BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14430.1
Length=1981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920333 jgi|Araly1|920333|scaffold_101614.1 2651 0.0
> Ahg920333 jgi|Araly1|920333|scaffold_101614.1
Length=1735
Score = 2651 bits (1435), Expect = 0.0
Identities = 1632/1729 (94%), Gaps = 6/1729 (0%)
Strand=Plus/Plus
Query 220 AAGATTCTTAGCTGAAAATAATGACGCAAGAAAGATTCAAGAACAACCTTAACGCCGTCG 279
|||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 1 AAGATTCTGAGCTGAAAATAATGAAGCAAGAAAGATTCAAGAAGAACCTAAACGCCGTCG 60
Query 280 TGA-TATCATTCTTCTTCTTCTTCCTCTGTTCCACGTCGGATTTGCTCCTTCCACGTTCA 338
| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 T-ATTATCATTCTTCTTCTTCTTCCTCTGTTCCACGTCGGATTTGCTCCTCCCACGTTCA 119
Query 339 CCGTTAGCTATTCTCACCGGCGGGAGGTGGGATCTTCTGCAGCCGAGTGTAGGTATATCC 398
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 CCGTTAGCTATTCTCACCGGCGGGAGGTGGGATCTCCTGCAGCCGAGTGTAGGTATATCC 179
Query 399 GCAATGCACATGCAGCTTCTACACAACAACAAAGTCGTCATCTTTGACCGTACGGATTAT 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCAATGCACATGCAGCTTCTACACAACAACAAAGTCGTCATCTTTGACCGTACGGATTAT 239
Query 459 GGACCTTCGAATGTTTCTCTCCCTTCTCAAACCTGCCAAAACGCCACCGTTTTTGACTGC 518
|||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 240 GGACCTTCGAATCTTTCTCTACCTTCTCAAACCTGCCAAAACGGCACCGTTTTCGACTGC 299
Query 519 TCTGCTCATTCAATACTATACGACGTCGCTTCAAATACCTTTCGCCCACTTACACTACGT 578
||||||||||| ||||||||||||||||||||||| |||| ||| ||||| ||||||||
Sbjct 300 TCTGCTCATTCGATACTATACGACGTCGCTTCAAACACCTATCGTCCACTCACACTACGA 359
Query 579 TACGACACGTGGTGCTCTTCCGGTTCTTTAAACGCTTCCGGTTCTTTAATCCAAACCGGC 638
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 TACGACACGTGGTGCTCCTCCGGTTCTTTAAACGCTTCCGGTTCTTTGATCCAAACCGGC 419
Query 639 GGTTATGGCAACGGCGAAAGAACTGTACGGGTTTTCACACCTTGCGACGGAGGAGTTGGA 698
||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 420 GGTTATGGCGCCGGCGAAAGAACTGTACGGATATTCACACCTTGCGACGGAGGAGTTGGA 479
Query 699 AGCGTTTCGTGTGATTGGATTGAGAACAGAGCGTATCTCTCCTCTCGCCGGTGGTATTCC 758
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGCGTTTCGTGTGATTGGGTTGAGAACAGAGCGTATCTCTCCTCTCGCCGGTGGTATTCC 539
Query 759 ACCAATCAGATTCTTCCCGATGGTCGGATTATCATCGTCGGCGGAAGAAGAGCTTTCAAC 818
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 540 ACCAATCAGATTCTTCCCGATGGTCGAATTATCATCGTCGGCGGAAGAAGAGCTTTCACC 599
Query 819 TACGAGTTTTACCCCAAGGATCCGGGAGAATCCGTTTTCAATCTCAGATTCTTGGCGGAG 878
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TACGAGTTTTACCCCAAGAATCCGGGAGAATCCGTTTTCAATCTCAGATTCTTGGCGGAG 659
Query 879 ACGAGAGATCCGAATGAAGAAAACAATCTTTATCCGTTTCTTCATCTTCTCCCCGACGGT 938
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACGAGAGATCCGAATGAAGAAAACAATCTTTATCCGTTTCTTCATCTTCTCCCCGACGGA 719
Query 939 AATCTCTTCATCTTCGCCAATCGGAGATCGATTTTGTTCGATTTCGTCAATCACCGAATC 998
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 720 AACCTCTTCATCTTCGCCAATCGGAGATCAATTTTGTTCGATTTCGTCAATCATCGAATC 779
Query 999 ATCAAGGAGTTTCCACAGATTCCCGGCGGCGATAAACGGAATTATCCCAGCACTGGCTCC 1058
|||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 780 ATCAAGGAGTTTCCGGTGATTCCCGGCGGTGATAAACGGAATTACCCCAGCACTGGCTCC 839
