BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14460.1
Length=3742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920337 jgi|Araly1|920337|scaffold_101618.1 4471 0.0
Ahg484163 jgi|Araly1|484163|fgenesh2_kg.5__155__AT2G02480.1 1642 0.0
> Ahg920337 jgi|Araly1|920337|scaffold_101618.1
Length=3434
Score = 4471 bits (2421), Expect = 0.0
Identities = 2727/2875 (95%), Gaps = 20/2875 (1%)
Strand=Plus/Plus
Query 675 TGCGAAAGCTAGGAACTTTCCAAGTCATCATCTTCACGTTGCATCAGGTTTAAGTGTAGT 734
||||||||||||||| |||||||||||||||||||||| |||||| | | |
Sbjct 579 TGCGAAAGCTAGGAAATTTCCAAGTCATCATCTTCACGCTGCATC--------G-G--CT 627
Query 735 GAGAGATGAATCTGATGAAACAGAGGATTTTAGCAACTCTGAGAATTTCCCCACTAAAGT 794
||| | | ||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 628 GAG-G-T--ATCAGATGAAACAGAGGATTTTAGCAACTCTGAGAA--T-CCCACTAAAGT 680
Query 795 ATCATCTCCTTTGCTTTTGAAACTAAAGCGCAAGAACTGGTCACGTTCTTCTTCTAAGTT 854
|||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 681 TTCATCTCCTTTGCTTTCGAAACTAAAGCACAAGAACTGGTCACGCTCTTCGTCTAAGTT 740
Query 855 CCTGAGAGGTACTAGTAAGAGAGAGGATTCTTCTCATACTTGTAACAGTACACCTGCATT 914
| |||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 741 CTTGAGAGCTACTAGTAAGAGAGAGGATTCTTCCCTTACTTGTAACAGTACACCTGCATT 800
Query 915 GTCGACTAGCTCATATAATATGTATGGTATCCGTAATCCTAGCACTGTTGGATCTTGGGA 974
||| ||||||||||| ||||||||||||||| ||||||||||||| || || || |||||
Sbjct 801 GTCAACTAGCTCATACAATATGTATGGTATCGGTAATCCTAGCACCGTCGGGTCGTGGGA 860
Query 975 GGATGGTGATGATGAGTTGGATGATGATAACTTGGATTTTAAAGGGAGACAAGGTTGTGG 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GGATGGTGATGATGAGTTGGATGATGATAACTTGGATTTTAAAGGGAGACAAGGTTGTGG 920
Query 1035 GATTCCTTTTTATTGGACTAAGAGGAATCTGAAACATAGAGGTGGATGTAGGAGTTGTTG 1094
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 921 GATTCCTTTTTATTGGACCAAGAGGAATCTGAAGCATAGAGGTGGATGTAGGAGTTGTTG 980
Query 1095 CTCTCCTTCGTTTTCGGATACTCTTAGGAGGAAAGGAAGTAGCATTTTATGTGGGAGTCA 1154
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 981 CTCACCTTCGTTTTCGGATACTCTTAGAAGGAAAGGAAGTAGCATTTTATGCGGGAGTCA 1040
Query 1155 ATCTGTGTATCGTAGACATAGGCATTCCTCTGGGAGGTTTAATAAACAGAAGCTTGCTTT 1214
||| | |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1041 ATCGGCGTATCGTAGACATAGGCATTCCTCTGGGAGATATAATAAACAGAAGCTTGCTTT 1100
Query 1215 AAGAAGTGCAAAAGGTGTTTTACCTTTGCTCAAATATGGTGGTGATAGTAGAGGAGGGTC 1274
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AAGAAGTGCAAAGGGTGTTTTACCTTTGCTCAAATATGGTGGTGATAGTAGAGGAGGGTC 1160
Query 1275 ATCTATAGGAATTGGGTATAGTGATGATGATCTTTCTACTGATTTTGGAGAGATTGATTT 1334
