BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14420.1
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471616 jgi|Araly1|471616|fgenesh2_kg.1__1570__AT1G14420.1 2748 0.0
Ahg484177 jgi|Araly1|484177|fgenesh2_kg.5__169__AT2G02720.1 732 0.0
Ahg492364 jgi|Araly1|492364|fgenesh2_kg.7__1797__AT4G24780.1 93.5 5e-18
> Ahg471616 jgi|Araly1|471616|fgenesh2_kg.1__1570__AT1G14420.1
Length=1764
Score = 2748 bits (1488), Expect = 0.0
Identities = 1679/1771 (95%), Gaps = 13/1771 (1%)
Strand=Plus/Plus
Query 1 AATCTTTTAATCCCGGCAGGCCTATCTGAAACAACAACCTCCGTTTGAGGTTTTGCCGGG 60
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 1 AATCTTTTAATCCCGGCAGGCCTATCTGAAACCACAACCTCCGCTTGTGGTTTTGCCGGG 60
Query 61 AAAATATAAAGTTCA-CAGGCTTTGGTCTCTGCATTTGCAATATATTTAAAATGGCAGCA 119
|||| |||||||||| | |||||| || | |||||||||| ||| || ||||||||||
Sbjct 61 AAAA-ATAAAGTTCATC-GGCTTT--TCCCCGCATTTGCAAAATAATTGAAATGGCAGCT 116
Query 120 GCT-TTCTTGAATCTTGGCGGCTATGTTTTCGTTTTCTTCTCTTCGTTCTTAGCTATAGT 178
| | || ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 117 G-TGTTTTTGAATCTTGGCGGCTACGTTTTTGTTTTCTTCTCGTCGTTCTTAGCTATAGT 175
Query 179 GGCCCCACAGGTTCGAGGCAATGTTGCTGTCTTTGATAGCTACTGGACGCAACGACAAAG 238
||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 176 GGCCCCACAGGTTCGAGCCAATGTTGCTGTCTTTGATAGCTACTGGACGCAGCGTCAAAG 235
Query 239 TGATGCATTGAAACAAACCATCGGCTCTTACGATCCTCATCCACTTAACGTCACCAACCA 298
|||||||||||||| ||||| || |||||||||||| ||||| ||||||||||||||||
Sbjct 236 CGATGCATTGAAACAGACCATGGGATCTTACGATCCTAATCCAATTAACGTCACCAACCA 295
Query 299 TTTTAATTACCATGTCAATATAGCAGTGGATGCATCGGAATCAAGGAACGATACAAGGAG 358
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 296 TTTTAATTACCATGTCAATATAGCAGTGGATGTATCGGAATCAAACAACGATACAAGGAG 355
Query 359 AGAGCTTACTCAGGTGAGAAGTGGTCGTAAAACGCACAAAA-GCAGCGGAAAATGCCTAG 417
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
Sbjct 356 AGAGCTTACTCAGGTGAGAAGTGGTCGTAAAAC-AAAAAAACACAGCGGAAAATGCCTGG 414
Query 418 CTTATAACCCGATAGACAACTGCTGGCGATGCGATCGTAACTGGGCTAATAACCGGAAGA 477
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 415 CTTATAACCCGATAGACAAATGCTGGCGATGCGATCGTAACTGGGCGAAAAACCGGAAGA 474
Query 478 AACTAGCCGACTGTGTGCTCGGATTCGGCCGGAGAACCACCGGAGGAAAAGACGGACCGA 537
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 475 AACTAGCGGATTGTGTGCTCGGATTCGGCCGGAGAACCACTGGAGGAAAAGACGGACCGA 534
Query 538 TATACGTCGTCAAAGACGCGTCTGACAACGATCTTATCAACCCTAAACCAGGAACGTTAA 597
||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 535 TATACGTCGTCAAGGACGCGTCTGACGATGATCTTATCAACCCTAAACCAGGAACGCTAA 594
Query 598 GGCATGCAGTGACTCGAGACGGACCGCTTTGGATCATATTCGCAAGAAGCATGATCATAA 657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGCATGCAGTGACTCGAAACGGACCGCTTTGGATCATATTCGCAAGAAGCATGATCATAA 654
Query 658 AACTGCAACAAGAACTGATGATAACGAGCGACAAAACAATCGATGGAAGAGGAGCTAGGG 717
