BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14440.1
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920334 jgi|Araly1|920334|scaffold_101615.1 1594 0.0
Ahg484166 jgi|Araly1|484166|fgenesh2_kg.5__158__AT2G02540.1 279 3e-74
> Ahg920334 jgi|Araly1|920334|scaffold_101615.1
Length=991
Score = 1594 bits (863), Expect = 0.0
Identities = 946/984 (96%), Gaps = 13/984 (1%)
Strand=Plus/Plus
Query 352 GCAAAAGGTTTTTGAAGAAGACCCAATTAAAAAAGATGGAAATTGCAAGTCAAGAAGATC 411
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 GCAAAAGGTTTTTGAAGAAGACACAATTTTAAAAGATGGAAATTGCAAGTCAAGAAGATC 60
Query 412 ATGATATGCCCATCCCATTAAACACTACATTTGGTGGTGGTGGTAGTCATGGTCACATGA 471
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 61 ATGATATGCCCATCCCATTAAACACTACA-TT--TGGTGGTGGTAGTCATGGTCACATGA 117
Query 472 T-C--CATCATCATGATCATCATGCTGCTAATTCTGCTCCTCCAACTCACAACAACAACA 528
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TACATCATCATCATGATCATCATGCTGCTAATTCTGCTCCTCCAACTCACAACAACAACA 177
Query 529 ATACTACTCAACCACCTCCAATGCCGTTACATGGTAATGGTCATGGCAACAATTATGatc 588
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 178 TTACTACTCAACCACCACCAATGCCGTTACATGGTAATGGTCATGGAAACAACTATG--- 234
Query 589 atcatcatcatcaagatcctcatcatGTTGGTTACAACGCTATCATCAAGAAGCCTATGA 648
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 235 ATCATCATCATCAAGATCCTCATCATGTGGGTTACAACGCCATCATCAAGAAGCCTATGA 294
Query 649 TAAAGTACAAGGAGTGTCTCAAGAACCATGCAGCAGCTATGGGAGGCAATGCTACTGATG 708
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 295 TAAAGTACAAGGAGTGTCTCAAGAACCATGCAGCAGCTATGGGAGGCAATGCCACTGATG 354
Query 709 GGTGTGGAGAGTTTATGCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGCTCAG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGTGTGGAGAGTTTATGCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGCTCAG 414
Query 769 CTTGCAATTGCCACAGGAACTTCCATAGAAAAGAAGTGGAAGGCGAACTC-GCAGCCACC 827
|||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 415 CTTGCAATTGCCACAGAAACTTCCATAGAAAAGAAGTGGAAGGCGAAC-CGGCAGCTACC 473
Query 828 GCCATGTCCCCTTACCACCAACAC-CCTCCACACCGAAAACTCATGCTCAACCACCAAAA 886
||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 474 GCCATTTCCCCTTACCACCAAC-CGCCTCCACACCGAAAACTCATGCTCAACCACCACAA 532
Query 887 GATCAGATCAGCTATGCCACACCAAATGATCATGCCCATTGGAGTCTCTAACTACCGGTA 946
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GATCAGGTCAGCCATGCCACACCAAATGATCATGCCCATTGGAGTCTCTAACTACCGGTA 592
Query 947 CATGCATAACAACTCCGAGTCCGAGGACTTTATGGAGGAAGATGGCGTAACCACCGCATC 1006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 593 CATGCATAACAACTCCGAGTCCGAGGACTTTATGGAGGAAGATGGCGTAACCACCGCAGC 652
Query 1007 TAGATCGCTACCAAACCTGCCATACAACCAGAAGAAGAGGTTCAGGACAAAGTTCACGCC 1066
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 653 TAGATCGCTACCAAACCTGCCATACAACCAGAAGAAGAGGTTTAGGACAAAGTTCACGCC 712
Query 1067 GGAACAGAAGGAGAAGATGCTTAGTTTTGCTGAGAAAGTTGGGTGGAAAATACAAAGGCA 1126
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 713 GGAACAAAAGGAGAAGATGCTGAGTTTTGCTGAGAAAGTTGGATGGAAAATACAAAGGCA 772
Query 1127 AGAAGATTGTGTTGTTCAAAGGTTTTGTGAAGAGATTGGAGTGAAGAGAAGAGTGCTTAA 1186
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 773 AGAAGATTGTGTTGTTCAAAGGTTTTGCGAGGAGATTGGAGTGAAGAGAAGAGTCCTTAA 832
Query 1187 GGTTTGGATGCACAACAACAAGATCCATTTCTCCAAGAAGAACAACATTAACCTCGAAGA 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GGTTTGGATGCACAACAACAAGATCCATTTCTCCAAGAAGAACAACATTAACCTCGAAGA 892
Query 1247 CAACGACAACGAAAAGATCAACAATCTCAACAATGTTGATCTGTCCGGTAATAACGACAT 1306