||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1161 ATCTATAGGAATTGGGTGTAGTGATGATGATCTTTCTACTGATTTCGGAGAGCTTGATTT 1220
Query 1335 AGAAGCTCAGAGTAGATTAGATGGGAGGAGATGGTCTAGTTGTTGTAAGAGTCAGGATgg 1394
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1221 AGAAGCTCAAAGTAGATTAGATGGGAGGAGATGGTCTACTTGTTGTAAGAGTCAGGATGG 1280
Query 1395 agaaagagaagaagaggaagaaggaggaagTACACCGGAAAGTATTCAGAGCTTGAGCCA 1454
||||||||||| |||||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 1281 GGAAAGAGAAGAGGAGGAAGAAGAAGGAAGTACACCCGAAAGTATCCAGAGCTTGAGCCA 1340
Query 1455 AAAGTACAAGCCAATGTTCTTTGATGAACTGATTGGGCAGAGTATAGTTGTTCAATCACT 1514
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1341 AAAGTACAAGCCAATGTTCTTTGATGAACTGATTGGGCAGAGTATAGTTGTTCAGTCGCT 1400
Query 1515 AATGAACGCTGTGAAGAAGGGTAGGGTTGCTCATGTTTATCTTTTCCAAGGTCCTAGAGG 1574
||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1401 AATGAGCGCTGTGAAAAAGGGTAGGATTGCTCATGTTTATCTTTTTCAAGGTCCTAGAGG 1460
Query 1575 TACTGGGAAGACATCTACCGCGAGAATTCTTTCGGCCGCCTTGAATTGTGATGTGGTCAC 1634
||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||||||
Sbjct 1461 AACTGGGAAGACATCTACCGCGAGAATTCTTTCGGCTGCCCTGAACTGTGATCTGGTCAC 1520
Query 1635 TGAAGAAATGAAACCTTGTGGGTACTGCAAAGAATGTAGTGATTACATGCTAGGGAAAAG 1694
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1521 TGAAGAAATGAAACCTTGTGGGTATTGCAAAGAATGCAGTGATTACATGCTAGGGAAAAG 1580
Query 1695 TAGGGATTTATTGGAACTTGATGCTGGTAAGAAGAATGGAGCCGAGAAAGTTAGGTACCT 1754
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1581 TAGGGATTTGCTGGAACTTGATGCTGGTAAGAAGAATGGAGCTGAGAAAGTTAGGTACCT 1640
Query 1755 TTTGAAAAAATTGTTGACATTAGCTCCTCAGAGTTCTCAAAGATACAAGGTTTTTGTTAT 1814
| |||||||| |||||||||||||||| |||| ||||| |||||||||||||||||| ||
Sbjct 1641 TATGAAAAAACTGTTGACATTAGCTCCACAGATTTCTCCAAGATACAAGGTTTTTGTGAT 1700
Query 1815 AGATGAGTGTCATTTATTACCATCTAGGACTTGGCTATCTTTACTCAAGTTTCTTGAGAA 1874
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1701 AGATGAGTGTCATTTATTACCATCTAGGACATGGCTATCTTTACTCAAGTTTCTTGAGAA 1760
Query 1875 CCCTCTGCAGAAATTTGTCTTTGTATGTATCACGACTGACCTTGACAATGTTCCTCGGAC 1934
||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 1761 CCCTCTGCAGAAAGTTGTCTTCATATGTATAACTACTGACCTTGACAATGTTCCTCGGAC 1820
Query 1935 CATTCAGTCAAGGTGCCAGAAGTACATCTTCAACAAAGTCAGAGATGGTGACATTGTTGT 1994
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1821 CATTCAGTCAAGGTGCCAGAAGTACCTCTTCAACAAAGTCAGAGATGGTGACATTGTTGT 1880
Query 1995 GAGACTAAGGAAGATTGCTTCAGATGAAAATCTAGATGTGGAATCACAGGCGTTGGACCT 2054