Query 1059 TCCGTGCTCCTCCCTCTCTTTCTCACCGGAGACATTAACAGAACGAAGATAACTG-CTGA 1117
||||||||||||||| | ||||||||||| || | |||| || | ||||||| || ||||
Sbjct 840 TCCGTGCTCCTCCCTATTTTTCTCACCGGCGATAATAACCGATCTAAGATAA-TGGCTGA 898
Query 1118 GGTTATGGTATGCGGCGGTGCTCCGCCGGGAGCGTTCTTCAAAGCGGCGAGGACGATTCC 1177
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 899 GGTTATGGTATGCGGCGGTGCTCCGCCGGGAGCGTTCTTGAAAGCGGCGAGGACAATTCC 958
Query 1178 TAAAATCTTCGTCGCGGG-ATCACGCACGTGTGGGAGATTGAAAGTGACCGACCCGGATC 1236
|||||||||||||| | | ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 959 TAAAATCTTCGTCG-GAGCATCTCGCACGTGTGGGAGATTGAAAGTGACCGACCCGAATC 1017
Query 1237 CGAAATGGGTCATGGAGCAAATGCCATCGCCACGTGTCATGTCTGATATGTTACTGTTAC 1296
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1018 CGAAATGGGTGATGGAGCAAATGCCATCGCCACGTGTGATGTCTGATATGTTACTGATAC 1077
Query 1297 CAAACGGTGACGTTTTGATCATTAACGGTGCTGCTAACGGAACCGCTGGTTGGGAAGACG 1356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 CAAACGGTGACGTTTTGATCATTAACGGTGCTGCTAACGGAACCGCTGGCTGGGAAGACG 1137
Query 1357 CGACGAACGCTGTTCTCAACCCGATTTTATACTTACCCGAGGAGCCTGACCAGACCCGGA 1416
| || ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 1138 CAACAAACGCTGTTCTCAACCCGATTTTATACTTACCCGACGAGCCTGACCCGACCCGAA 1197
Query 1417 GATTCGAAATTCTCACCCCGACTCGAATCCCTAGAATGTACCATTCGGCGTCTCTTCTTC 1476
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1198 GATTCGAAATCCTCACCCCGACTCGAATCCCTAGAATGTACCATGCGGCGTCTCTCCTTC 1257
Query 1477 TGTCAGACGGCAGAGTCTTAGTCGGAGGAAGCAATCCTCATCGAAATTACAATTTCACGG 1536
| || ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1258 TTTCCGACGGTAGAGTTTTAGTCGGAGGAAGCAATCCTCATCGGAATTACAATTTCACGG 1317
Query 1537 CGAGGCCGTACCCAACGGAGCTCAGCCTCGAGGCTTATCTCCCGCGTTACCTGGATCCAC 1596
|||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1318 CGAGACCGTACCCGACGGAGCTCAGCCTCGAGGCTTATCTCCCGCGTTACCTAGATCCGC 1377
Query 1597 AGTACGCACGTGTGAGACCGACGATCATCACGGTGGAGCTCGCCGGGAATATGTTGTACG 1656
||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1378 AGTACGCGCGCGTGAGGCCGACGATAATCACGGTGGAACTCGCCGGGAATATGTTGTACG 1437
Query 1657 GTCAGGCTTTTGCCGTAACGTTCGCGATTCCGGCATTCGGAATGTTCGACGGAGGGGTAT 1716
|||||||||||| ||| || |||||||||||||| ||||| |||||||||||||| | |
Sbjct 1438 GTCAGGCTTTTGGCGTCACATTCGCGATTCCGGCGTTCGGTATGTTCGACGGAGGAGCGT 1497
Query 1717 CGGTGAGGCTCGTGGCGCCGTCGTTCAGCACTCACTCAACGGCGATGAACCAGAGGTTGT 1776
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1498 CAGTGAGGCTAGTGGCGCCGTCGTTCAGCACTCACTCGACGGCGATGAACCAGAGGTTGT 1557
Query 1777 TGGTTTTGCGCGTCAGGCGCGTGAGTCAGTTATCTGTTTTCGCTTATAAAGCTGACGTGG 1836
|||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1558 TGGTCCTGCGCGTGAGGCGCGTGAGTCAGTTATCTGTTTTCGCATATAAAGCTGACGTGG 1617
Query 1837 ACGGGCCTACTAACTCCTACGTGGCACCACCTGGGTATTATATGATGTTCGTGGTTCACC 1896
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1618 AAGGGCCTACTAACTCCTACGTGGCACCGCCTGGGTATTATATGATGTTCGTGGTTCACC 1677
Query 1897 GTGGAATTCCGAGTGTAGCTGTTTGGGTTAAGATTTAAAGCAATCCttt 1945
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GTGGAATTCCGAGTGTAGCTGTTTGGGTTAAGATTTAAAGCAATCCTTT 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74466428975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5