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 893 CAACGACAACGAAAAGATCAACAATCTGAACAATGTTGATCTGTCCGGTAATAACGACAT 952
Query 1307 GACTAAGATCGTCCCATGATATAA 1330
||||||||||||||||||||||||
Sbjct 953 GACTAAGATCGTCCCATGATATAA 976
> Ahg484166 jgi|Araly1|484166|fgenesh2_kg.5__158__AT2G02540.1
Length=1081
Score = 279 bits (151), Expect = 3e-74
Identities = 632/849 (74%), Gaps = 93/849 (11%)
Strand=Plus/Plus
Query 448 GTGGTGGTAGTCATGGTCACATGATCCATCATCATGATCATCATGC-TGCTAATTCTGCT 506
|||||||| | ||||| ||||||||||||||| | |||||||| | ||| ||||||||
Sbjct 130 GTGGTGGTGGGCATGGGAACATGATCCATCATCTTCATCATCAT-CATGCCAATTCTGCA 188
Query 507 CC-TCCAACTCACAACAACAACAATACTACTC-AA-CCACCT-CCAATGC-CGTTACATG 561
|| | || ||| |||| | || |||| || || ||| || | | | | | | | |||
Sbjct 189 CCAT-CATCTCTCAAC-ATGAC--TACT--TCAAACCCA-CTACTAGT-CTCCTCAAATG 240
Query 562 GTAATGGTCATGGCAACAATTATGatca---tcatcatcatca----agat-cctcatca 613
||||||||| |||||| ||| |||| || |||||||||||| | | | |||||
Sbjct 241 GTAATGGTCTTGGCAAAAATCATGAACATTCTCATCATCATCATGTGGGTTACAACATCA 300
Query 614 t-GTTGGTTACAAC-GCTATC-A-TCA-AGAAGCC--T-ATGATAAAGTACAAGGAGTGT 665
| || | ||||| | ||| | | ||||||| | |||| ||||||||||| ||
Sbjct 301 TGGTCAGCAACAACAAC-ATCAAGAAAGAGAAGCCTGTGGTGATCAAGTACAAGGAATGC 359
Query 666 CTCAAGAACCATGCAGC-AGCTATGGGAGGCAATGCTACTGATGGGTGTGGAGAGTTTAT 724
|| ||||| |||||||| | | |||||||||||||| | |||||| ||||||||||||||
Sbjct 360 CTAAAGAATCATGCAGCTA-CCATGGGAGGCAATGCCATTGATGGTTGTGGAGAGTTTAT 418
Query 725 GCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGCTCAGCTTGCAATTGCCACAG 784
||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||| ||
Sbjct 419 GCCAAGTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGTTCAGCTTGCAACTGCCATAG 478
Query 785 GAACTTCCATAGAAAAGAAGTGGAAGGCGAACTCGCAGCCACCGCCATGTCCCCTTACC- 843
||||||||||||| |||| | ||||| |||| | ||| | | ||||||||||
Sbjct 479 AAACTTCCATAGAAGAGAAATTGAAGGTGAACAAAAA---ACCTTCTTTTCCCCTTACCT 535
Query 844 -A-CCAACACC--CT-CCACA-CCG-A-A-AA--CTCATGCTCAACCACCAAAA-GATCA 891
| ||| |||| || || | ||| | | || |||||| || ||||| || | |||||
Sbjct 536 CAACCACCACCAACTACCTCCGCCGCAGAGAAAACTCATGTTCCACCAC-AAGATGATCA 594
Query 892 GATCAGCTATG-CCACACCAAATGATCATGCCCA-TTGGAGTCTCTAACTACCGGTACAT 949
|||| | || ||||| |||||||| ||||| | |||| || | | | |||| | |
Sbjct 595 AATCACC-ATTACCACAACAAATGATAATGCC-AGTTGGCGT-T--A-CAACCG---C-T 644
Query 950 GCATAACAACTCCGAGTCCGAGGA-CTTTATGGAGGAAGATGGCGTAACCACC--G-CAT 1005
| || |||||| ||||| ||||| ||| ||||||||||| |||| | | | | |||
Sbjct 645 GGATC-CAACTCAGAGTCAGAGGATCTT-ATGGAGGAAGAGGGCGGAGGAAGCTTGACAT 702
Query 1006 -CTAG-ATCG-CTACCA--A--ACC-T-GCC-A-T-ACA-AC-----CAGAAGAAGAGGT 1047
| | | | | |||| | ||| | | | | || || |||||||||||||
Sbjct 703 TCCGGCAACCACCACCACCACCACCATCGTATAGTTACGGACATAATCAGAAGAAGAGGT 762
Query 1048 TCAGGACAAAGTTCACGCCGGAACAGAAGGAGAAGATGCTTAGTTTTGCTGAGAAAGTTG 1107
| ||||||||||| || | || || ||||| |||||| | |||||||| |||| ||||
Sbjct 763 TTAGGACAAAGTTTACTCAAGAGCAAAAGGAAAAGATGATGAGTTTTGCGGAGAGAGTTA 822
Query 1108 GGTGGAAAATACAAAGGCAAGAAGATTGTGTTGTTCAA-AGGTTTTGTGAAGAGATTGGA 1166
| ||||| || || || ||||| || | |||||||||| || ||| || ||||||| |||
Sbjct 823 GTTGGAAGATTCAGAGACAAGAGGAATCTGTTGTTCAACAGCTTT-GTCAAGAGATCGGA 881
Query 1167 GTGAAGAGAAGAGTGCTTAAGGTTTGGATGCACAACAACAAGATC-CATT-TCTCCAAGA 1224
| | ||||||||| ||||| |||||||||||||||||||| | | || | | |||||||
Sbjct 882 ATTAGGAGAAGAGTTCTTAAAGTTTGGATGCACAACAACAA-A-CACAATCTATCCAAGA 939
Query 1225 AGAACAACA 1233
||| |||||
Sbjct 940 AGAGCAACA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59077969995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5