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 655 AACTGCAACAAGAACTGATGATAACTAGCGACAAAACAATCGATGGAAGAGGAGCTAGGG 714
Query 718 TTTACATCATGGAAGGTGCTGGATTAACGTTGCAATTTGTGAATAATGTGATCATTCACA 777
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct 715 TTTACATCATGGAAGGTGCTGGATTAACGTTGCAATATGTAAATAATGTGATCATACACA 774
Query 778 ATATTTATGTCAAGCACATTGTTCCTGGGAACGGTGGGTTGATCAGAGACTCTGAGGCTC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 775 ATATTTATGTCAAGCACATTGTTCCTGGGAACGGTGGGTTGATCAGAGACTCTGAGGATC 834
Query 838 ACATAGGGCTTAGGACAAAAAGTGATGGTGATGGAATCAGTTTGTTTGGAGCAACCAATA 897
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 835 ACATAGGGCTTAGGACAAAAAGCGATGGTGATGGAATCAGCTTGTTTGGAGCAACCAATA 894
Query 898 TTTGGATCGACCATGTCTCAATGACAAGATGTGCAGATGGTATGATCGATGCTATTGACG 957
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTTGGATCGATCATGTCTCAATGACAAGATGTGCAGATGGTATGATCGATGCTATTGACG 954
Query 958 GCTCCACTGCTGTAACTATTTCCAACAGTCATTTCACCGACCACCAAGAGGTGATGTTGT 1017
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 955 GCTCCACTGCTGTAACTATTTCCAATAGTCATTTCACCGACCACCAAGAGGTGATGTTGT 1014
Query 1018 TTGGGGCGAGGGACGAACACGTGATCGACAAGAAAATGCAGATAACGGTTGCGTTTAACC 1077
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1015 TTGGGGCGAGGGATGAACACGTGATAGACAAGAAAATGCAGATAACGGTTGCGTTTAACC 1074
Query 1078 ACTTCGGTAAGCGATTGGAACAGAGAATGCCTCGTTGCAGATACGGAACGATACATGTGG 1137
||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1075 ACTTCGGTAAGAGATTGGAACAGAGAATGCCTCGTTGCAGATATGGAACAATCCATGTGG 1134
Query 1138 TGAACAATGACTACACACATTGGGAAATGTATGCAATTGGTGGGAACATGAACCCTACAA 1197
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1135 TGAACAATGACTACACACATTGGGAAATGTATGCAATTGGTGGAAACATGAACCCTACAA 1194
Query 1198 TTATTAGTCAAGGCAATCGTTTCATTGCTCCTCCTAATGAAGAAGCCAAACAGATTACAA 1257
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1195 TTATTAGTCAAGGCAATCGTTTCATTGCTCCTCCTAACGAACAAGCCAAACAGATTACAA 1254
Query 1258 AAAGAGAGTACACACCATACGGTGAATGGAAATCTTGGAATTGGCAATCAGAAGGAGATT 1317
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AGAGAGAGTACACACCATACACTGAATGGAAATCTTGGAATTGGCAATCAGAAGGAGATT 1314
Query 1318 ACTTTCTCAACGGAGCTTATTTTGTGCAATCCGGAAAAGCAAATGCGTGGAGCTCTAAAC 1377
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1315 ACTTCCTCAACGGAGCTTATTTTGTGCAATCCGGGAAAGCAAATGCGTGGAGCTCTAAAC 1374
Query 1378 CGAAAACCCCGCTCCCAAACAAGTTTACAATTCGACCTAAACCGGGAACGATGGTCCGGA 1437
|||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1375 CGAAAAACCCGCTCCCGAACAAGTTTGCAATTCGACCTAAACCGGGAACGATGGTCCGGA 1434
Query 1438 AACTTACCATGGATGCAGGAGTACTTGGCTGCAAACTTGGTGAAGCTTGCTGATTACATA 1497
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 1435 AACTTACCATGGATGCAGGAGCACTTGGCTGCAAACAGGGTAAAGCTTGCTGATTACATT 1494
Query 1498 ACCATTTTGCCCCCTTCCAACAAACAGCCAAAGCTTTTGCCCTGTTTTTGCTTGTTGTTC 1557
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1495 ACCATTTTTTCCCCTTCCAACAAACAGACAAAGCTTTTGCCCTGTTTTTGCTTGTTGTTC 1554
