCCTCTCCCAGATGGTTCTGGTCACTTCT 626
Query 669 TCAACCTAAGTGTTCAAAACAAGCTTGTGAATGTGGATGAGAGCATTTACATACCAATTA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TCAACCTAAGTGTTCAAAACAAGCTTGTGAATGTGGATGAGAGCATTTACATACCAATTA 686
Query 729 CTCGAGCAGAGTTTGCTGTTCTTATCTCTGCATTCAATTTTGTCTTGCCTTACCTTATAG 788
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 687 CTCGAGCAGAGTTTGCTGTTCTTATCTCTGCCTTCAATTTTGTCTTGCCTTACCTTATAG 746
Query 789 GCTGGCATGCATTTGCAAACTCCATCAAACCAGAAGAGACAAGCCGTGTGAACAACGCTT 848
||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 747 GCTGGAATGCATTTGCAAACTCCATCAAACCAGAAGACACAAACCGTGTGAACAACGCTT 806
Query 849 CGCCTAACTATGGAGGAGACTATGAATGGAATAGATGATGAATCTTAGGGCCATAACAGG 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 807 CGCCTAACTATGGAGGAGACTATGAATGGAATAGATGATGAATCTTAGGGCCATAATAGG 866
Query 909 AACATATATCAGAGATCATCCTA--CC--C--TTTTTGTTTTGCTGATAGGTTTCGTCAG 962
||||||||||||||||||||||| || | ||||||||||||||||||||||| | |
Sbjct 867 AACATATATCAGAGATCATCCTAGTCCTACCCTTTTTGTTTTGCTGATAGGTTTCTTGAA 926
Query 963 GATTGATATATGTTCGTAGGTAGCAGAAGAGACTAAAAGTAGT-TTATTTTTTCGTCCTT 1021
|||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 927 GATTGATATACGTTCGTAGGTAGCAGAAGAGACTAAAAGTAGTGTTACTTTTTCTTCCTT 986
Query 1022 TTGACCAAATGTTCAAAAGCCACATATCATTTCGTGGTAAGCGGTTGTATCTCAAAACAT 1081
|||||||||||| | | | || ||| |||||||||||||||||||||||
Sbjct 987 TTGACCAAATGT--A---------T-T--TT--GTGTTAAGCGGTTGTATCTCAAAACAT 1030
Query 1082 CAGTCTGATCTTAGTTGTTTTTGATTTAAGAG 1113
||||||||||||| |||||||||||| |||||
Sbjct 1031 CAGTCTGATCTTATTTGTTTTTGATTGAAGAG 1062
> Ahg484180 jgi|Araly1|484180|fgenesh2_kg.5__172__AT2G02740.1
Length=1034
Score = 643 bits (348), Expect = 0.0
Identities = 563/664 (85%), Gaps = 25/664 (4%)
Strand=Plus/Plus
Query 243 CGGTTAAGTCTCG-CCAGACGGATTACTTCGAGAAGCAGAGGTTCGGTGACTCTTCTTCT 301
|||| |||||||| | ||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct 191 CGGTGAAGTCTCGACAAGA-TGATTACTTTGAGAAGCAGAGGTTTGGTGACTCGTCTTCT 249
Query 302 TCTCCTTCACCTGCTGAAGGAT-TGCCTGCTAGATTTTACGTGGGTCATTCGATATACAA 360
|| | | | |||||||||| | || | ||||||||||||||||||||||| |||||
Sbjct 250 TC-GC-AAAAC-GCTGAAGGATCT-TCTCCAAGATTTTACGTGGGTCATTCGATTTACAA 305
Query 361 AGGGAAAGCTGCGT-TAACAG-TGGACCCAAGAGCACCAGAGTTTGTGGCTTTAGACTCT 418
|||||||||||| | | || | | || ||| |||||||||||||||||||||| || |||
Sbjct 306 AGGGAAAGCTGC-TCTTAC-GATAGAGCCACGAGCACCAGAGTTTGTGGCTTTGGAATCT 363
Query 419 GGAGCTTTCAAGTTGTCAAAAGATGGTTTCTTATTGCTCCAGTTTGCTCCTTCTGCTGGT 478
|| || |||||| || |||| || ||||| || |||||||||||||||||| | ||||||
Sbjct 364 GGTGCGTTCAAGCTGACAAAGGAAGGTTTTTTGTTGCTCCAGTTTGCTCCTGCAGCTGGT 423