|||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct 1881 GAGACTAAGGAAAATTGCTTTAGATGAAAATCTGGATGTGGAATCACAGGCTTTGGACCT 1940
Query 2055 GATTGCTTTGAATGCTGATGGCTCGCTTCGAGATGCTGAAACCATGTTAGAGCAGTTGAG 2114
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1941 GATTGCTTTGAATGCTGATGGCTCGCTTCGAGATGCTGAAACCATGTTGGAGCAGTTGAG 2000
Query 2115 TTTGATGGGAAAACGAATCACCGTTGATCTTGTAAATGAGCTTGTTGGTGTTGTTTCAGA 2174
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2001 TTTGATGGGAAAACGAATCACCGTTGATCTTGTAAATGAGCTTGTGGGTGTTGTTTCAGA 2060
Query 2175 TGATAAATTGCTTGAACTCTTGGAATTAGCGTTGTCTTCTGACACGGCAGAGACCGTTAA 2234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 TGATAAATTGCTTGAACTCTTGGAATTAGCGTTGTCTTCTGACACGGCAGAGACCGTTAA 2120
Query 2235 GAAAGCTAGAGAGTTACTGGACTTGGGAGCTGATCCAATACTCATGATGTCTCAACTAGC 2294
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2121 GAAAGCTAGAGAGTTACTGGACTTAGGAGCTGATCCAGTACTCATGATGTCTCAACTAGC 2180
Query 2295 CAGTCTTATCATGGATATCATTGCTGGAGCATACAAGGCTTTGGACGAAAAATACAGCGA 2354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2181 CAGTCTTATCATGGATATCATTGCTGGAGCATACAAGGCTTTGGACGAAAAATACAGCGA 2240
Query 2355 AGCCTTTCTTGATAGAAGGAACTTGACTGAAGCGGATTTGGAGAGACTAAAGCATGCTTT 2414
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 2241 AGCCTTTCTTGATAGAAGGAACTTGACTGAAGCTGATTTGGAGAGACTAAAGCATGCTCT 2300
Query 2415 GAAACTTCTTTCTGAGGCTGAGAAGCAGCTTAGAGTTTCTACTGATCGTTCAACATGGTT 2474
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2301 GAAACTTCTTTCTGAAGCTGAGAAACAGCTTAGAGTTTCTACTGATCGTTCAACATGGTT 2360
Query 2475 CATAGCTACCTTGCTTCAGCTTGGTTCAATGCCTTCTCCTGGAACCACACATACCGGTAG 2534
||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 2361 CATAGCTACCTTGCTGCAGCTTGGTTCAGTGCCTTCTCCTGGAACCACACATACTGGTAG 2420
Query 2535 CAGTAGAAGGCAAAGCTCTAGAGCAACTGAAGAAAGCATTTCAAGAGAAGTTATTGCTTA 2594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2421 CAGTAGAAGGCAAAGCTCTAGAGCAACTGAAGAAAGCATTTCAAGAGAAGTTATTGCTTA 2480
Query 2595 CAAACAGAGATCAGGCCTTCAATGTAGTAATACAGCCTCCCCAACTTCCATAAGAAAAAG 2654
||||||||||||||| ||||||||||||||| |||| |||||||| || || ||||||||
Sbjct 2481 CAAACAGAGATCAGGTCTTCAATGTAGTAATTCAGCATCCCCAACATCTATGAGAAAAAG 2540
Query 2655 TGGAAACCTCGTTCGTGAAGTGAAATTGTCCTCCTCTTCTAGCGAAGTTTTAGAGAGTGA 2714
|||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 2541 TGGAAACCTCGTTCATGAAGTGAAATTGTCCTCCTCATCTAGGGAAGTCTTAGAGAGTGA 2600
Query 2715 CACTTCCATGGCCTCACATGACGATACAACGGCAAGCACCATGACGCTTACTTGCAGAAA 2774
|||||||| ||||| ||||||||||||||| ||||| ||||||| ||||| ||||||||
