BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14470.1 Length=1623 Score E Sequences producing significant alignments: (Bits) Value Ahg920338 jgi|Araly1|920338|scaffold_101619.1 2403 0.0 > Ahg920338 jgi|Araly1|920338|scaffold_101619.1 Length=2415 Score = 2403 bits (1301), Expect = 0.0 Identities = 1510/1611 (94%), Gaps = 14/1611 (1%) Strand=Plus/Plus Query 1 ATGTCTCGAGAGCTCACTGTATCTCTTGCCGCCATAGCTTCACAAGCTCTAACATTTC-C 59 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | Sbjct 21 ATGTCTCGAGAGCTCACTGCATCTCTTGCCGCCATAGCTTCACAAGCTCTAACA-TTCAC 79 Query 60 TCAATTAAACCAAATCCATGCTCAGCTCATTGTATTCAATTCTCTTCC-TCGACAAAGCT 118 ||| |||||||||||||||||||| ||||| || | |||||| | ||| ||||||||||| Sbjct 80 TCAGTTAAACCAAATCCATGCTCATCTCATCGTCTCCAATTC-CCTCCATCGACAAAGCT 138 Query 119 ACTGGGCTTCGCGTATAATCAGCTGCTGCACGCGCCTCCGTGCGCCGTCTTACTACACGC 178 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 139 ACTGGGCTTCGCGTTTAATCAGCTGCTGCACGCGCCTCCGTGCGCCGCCTTACTACGCGC 198 Query 179 GGCTCATTTTCGATTCAGTGACATTCCCTAATGTCTTCGTTGTCAATTCCATGTTTAAAT 238 ||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||| || Sbjct 199 GGCTCGTTTTCGATTCAGTGACATTTCCTAATGTCTTCCTCGTCAATTCGATGTTTAGAT 258 Query 239 ACTTCTCGAAGATGGATATGGCGAATGATGTTCTTCGTCTGTATGAACAAAGATCTCGTT 298 ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||| |||| Sbjct 259 ACTTCTCTCAGATGGATATGGCGAATGACGCTCTTCGTCTCTATGAACAAAGATCGCGTT 318 Query 299 GTGGGATTATGCCTGACGCTTTTTCTTTCCCTGTTGTGATCAAATCGGCTGGGAGATTCG 358 | ||||||||||||||| |||||| |||||| |||||||||||||||||||||| ||||| Sbjct 319 GCGGGATTATGCCTGACACTTTTTTTTTCCCGGTTGTGATCAAATCGGCTGGGAAATTCG 378 Query 359 GGATTTTGTTTCAGGCCCTTGTTGAGAAGTTGGGATTTTTTAAGGACCCTTATGTGAGGA 418 || ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 379 GGGTTTTGTTTCAGGCCCTTGTAGAGAAATTGGGATTTTTTAAGGACCCTTATGTGAGGA 438 Query 419 ATGTGATAATGGATATGTATGTGAAGCATGAGTCAGTGGAGAGTGCACGCAAAGTGTTCG 478 ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 439 ATGTGATAATGGATATGTATGCGAAGCATGAGTCAGTGGAGAGTGCACGTAAAGTGTTCG 498 Query 479 ATCAAATTTCTCAGAGAAAGGGTTCTGACTGGAATGTGATGATTTCTGGGTATTGGAAAT 538 |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 499 ATCAAATTACTCAGAGAATGGGTTCTGATTGGAATGTGATGATTTCTGGGTATTGGAAAT 558 Query 539 G-GGGAAACAAGGAGGAAGCTTGTAAGTTGTTCGATATGATGCC--A--G-AGAA-TGAT 591 | ||| |||||||||||||||||||| ||||| ||||||||||| | | | || |||| Sbjct 559 GTGGG-AACAAGGAGGAAGCTTGTAAATTGTTTGATATGATGCCGGAGGGTAAAATTGAT 617 Query 592 GTGGTTTCTTGGACGGTGATGATTACTGGTTTTGCAAAGGTTAAGGATTTGGAAAATGCG 651 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 618 GTGGTTTCTTGGACGGTGATGATTACTGGTTTTGCGAAGCTTAAGGATTTGGAAAATGCA 677 Query 652 AGGAAGTATTTTGATCGGATGCCGGAGAAGAGTGTTGTTTCTTGGAACGCTATGCTTTCA 711 ||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 678 AGGGGGTATTTTGATCGGATGCCGGAGAAGAGCGTTGTTTCTTGGAATGCTATGCTTTCA 737 Query 712 GGTTATGCTCAAAATGGTTTTACAGAGGATGCTCTGAGATTGTTTAACGATATGTTGAGA 771 |||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||| Sbjct 738 