BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14455.1

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920336 jgi|Araly1|920336|scaffold_101617.1                        346    1e-94


> Ahg920336 jgi|Araly1|920336|scaffold_101617.1
Length=315

 Score =  346 bits (187),  Expect = 1e-94
 Identities = 254/284 (89%), Gaps = 14/284 (5%)
 Strand=Plus/Plus

Query  118  AAATCATGAAGTTCTCTGCAAAAACAATGAAGATTGCTCTGTTTCTTCTTCTTCTAATAA  177
            |||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct  17   AAATCATGAAGTCCTCTGCGAAAACAATGAAGATTGCTCTGTTTCTTCTTCTTTTAATAA  76

Query  178  CCGTCCAAACAATTGCCAGACCGTTCACCGACGAAACCGATAAAATCCAAACAGTTCCAT  237
            |||||||||||||||||||||||||||| ||| |||||| |||||||| || ||||||||
Sbjct  77   CCGTCCAAACAATTGCCAGACCGTTCACTGACAAAACCGGTAAAATCCCAAGAGTTCCAT  136

Query  238  ATCCTCCTTCAAAACATACTCCTCCAGGTTATCATGGTCATTCACCACCAGGA-AAAGGC  296
             | ||||||||||| || ||||||||||   ||||||||| | | ||||| ||  || ||
Sbjct  137  CTTCTCCTTCAAAAGATCCTCCTCCAGG---TCATGGTCA-T-A-CACCAAGACCAA-GC  189

Query  297  CCAACAGTTCCATCTTCTCCTGCAAAAGATCCTCCTCCTCCAGGACATGGTCATCATCCA  356
            ||||||||||||||||||||||||||||||||||||||   ||| ||||||||||  | |
Sbjct  190  CCAACAGTTCCATCTTCTCCTGCAAAAGATCCTCCTCC---AGGTCATGGTCATC--C-A  243

Query  357  CCAAGCCAAGCCGCTAACGACAAGAACACCATGTTTATGCCTGA  400
            |||||||||||||||||||||| |||||||||||||||||||||
Sbjct  244  CCAAGCCAAGCCGCTAACGACAGGAACACCATGTTTATGCCTGA  287



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21290818662


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5