Sbjct 2601 GACTTCCATTGCCTCGCATGACGATACAACGACAAGCTCCATGACCCTTACGTGCAGAAA 2660
Query 2775 TTCAGAGAAACTAAATGATATTTGGATAAAGTGTGTAGATAGATGTCATTCAAAGACATT 2834
||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||| ||
Sbjct 2661 TTCAGAGAAACTAAATGATATCTGGATAAAGTGTGTGGACAGATGTCATTCGAAGACGTT 2720
Query 2835 GAAGCAGCTTCTATATGCTCATGGGAAGCTTTTATCTATCAGTGAAGTTGAAGGTATTCT 2894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2721 GAAGCAGCTTCTATATGCTCATGGGAAGCTTTTATCTATCAGTGAAGTTGAAGGTATCCT 2780
Query 2895 AGTTGCTTATATTGCATTTGGAGAAGGAGAGATCAAAGCGAGAGCTGAAAGGTTTGTAAG 2954
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2781 AGTTGCTTATATTGCATTTGGAGAAAGAGAGATCAAAGCTAGAGCTGAAAGGTTTGTAAG 2840
Query 2955 CAGTATCACAAACTCGATTGAAATGGTACTACGGCGAAACGTAGAGGTCAGGATAATCCT 3014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2841 CAGTATCACAAACTCGATTGAAATGGTACTACGGCGAAACGTAGAGGTCAGGATAATCCT 2900
Query 3015 CTTGTCTGAAACTGAGTTACTCAACTCCAAGCAGACCAGACAAATAGCAGTGACAACTAG 3074
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2901 CTTGTCTGAAACTGAATTACTCAACTCCAAGCAGACCAGACAAACAGCAGTGACAACTAG 2960
Query 3075 TTCATATACTGAAAGTGGGAATGAGATTCCAATGAAAAGGATTGAAGCAATCATCCAAGA 3134
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2961 TTCAGATAATGAAAGTGGGAATGAGATTCCAATGAAAAGAATTGAAGCAATCATCCAAGA 3020
Query 3135 ACAGAGATTAGAAACTGAGTGGTTACAGAAGACTC-CTGGTTCACAAGGCCGGTTAAAAC 3193
||||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 3021 ACAGAGACTAGAAACTGAGTGGCTACAGAAGA-TCTCTGGTTCACAAGGCCGGTTAAAAC 3079
Query 3194 CCGAAAGGAACCAAATTCTACCTCAAGAAGACACCAATGGAGTTAAAGTCTTGAAGATTT 3253
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3080 CCGAAAGGAATCAAATTCTACCTCAAGAAGACACCAATGGAGTTAAAGTTTTGAAGATTT 3139
Query 3254 GTGAAATGGGTGAGTTTCAGGAGAATCAGAGTGGTAAAAGAATGGAACATTGTCCTGTTT 3313
||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||
Sbjct 3140 GTGAAATGGGTGAGTTTAAGGAGAATCAGACTGGTAAAAGAATGGAGCATTGTCCTGTTT 3199
Query 3314 CTCCAAGCTTACTACACAATAGTAACTTCACAAACAACAAAGACAATCTAGGATATGAAT 3373
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3200 CTCCGAGCTTACTACACAATAGCAACTTCACAAACAACAAAGACAATCTAGGATATGAAT 3259
Query 3374 CAGAATCAGGGAGAGGAGTTTGCAGTCTGCTTTTCTGTTGGAACACACAAAAGTCTCCAA 3433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3260 CAGAATCAGGGAGAGGAGTTTGCAGTCTGCTTTTCTGTTGGAACACACAAAAGTCTCCAA 3319
Query 3434 GAAGAACCAAAATCAAAGGGACTTCTATGCGATCACGAAGAAGTCGAGAGAGACGTTTCT 3493
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3320 GAAGAACCAAAATCAAAGGGACTTCTGTGCGATCACGAAGAAGTCGAGAGAGACGTTTCT 3379