Query 479 GTACGACAATATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGAAATTGG- 537
|| || ||||| |||||||| | ||| ||||| ||||| ||||| ||||||||||| ||
Sbjct 424 GTTCGTCAATACGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGAAATCGGT 483
Query 538 AACTCTAGTTAGCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCATTCAAGGG 597
|| |||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 484 AA-TCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCATTCAAGGG 542
Query 598 GAAA---AGTGATGAGGGAAAAGTAAGGAAAGTGTTGAAAGTTGAGCCTCTCCCAGATGG 654
||| |||||||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 543 AAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCCCTCCCAGATGG 602
Query 655 TTCTGGTCATTTCTTCAACCTAAGTGTTCAAAACAAGCT-TGTGAATGTGGATGAGAGCA 713
|||||| | ||||| ||||| ||||||||||||||||| | ||||||| ||||||||
Sbjct 603 TTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCT-TGAATGTAGATGAGAGTG 661
Query 714 TTTACATACCAATTACTCGAGCAGAGTTTGCTGTTCTTATCTCTGCATTCAATTTTGTCT 773
| ||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||
Sbjct 662 TATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAACTTCATCT 721
Query 774 TGCCTTACCTTATAGGCTGGCA-TGCATTTGCAAACTCCATCAAACCAGAAGA-GAC-AA 830
|||| |||||||||||||| | ||||||||| |||||||||||||||||||| | | ||
Sbjct 722 TGCCGCACCTTATAGGCTGG-AGTGCATTTGCTAACTCCATCAAACCAGAAGACG-CTAA 779
Query 831 GCCGTGTGAACAACGCTTCGCCTAACTATGGAGGAGACTATGAATGGAATAGATGATGAA 890
||| | ||||| || ||||| || |||||||||||||||||||||| |||||||| |
Sbjct 780 -CCGCCTTAACAATGCATCGCCCAAGTATGGAGGAGACTATGAATGGAGTAGATGATCA- 837
Query 891 TCTT 894
||||
Sbjct 838 TCTT 841
> Ahg931152 jgi|Araly1|931152|scaffold_303609.1
Length=265
Score = 139 bits (75), Expect = 4e-32
Identities = 86/91 (95%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 421 AGCTTTCAAGTTGTCAAAAGATGGTTT-CTTATTGCTCCAGTTTGCTCCTTCTGCTGGTG 479
||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 35 AGCTTTCAAGTTGTCAAAAGATGGTTTTCT-ATTGCTCCAATTTGCTCCTTCTGCTGGTG 93
Query 480 TACGACAATATGATTGGAGCAAGAAACAGGT 510
||||||||||| ||||| |||||||||||||
Sbjct 94 TACGACAATATAATTGGGGCAAGAAACAGGT 124
> Ahg942663 jgi|Araly1|942663|scaffold_603207.1
Length=557
Score = 97.1 bits (52), Expect = 2e-19
Identities = 80/92 (87%), Gaps = 7/92 (8%)
Strand=Plus/Plus
Query 114 CTCCTCTAATGGCGGTCAACTCCAATCCTCGCTTTCTCTCTTCGTCTTCAGTACTCGTCA 173
|||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 14 CTCCTCCAATGGCGGTCAACTCCAATCCTCGCTTTCTCTCTTTTTCTTCGGTGCTCGTC- 72
Query 174 CCGGAGGTTTTGCAGTGAAACGGCATGGATTC 205
|| |||||||||||||||||||| ||||
Sbjct 73 --GG---TTTTGCAGTGAAACGGCATG-ATTC 98
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5