Query 1558 AAGAAAAACAATATGgagagagaggagagaAAACGAAAGAGAATGTTTTTCTATGAATGG 1617
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1555 AAGAAAAACAATATGGAGAGAGAGGAGAGAAAACTAAAGAGAATGTTTTTCTATGAATGG 1614
Query 1618 TGTTTTGTAACTAAGACTGCATATATAATGCGCAGTTTTCGGATT-ATTATTCTTAATAG 1676
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1615 TGTTTTGTAACTAAGACTGCATATATAATGCGCAGTTT-CGGATTTATTATTCTTAATAG 1673
Query 1677 GATCCAGGTTCCTTTTTCTACGGAAAAATGAGAAAATCAAAATACCTTAGATCT-T-TAT 1734
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||
Sbjct 1674 GATCCAGGTTCCTTTTTCTACGGAAAAATGAGAAAAGCAAAATACCTTAGATATCTATAT 1733
Query 1735 ACTAATTATACAATCTCCTCGTAATACTTTC 1765
||||| |||||||||||||| ||||||||||
Sbjct 1734 ACTAAATATACAATCTCCTCCTAATACTTTC 1764
> Ahg484177 jgi|Araly1|484177|fgenesh2_kg.5__169__AT2G02720.1
Length=1718
Score = 732 bits (396), Expect = 0.0
Identities = 857/1074 (80%), Gaps = 54/1074 (5%)
Strand=Plus/Plus
Query 427 CGATAGACAACTGCTGGCGATGCGATC-GTAACTGGG-CTAATAACCGGAAGAAACTAGC 484
|||| || || ||||||||| |||| | ||||||| | || |||||||| ||||||||
Sbjct 464 CGATCGATAAATGCTGGCGAGGCGA-CAAAAACTGGGAC-AAAAACCGGAAAAAACTAGC 521
Query 485 CGACTGTGTGCTCGGATTCGGCCGGAGAACCACCGGAGG-AAAAGACGGACCGATATACG 543
|| || || || ||||| ||||| | ||| |||||||| |||| ||||||| || || |
Sbjct 522 AGATTGCGTCCTTGGATTTGGCCGTAAAACAACCGGAGGCAAAA-ACGGACCAATCTATG 580
Query 544 TCGTCAAAGACGCGTCTGACAACGATCTTA-TCAACCCTAAACCAGGAACGT-TAAGGCA 601
| |||| ||| | || |||||||||| || | ||||| ||||| ||||| | |||| ||
Sbjct 581 TAGTCACTGACCCATCCGACAACGATC-TACTGAACCCAAAACCGGGAAC-TATAAGACA 638
Query 602 TGCAGTGACTCGAGACGGACCGCTTTGGATCATATTCGCAAGAAGCATGATCATAAAACT 661
|| ||||| ||||| |||| || |||||| ||||||| ||||||||||||||||||||
Sbjct 639 CGCCGTGACAAGAGACCGACCACTGTGGATCGTATTCGCGAGAAGCATGATCATAAAACT 698
Query 662 GCAACAAGAACTGATGATAACGAGCGACAAAACAATCGATGGAAGAGGAGCTAGGGTTTA 721
||||||||||||||| ||||||| || ||||||||||| || | ||||| || ||||
Sbjct 699 GCAACAAGAACTGATCATAACGAATGATAAAACAATCGACGGTCGGGGAGCGAGAATTTA 758
Query 722 CATCA-TGGAAGGTGCTGGATTAACGTTGCAATTTGTGAATAATGTGATCATTCACAATA 780
|| | ||| ||||| || ||||||||||| || |||| |||||||| || || |||
Sbjct 759 TATAACTGG-GGGTGCAGGTTTAACGTTGCAGTTCGTGAGGAATGTGATAATACATAATG 817
Query 781 TTTATGTCAAGCACATTGTTCCTGGGA-ACGGTGGGTTGATCAGAGACTCTGAGGC-TCA 838
|| || |||| | |||| ||| |||||| |||| |||||||| || || |||
Sbjct 818 TTCATATCAAACTCATT-AAAAAAGGAGTTGGTGGGGTGATTAGAGACTCCGA-GCATCA 875
Query 839 CATA-GGGCTTAGGACAAAAAGTGATGGTGATGGAATCAGT-TTGTTTGGAGCAACCAAT 896
|| |||| | |||||| |||||||||||||| || | | || ||||||||||| |||
Sbjct 876 -TTATGGGCATCGGACAATGAGTGATGGTGATGGGATTAATATT-TTTGGAGCAACGAAT 933
Query 897 ATTTGGATCGACCATGTCTCAATGACAAGA-TGTGCAGATGGTATGATCGATGCTATTGA 955
|||||||||| |||||||||||||| || ||| | ||||| ||||| ||||| | | |
Sbjct 934 GTTTGGATCGATCATGTCTCAATGAC-GGATTGTTCTGATGGGATGATTGATGCGA-TCA 991