Query 3494 CCTTGTTCAGTGCATGTGCTAGGCCAAGGAAGTAAGAAAAGTTACTATGAGATAT 3548
|||||||||||| ||||||||||||| ||||||||||||||||||| || |||||
Sbjct 3380 CCTTGTTCAGTGGATGTGCTAGGCCACGGAAGTAAGAAAAGTTACTGTGTGATAT 3434
Score = 520 bits (281), Expect = 4e-146
Identities = 394/445 (89%), Gaps = 21/445 (5%)
Strand=Plus/Plus
Query 165 GAAAGAAAGAAAAATGTCGGGTTTAAGGATTTCGGATCCGAGCAAATTGCATCTGAAGAA 224
||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 9 GAAGGAAAAAAAAATGTCGGGTATAAGGATTTCGGATCCGAGCAAATTGCATCTGAAGAA 68
Query 225 GGAGCTTACTCATATCAGGAAAGTTGCTTCTAAAGGTTTACGCGATCCTGGAACCACTTC 284
|||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 69 GGAGCTTACTCAAATCAGGAAAGTTGCTGCTAAGGGTTTACGCGATCCCGGAACCACTTC 128
Query 285 CTCATGGAAATCTCCTCTTACTTCCTCGAGATTCGTCGTTGAGCCGCCGG---CGAGCAA 341
||| |||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||
Sbjct 129 CTCCTGGAAATCTCCTCTTACTTCGTCGAGATCCGTCGCTGAGCCGCCGGTGACGAGCAA 188
Query 342 CAACGTCGAGATTCTCAGTAACAATCAGTTAGATTCTCAGTTTCCGAGTAGTCGAGTCTT 401
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 189 GAACGTCGAGATTCTCAGTAACAATCAGTTGGATTCTCAGTTTCCAAGTAGTCGAGGATT 248
Query 402 TGGGAATAACGGGAAGGAGAAGGAGAAGAAGGTGTTTTTGTATAATTGGAAGACTCAGAG 461
|||||| || | | | | ||||||||||||||||||||| ||||||||||||||||
Sbjct 249 TGGGAA----GG-A-G-A-A-GGAGAAGAAGGTGTTTTTGTACAATTGGAAGACTCAGAA 299
Query 462 AACTTCAAGCGAGAAGACTGAGGGTGAAGATGAAACGTCTTGGATCCAAGCTAGTCTCAa 521
|||||| |||||||||| ||| |||||||| | ||||||||||||||||| |||||||||
Sbjct 300 AACTTCGAGCGAGAAGAGTGATGGTGAAGACGGAACGTCTTGGATCCAAGGTAGTCTCAA 359
Query 522 tgatgatgatgacgatgatgatgatgTGAGTGACGCGAGGAATGGTGGAGATTCGTGTCT 581
|||||||||||| | ||| | ||| | ||| || || | ||| ||||||||||||||
Sbjct 360 TGATGATGATGATG-TGA-G-TGACGCGAG-GAA-CG-G---TGGAGGAGATTCGTGTCT 410
Query 582 TGAGGAAACTCGATCTGCTTCGATG 606
|| ||||||||||||||||||||||
Sbjct 411 TGGGGAAACTCGATCTGCTTCGATG 435
Score = 75.0 bits (40), Expect = 4e-12
Identities = 47/50 (94%), Gaps = 1/50 (2%)
Strand=Plus/Plus
Query 611 GAAAGAGTGGTTTTATCAAGAAGAAGAGTAAGGAATTGGATTTGAGTATC 660
|||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 488 GAAAGAATGGTTTTAGCAAGAAGAAGAGTAAGGAATTGGATTTGA-TATC 536
> Ahg484163 jgi|Araly1|484163|fgenesh2_kg.5__155__AT2G02480.1
Length=4042
Score = 1642 bits (889), Expect = 0.0
Identities = 1592/1918 (83%), Gaps = 102/1918 (5%)
Strand=Plus/Plus
Query 797 CATCTCCTTTGCTTTTGAAACTAAAGC-GCAAGAACTGGTCACGTTCTTCTTCTAAGTTC 855
|||||||||||||| ||| || |||| | |||||||||||||||||||| || || ||
