BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14455.1 Length=582 Score E Sequences producing significant alignments: (Bits) Value Ahg920336 jgi|Araly1|920336|scaffold_101617.1 346 1e-94 > Ahg920336 jgi|Araly1|920336|scaffold_101617.1 Length=315 Score = 346 bits (187), Expect = 1e-94 Identities = 254/284 (89%), Gaps = 14/284 (5%) Strand=Plus/Plus Query 118 AAATCATGAAGTTCTCTGCAAAAACAATGAAGATTGCTCTGTTTCTTCTTCTTCTAATAA 177 |||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 17 AAATCATGAAGTCCTCTGCGAAAACAATGAAGATTGCTCTGTTTCTTCTTCTTTTAATAA 76 Query 178 CCGTCCAAACAATTGCCAGACCGTTCACCGACGAAACCGATAAAATCCAAACAGTTCCAT 237 |||||||||||||||||||||||||||| ||| |||||| |||||||| || |||||||| Sbjct 77 CCGTCCAAACAATTGCCAGACCGTTCACTGACAAAACCGGTAAAATCCCAAGAGTTCCAT 136 Query 238 ATCCTCCTTCAAAACATACTCCTCCAGGTTATCATGGTCATTCACCACCAGGA-AAAGGC 296 | ||||||||||| || |||||||||| ||||||||| | | ||||| || || || Sbjct 137 CTTCTCCTTCAAAAGATCCTCCTCCAGG---TCATGGTCA-T-A-CACCAAGACCAA-GC 189 Query 297 CCAACAGTTCCATCTTCTCCTGCAAAAGATCCTCCTCCTCCAGGACATGGTCATCATCCA 356 |||||||||||||||||||||||||||||||||||||| ||| |||||||||| | | Sbjct 190 CCAACAGTTCCATCTTCTCCTGCAAAAGATCCTCCTCC---AGGTCATGGTCATC--C-A 243 Query 357 CCAAGCCAAGCCGCTAACGACAAGAACACCATGTTTATGCCTGA 400 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 244 CCAAGCCAAGCCGCTAACGACAGGAACACCATGTTTATGCCTGA 287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21290818662 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5