Query 956 -CGGCTCCACTGCTG-TAACTATTTCCAA--CAGTCATTTCACCGACCACCAAGAGGTGA 1011
|| || || || | | ||||| ||||| || ||||| ||||||||| | |||||||
Sbjct 992 TGGGATCGACCGC-GATTACTATCTCCAATTCA--CATTTTACCGACCACGACGAGGTGA 1048
Query 1012 TGTTGTTTGGGGCG-AGGGACGAA-CACGTGATCGACAAGAAAATGCAGATAACGGTTGC 1069
|| ||||||||| | | || || | ||||||||||||||||||||||||||||||||
Sbjct 1049 TGCTGTTTGGGG-GTACAAAC-AAGGATGTGATCGACAAGAAAATGCAGATAACGGTTGC 1106
Query 1070 GTTTAACCACTTCGGTAAGCGATTGGAA-CAGAGAATGCCTCGT-TGCAGATACGGAACG 1127
||||||||| || |||||| ||||| || || |||||||| | | |||||| || |
Sbjct 1107 GTTTAACCATTTTGGTAAGAGATTG-AAGCAAAGAATGCCAAGGGT-CAGATATGGTTTG 1164
Query 1128 ATACATGTGGTGAACAATGACTACACACATTGGGAAATGTATGCAATTGGTGGGAACATG 1187
| ||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 1165 GTCCATGTTGTGAACAATGACTACACTCACTGGGAAATGTATGCAATTGGTGGAAACATG 1224
Query 1188 AACCCTACAATTATTAGTCAAGGCAATCGTTTCATTGCTCCTCCTAATGAAGAAGCCAAA 1247
|||||||| ||||| || |||||||||||||||||||||||||||| |||||| ||||
Sbjct 1225 AACCCTACCATTATAAGCCAAGGCAATCGTTTCATTGCTCCTCCTATTGAAGATTCCAAG 1284
Query 1248 CAGATTACAAAAAGAGAGTACACACCATA-CGGTGAATGGAAATCTTGGAATTGGCAATC 1306
||| ||||||| |||||||||||||| || | |||||||||| | ||||||||||||||
Sbjct 1285 CAGGTTACAAAGAGAGAGTACACACCTTATCC-TGAATGGAAAACATGGAATTGGCAATC 1343
Query 1307 AGAAGGA-GATTACTTTCTC-AACGGAGCTTATTTTGTGCAATCCGGAAAAGCAAATGCG 1364
||| | | ||||| ||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1344 AGA-GAAAGATTA-TTTCTTGAACGGAGCTTACTTTGTGCAATCAGGAAAAGCAAATGCG 1401
Query 1365 TGGAGCTCTAAACCGAAAACCCCGCTCCCAA-ACAAGTTTACAATTCGACCTAAA-CCGG 1422
|||||||||| ||||||| || |||| | | |||||| |||| || || | | || |
Sbjct 1402 TGGAGCTCTACCCCGAAAAATCCAATCCCTAGA-AAGTTTGCAATCCGGCC-ACAGCCAG 1459
Query 1423 GAACGATGGTCCGGAA-ACTTACCATGGATGCAGGAGTAC--TTGGCTGCAAAC 1473
|||| | |||| | || ||| |||| |||||| || ||| ||||||||||||
Sbjct 1460 GAACAAAGGTCAG-AAGACTCACCAAGGATGCTGG--TACGCTTGGCTGCAAAC 1510
> Ahg492364 jgi|Araly1|492364|fgenesh2_kg.7__1797__AT4G24780.1
Length=1554
Score = 93.5 bits (50), Expect = 5e-18
Identities = 135/174 (78%), Gaps = 14/174 (8%)
Strand=Plus/Plus
Query 1044 GACAAGAAAATGC-AGATAACGGTTGCGTTTAACCACTTCGGT-AA-GCGATTGGAACAG 1100
|||||||| |||| || | || |||| |||||||| || ||| || || || | ||
Sbjct 839 GACAAGAATATGCAAG-TCACCATTGCTTTTAACCATTTTGGTGAAGGC-CTT-GTCCAA 895
Query 1101 AGAATGCCTC-GTTGCAGATA-CGGAACGATACATGTGGTGAACAATGACTACACACATT 1158
|||||||| | | || ||| | || || | ||||||||||||||||||||||||||||
Sbjct 896 AGAATGCC-CAGGTGTAGACATGGGTAC-TTCCATGTGGTGAACAATGACTACACACATT 953
Query 1159 GGGAAATGTATGCAATTGGTGGGAACATG--AACCCTACAATTATTAGTCAAGG 1210
|||| |||||||| ||||| || || || || |||||||| | |||||||||
Sbjct 954 GGGAGATGTATGCGATTGGAGG-AAG-TGCTAATCCTACAATCAATAGTCAAGG 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66353206790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5