Sbjct 881 CATCTCCTTTGCTTAAGAAGCTGAAGCAG-AAGAACTGGTCACGTTCTTCATCAAAATTG 939
Query 856 CTGAGAGGTACTAGTAAG-AGAGAGGATTCTTC-TCATACTTGTAACAGTACACCTGCAT 913
|||||| || || | || | |||||||||||| | ||| | ||| |||||||| || |
Sbjct 940 TTGAGAGCTAATAAT-AGAAAAGAGGATTCTTCAT-GTACGTATAATAGTACACCGGCTT 997
Query 914 TGTCGACTAGCTCATATAATATGTATGGTATCCGTAATCCTAGCACTGTTGGATCTTGGG 973
| || |||||||| ||||||||||||| | | |||||||| |||||||||||||||||||
Sbjct 998 TATCCACTAGCTCGTATAATATGTATGCTGTTCGTAATCCAAGCACTGTTGGATCTTGGG 1057
Query 974 A--G------GA--T-G--G--TGATGATGA-GTTG-GAT-GATGATAACTTGGATTTTA 1015
| | || | | | ||||| ||| | || | | |||||||||||||| ||||
Sbjct 1058 ATGGTACCACGACTTCGCTGAATGATGGTGATGATGAGTTGGATGATAACTTGGA-TTTA 1116
Query 1016 -AAGGGAGACAAGGTTGTGGGATTCCTTTTTATTGGACTAAG-AGGAATCTGAAACATAG 1073
|||||| ||||||||||| ||||| | ||||||||| ||| ||| ||||||||||
Sbjct 1117 CCAGGGAGGCAAGGTTGTGGCATTCCGTGTTATTGGACGAAGAAGG-CGATGAAACATAG 1175
Query 1074 AGGTGGATGTAGGAGTTGTTGCTCTCCTTCGTTTTCGGATACTCTTAG-GAGGAA-AGGA 1131
||||||||| || |||||||| ||||| ||||||||||||||| || | || ||| |||
Sbjct 1176 AGGTGGATGCAGAAGTTGTTGTTCTCCATCGTTTTCGGATACT-TT-GAGAAGAACCGGA 1233
Query 1132 AGTAGCATTTTATGTGGGAGTCAATCTGTGTATCGTAGAC---ATAGGCATTCCTCTGGG 1188
||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||| ||
Sbjct 1234 AGTAGCATTTTGTGTGGGAGTCAATCTGTGTATCGTAGACATAATAGACATTCTTCT-GG 1292
Query 1189 A-GGTTTAATAAACAGAAGCTTGCTT-TAAGAAGTGCAAAAGGTGTTTTACCTTTGCTCA 1246
| ||| || |||||| || |||||| | ||||||||| |||||||||||||||| ||||
Sbjct 1293 AGGGTATATTAAACAAAAAATTGCTTGT-AGAAGTGCACAAGGTGTTTTACCTTTACTCA 1351
Query 1247 AATATGGTGGTGATAGTAGAGGAGGGTCATCTATAGGAATTGGG-TATAGTGATGATGAT 1305
||||||||||||| ||||||||||||| ||| |||||| ||| | ||||||||| ||
Sbjct 1352 CATATGGTGGTGATGGTAGAGGAGGGTCTTCTTTAGGAACCGGGCT-TAGTGATGACGAG 1410
Query 1306 CTTTCTACTGATTTTGGAGAGATTGATTTAGAAGCTCAGAGTAGATTAGATGGGAGGAGA 1365
||||| || ||| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1411 CTTTCCACCAATTACGGAGAGCTTGATTTAGAGGCTCAGAGTAGATTAGATGGGAGGAGG 1470
Query 1366 TGGTCTAGTTGTTGTAAGAGTCAGGATgg--agaaag-ag-a-ag-aaga--g-gaa-ga 1415
||||||| | ||| || |||||| ||||| | | | | | | ||| | ||| ||
Sbjct 1471 TGGTCTACTAGTTATAGGAGTCAAGATGGTTTGGAGGCTGTAGCGTTAGATGGAGAAGGA 1530
Query 1416 -agga-ggaagTACACCGGAAAGTATTCAG-AGCTTGAGCCAAAAGTACAAG-CCAATGT 1471
| || |||||||||||||||| | || | || || |||||||||||| || |||||||
Sbjct 1531 GAAGACGGAAGTACACCGGAAA-CAATCCGAAGTTTCAGCCAAAAGTAC-AGACCAATGT 1588
Query 1472 TCTTTGATGAACTGATTGGGCAGAGTATAGTTGTTCAATCACTAATGAACGCTGTGAAGA 1531