GGTTATTCTCAAAATGGGTTTACAGAGGAAACTCTGAGATTGTTTAATGATATGTTGAGA 797 Query 772 CTTGGAGTTAGGCCAAATGAGACCACATGGGTCATTGTTATTTCCGCATGTTCTTTCCGT 831 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 798 CTTGGAGTTAGGCCAAATGAGACCACATGGGTTATTGTTATTTCCGCTTGTTCTTTCCGT 857 Query 832 GCTGATCCTTCCCTCACTCGTTCACTAGTAAAACTGATTGATGAGAAGAGAGTCCGTTTG 891 ||||||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||| Sbjct 858 GCTGATCCTTCCCTCGCTCATTCACTAGTAAAACTGATTGGTGAGAAGAGAATCCGTTTG 917 Query 892 AATTGCTTTGTGAAGACAGCATTGCTTGATATGCATGCTAAGTGCAGAGATATTCAATCT 951 |||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 918 AATTTCTTTGTGAAGACGGCATTGCTTGATATGCATGCTAAGTGCAGAGATATTTTATCT 977 Query 952 GCTAGAAGAATTTTCAACGAGTTAGGTACGCAGAGGAATCTTGTGACTTGGAATGCTATG 1011 ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 978 GCTAGGAGAATTTTCAACGAGTTAGGTACGCAGAAGAATCTTGTCACTTGGAATGCTATG 1037 Query 1012 ATATCTGGATACACTAGAATCGGGGATATGAGTTCGGCTAGGCAGCTTTTTGATACAATG 1071 ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1038 ATATCTGGATATACTAGAATTGGTGATATGAGTTCGGCTAGGCAGCTTTTTGATACAATG 1097 Query 1072 CCTAAGCGAAATGTTGTTTCTTGGAATTCTCTGATAGCTGGGTATGCTCACAACGGGCAA 1131 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1098 CCTAAGCGAAATGTTGTTTCTTGGAATTCGGTGATAGCTGGGTATGCTCACAACGGACAA 1157 Query 1132 GCTGCACTAGCCATTGAGTTTTTCGAAGATATGATTGATTATGGAGATTCCAAACCGGAT 1191 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1158 CCTGCACTAGCCATTGAGTTTTTCGAAGATATGATTGATTATGGAGATTCCAAACCGGAT 1217 Query 1192 GAAGTAACAATGATTAGTGTTCTCTCGGCTTGTGGACACATGGCTGATCTAGAATTGGGT 1251 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1218 GAAGTAACAATGATTAGTGTTCTCTCGGCTTGTGGACACATGGGTGATCTAGAATTGGGT 1277 Query 1252 GATTGCATTGTAGATTACATTCGTAAGAACCAAATCAAGCTTAATGATTCAGGATACAGG 1311 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1278 GATTGCATTGTAGATTACATTGGTAAGAAGCAAATCAAGCTTAATGATTCAGGATACAGG 1337 Query 1312 TCTTTGATCTTCATGTATGCTAGGGGTGGAAACCTGTGGGAAGCAAAACGGGTGTTTGAC 1371 || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1338 TCATTGATCTTCATGTATGCAAGGTGTGGAAACCTGTGGGAAGCAAAACGGGTGTTTGAC 1397 Query 1372 GAAATGAAGGAAAGAGATGTTGTCTCTTATAACACTTTATTCACAGCTTTTGCAGCTAAC 1431 ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 1398 GAAATGAAGGAAAGAGATGTTGTCTCTTATAACACGTTATTCTCAGCTTTTGCAGCTAAT 1457 Query 1432 GGAGACGGGGTTGAAACGCTGAATTTACTCTCAAAGATGAAAGACGAAGGTATTGAGCCT 1491 ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1458 GGAGATGGGGTTAAAACGCTGAATTTACTCTCAAAGATGAAAGACGAAGGCATTGAGCCA 1517 Query 1492 GACCGTGTGACTTACACTAGTGTCTTGACGGCTTGTAACCGTGCAGGATTACTCAAAGAA 1551 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 1518 GACCGTGTGACTTACACTAGTGTCTTGACGGCTTGCAACCGTGCAGGATTACTCGAAGAA 1577 Query 1552 GGCCAGAGAATATTCAAATCAATAAGAAATCCA-CTGGCGGATCATTATGC 1601 ||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct 1578 GGCCAGAGAATATTCAAATCAATTAGAAATCCGTC-GGCGGATCATTATGC 1627 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60830121265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5