| ||||| ||| ||||||| ||||||||||| |||||||| ||||||||||||| || |
Sbjct 1589 TTTTTGAGGAATTGATTGGACAGAGTATAGTGGTTCAATCGTTAATGAACGCTGT-AAAA 1647
Query 1532 AGG-GTAGGGTTGCTCATGTTTATCTTTTCCAAGGTCCTAGAGGTACTGGGAAGACATCT 1590
||| ||||| | |||| ||||||||||||||| ||||||||||| ||||| || |||||
Sbjct 1648 AGGAGTAGGATCGCTCCTGTTTATCTTTTCCAGGGTCCTAGAGGAACTGGTAAAACATCA 1707
Query 1591 ACCGCGAGAATTCTTTCGGCCGCCTTGAATTGTGATGTGGTCACTGAAGAAATGAAACCT 1650
||||| |||||| |||| |||||| | || | || ||||| ||||||||||||||| |||
Sbjct 1708 ACCGCAAGAATTTTTTCAGCCGCCCT-AAAT-TG-TGTGGCCACTGAAGAAATGAAGCCT 1764
Query 1651 TGTGGGTACTGCAAAGAATGTAGTGA-TTACATG-CTAGGGAAAAGTAGGGATTTATT-G 1707
||||||||||| ||||| || | ||| || |||| || |||||||||| |||||| || |
Sbjct 1765 TGTGGGTACTGTAAAGAGTGCAATGAGTT-CATGTCT-GGGAAAAGTAAGGATTT-TTGG 1821
Query 1708 GAACTTGATGCTGGTAAGAAGAATGGAGCCGAGAAAGTTAGGTACCTTTTGAAAAAA-TT 1766
|||||||||| | ||| ||||| ||||| || || |||||||||||||| |||||| |
Sbjct 1822 GAACTTGATGGAGCTAATAAGAAGGGAGCTGATAAGGTTAGGTACCTTTT-AAAAAACCT 1880
Query 1767 GTTGAC-ATTAGC-TCCTCAGAGTT-CTCAAAGATACAAGGTTTTTGTTATAGATGAGTG 1823
||| | || | ||| | || || ||||| | |||||||||||||| ||||| |||||
Sbjct 1881 ACCGACGA-TA-CTTCCACGGAATTCCTCAATG-TACAAGGTTTTTGTGATAGACGAGTG 1937
Query 1824 TCATTTATTACCATCT-AGGACTTGGCTATCTTTACTCAAGTTTCTTGAGAACCCTCTGC 1882
|||||| | |||| | | ||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1938 TCATTTGCTGCCAT-TGAAGACTTGGCTGTCTTTTCTTAAGTTTCTTGAGAACCCTCTGC 1996
Query 1883 AGAAATTTGTCTTTGTATGTATCACGACTGACCTTGACAATGTTCCTCGGACCATTCAGT 1942
||||| ||||||| ||| ||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1997 AGAAAGTTGTCTTCATATTTATAACAACTGACCTTGAAAATGTTCCTCGGACCATTCAGT 2056
Query 1943 CAAGGTGCCAGAAGTACATCTTCAACAAAGTCAGAGATGGTGACATTGTTGTGAGACTAA 2002
||||||||||||||| | |||| | ||| ||| |||| |||||| || ||||||||||
Sbjct 2057 CAAGGTGCCAGAAGTTCCTCTTTGATAAACTCAAAGATTCTGACATAGTAGTGAGACTAA 2116
Query 2003 GGAAGATTGCTTCAGATGAAAATCTAGATGTGGAATCACAGGCGTTGGACCTGATTGCTT 2062
||| |||||||||||||||||||||||||| || | || ||||||||||||||||||
Sbjct 2117 AGAAAATTGCTTCAGATGAAAATCTAGATGTAGACTTGCATGCGTTGGACCTGATTGCTA 2176
Query 2063 TGAATGCTGATGGCTCGCTTCGAGATGCTGAAACCATGTTAGAGCAGTTGAGTTTGATGG 2122
|||| || |||||||| ||||||||||||||||| ||||| |||||| |||||||| |||
Sbjct 2177 TGAACGCAGATGGCTCACTTCGAGATGCTGAAACTATGTTGGAGCAGCTGAGTTTGCTGG 2236
Query 2123 GAAAACGAATCACCGTTGATCTTGTAAATGAGCTTGTTGGTGTTGTTTCAGATGATAAAT 2182
||||||| |||||| || ||| ||||| ||||| || ||||||||||||||||| ||||
Sbjct 2237 GAAAACGCATCACCACTGCTCTAGTAAACGAGCTAGTGGGTGTTGTTTCAGATGAAAAAT 2296
Query 2183 TGCTT-GAACTCTTGGAATTAGCGTTGTCTTCTGACACGGCAGAGACCGTTAAGAAAGCT 2241
|| || ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 2297 TG-TTGGAACTCTTGGAATTAGCATTGTCTTCTGACACGGCAGAGACCGTGAAGCGAGCT 2355
Query 2242 AGAGAGTTACTGGA-CTTGGGAGCTGATCCAATACTCATGATGTCTCAACTAGCCAGTCT 2300
|||||||| |||| ||| |||||||| |||||| || ||||||||||||| ||||||||
Sbjct 2356 AGAGAGTTGTTGGACCTT-GGAGCTGACCCAATAGTCTTGATGTCTCAACTCGCCAGTCT 2414
Query 2301 TATCATGGATATCATTGCTGG-AGCATACAAGGCT-TTGGACGAAAAATACAGCGAA-GC 2357
||||||||||||||||||||| | ||||||||| | | || |||||||||||| || ||
Sbjct 2415 TATCATGGATATCATTGCTGGTA-CATACAAGG-TCGTAGATGAAAAATACAGC-AACGC 2471
Query 2358 CTTTCTTGATAGAAGGAACTTGACTGAAGCGGATTTGGAGAGACTAAAGCATGCTTTGAA 2417
||| ||||| |||| |||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct 2472 CTTCCTTGACGGAAGAAACTTGACTGAAGCAGATATGGAGGGATTAAAGCATGCTTTGAA 2531
Query 2418 ACTTCTTTCTGAGGCTGAGAAGCAGCTTAGAGTTTCTACTGATCGTTCAACATGGTTCAT 2477
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 2532 ACTTCTTTCTGAGGCTGAGAAGCAGCTTAGAGTTTCTAATGACCGTTCAACATGGTTCAC 2591
Query 2478 AGCTACCTTGCTTCAGCTTGGTTCAATGCCTTCTCCTGGAACCACACATACCGGTAGCAG 2537
||| || |||||||||||||| |||||||| |||||||| ||||||||||| || || ||
Sbjct 2592 AGCGACTTTGCTTCAGCTTGGGTCAATGCCATCTCCTGGCACCACACATACAGGAAGTAG 2651
Query 2538 TAGAAGGCAAAGCTCTAGAGCAACTGA--A-GA------AAGCATTTCAAGAGAAGTTAT 2588
||||||||||||||||||||||||||| | || |||||||||||| ||||| ||
Sbjct 2652 TAGAAGGCAAAGCTCTAGAGCAACTGACGATGACCCGTCAAGCATTTCAAGGGAAGTGAT 2711
Query 2589 TGCTTACAAACAGAGA-TC--AGGCCTTCAATGTAGTAA-TACAGCCTCCCCAACTTC 2642
||||||||||||||| | ||| ||||| | |||||| | ||| |||||| ||||
Sbjct 2712 GGCTTACAAACAGAGAATAGGAGGGCTTCACTTTAGTAAGTT-AGCATCCCCAGCTTC 2768
Score = 122 bits (66), Expect = 1e-26
Identities = 127/155 (82%), Gaps = 9/155 (6%)
Strand=Plus/Plus
Query 171 AAGAAAAATGTCGGGTTTAAGGA-TTTCGGATCCGAGCAAATTGCATCTGAAGAAGGAGC 229
|||||||||||| |||| | || ||||||||| ||| ||||||||||||||||||||||
Sbjct 195 AAGAAAAATGTCAGGTTCGA-GAGTTTCGGATCTGAGTAAATTGCATCTGAAGAAGGAGC 253
Query 230 TTACTCATATCAGGAAAGTTG-CTTCTAAAGGTTTACGCGATCCTGGAACCACTTCCTCA 288
||||||| ||||| |||| || | | | |||||||||||| || || ||||||||
Sbjct 254 TTACTCAAATCAGAAAAGCTGGCCG-T---GTTTTACGCGATCCAGGCACTACTTCCTCG 309
Query 289 TGGAAATCTCCTCTT-ACTTCCTCGAGATTCGTCG 322
|||||||||||||| | ||| || |||| |||||
Sbjct 310 TGGAAATCTCCTCTCGA-TTCGTCAAGATCCGTCG 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141383883695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5