BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14470.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920338 jgi|Araly1|920338|scaffold_101619.1 2403 0.0
> Ahg920338 jgi|Araly1|920338|scaffold_101619.1
Length=2415
Score = 2403 bits (1301), Expect = 0.0
Identities = 1510/1611 (94%), Gaps = 14/1611 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCGAGAGCTCACTGTATCTCTTGCCGCCATAGCTTCACAAGCTCTAACATTTC-C 59
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 21 ATGTCTCGAGAGCTCACTGCATCTCTTGCCGCCATAGCTTCACAAGCTCTAACA-TTCAC 79
Query 60 TCAATTAAACCAAATCCATGCTCAGCTCATTGTATTCAATTCTCTTCC-TCGACAAAGCT 118
||| |||||||||||||||||||| ||||| || | |||||| | ||| |||||||||||
Sbjct 80 TCAGTTAAACCAAATCCATGCTCATCTCATCGTCTCCAATTC-CCTCCATCGACAAAGCT 138
Query 119 ACTGGGCTTCGCGTATAATCAGCTGCTGCACGCGCCTCCGTGCGCCGTCTTACTACACGC 178
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 139 ACTGGGCTTCGCGTTTAATCAGCTGCTGCACGCGCCTCCGTGCGCCGCCTTACTACGCGC 198
Query 179 GGCTCATTTTCGATTCAGTGACATTCCCTAATGTCTTCGTTGTCAATTCCATGTTTAAAT 238
||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||| ||
Sbjct 199 GGCTCGTTTTCGATTCAGTGACATTTCCTAATGTCTTCCTCGTCAATTCGATGTTTAGAT 258
Query 239 ACTTCTCGAAGATGGATATGGCGAATGATGTTCTTCGTCTGTATGAACAAAGATCTCGTT 298
||||||| ||||||||||||||||||| | ||||||||| |||||||||||||| ||||
Sbjct 259 ACTTCTCTCAGATGGATATGGCGAATGACGCTCTTCGTCTCTATGAACAAAGATCGCGTT 318
Query 299 GTGGGATTATGCCTGACGCTTTTTCTTTCCCTGTTGTGATCAAATCGGCTGGGAGATTCG 358
| ||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||
Sbjct 319 GCGGGATTATGCCTGACACTTTTTTTTTCCCGGTTGTGATCAAATCGGCTGGGAAATTCG 378
Query 359 GGATTTTGTTTCAGGCCCTTGTTGAGAAGTTGGGATTTTTTAAGGACCCTTATGTGAGGA 418
|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 379 GGGTTTTGTTTCAGGCCCTTGTAGAGAAATTGGGATTTTTTAAGGACCCTTATGTGAGGA 438
Query 419 ATGTGATAATGGATATGTATGTGAAGCATGAGTCAGTGGAGAGTGCACGCAAAGTGTTCG 478
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 439 ATGTGATAATGGATATGTATGCGAAGCATGAGTCAGTGGAGAGTGCACGTAAAGTGTTCG 498
Query 479 ATCAAATTTCTCAGAGAAAGGGTTCTGACTGGAATGTGATGATTTCTGGGTATTGGAAAT 538
|||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 499 ATCAAATTACTCAGAGAATGGGTTCTGATTGGAATGTGATGATTTCTGGGTATTGGAAAT 558
Query 539 G-GGGAAACAAGGAGGAAGCTTGTAAGTTGTTCGATATGATGCC--A--G-AGAA-TGAT 591
| ||| |||||||||||||||||||| ||||| ||||||||||| | | | || ||||
Sbjct 559 GTGGG-AACAAGGAGGAAGCTTGTAAATTGTTTGATATGATGCCGGAGGGTAAAATTGAT 617
Query 592 GTGGTTTCTTGGACGGTGATGATTACTGGTTTTGCAAAGGTTAAGGATTTGGAAAATGCG 651
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 618 GTGGTTTCTTGGACGGTGATGATTACTGGTTTTGCGAAGCTTAAGGATTTGGAAAATGCA 677
Query 652 AGGAAGTATTTTGATCGGATGCCGGAGAAGAGTGTTGTTTCTTGGAACGCTATGCTTTCA 711
||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 678 AGGGGGTATTTTGATCGGATGCCGGAGAAGAGCGTTGTTTCTTGGAATGCTATGCTTTCA 737
Query 712 GGTTATGCTCAAAATGGTTTTACAGAGGATGCTCTGAGATTGTTTAACGATATGTTGAGA 771
|||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||
Sbjct 738 GGTTATTCTCAAAATGGGTTTACAGAGGAAACTCTGAGATTGTTTAATGATATGTTGAGA 797
Query 772 CTTGGAGTTAGGCCAAATGAGACCACATGGGTCATTGTTATTTCCGCATGTTCTTTCCGT 831
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 798 CTTGGAGTTAGGCCAAATGAGACCACATGGGTTATTGTTATTTCCGCTTGTTCTTTCCGT 857
Query 832 GCTGATCCTTCCCTCACTCGTTCACTAGTAAAACTGATTGATGAGAAGAGAGTCCGTTTG 891
||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 858 GCTGATCCTTCCCTCGCTCATTCACTAGTAAAACTGATTGGTGAGAAGAGAATCCGTTTG 917
Query 892 AATTGCTTTGTGAAGACAGCATTGCTTGATATGCATGCTAAGTGCAGAGATATTCAATCT 951
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 918 AATTTCTTTGTGAAGACGGCATTGCTTGATATGCATGCTAAGTGCAGAGATATTTTATCT 977
Query 952 GCTAGAAGAATTTTCAACGAGTTAGGTACGCAGAGGAATCTTGTGACTTGGAATGCTATG 1011
||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 978 GCTAGGAGAATTTTCAACGAGTTAGGTACGCAGAAGAATCTTGTCACTTGGAATGCTATG 1037
Query 1012 ATATCTGGATACACTAGAATCGGGGATATGAGTTCGGCTAGGCAGCTTTTTGATACAATG 1071
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1038 ATATCTGGATATACTAGAATTGGTGATATGAGTTCGGCTAGGCAGCTTTTTGATACAATG 1097
Query 1072 CCTAAGCGAAATGTTGTTTCTTGGAATTCTCTGATAGCTGGGTATGCTCACAACGGGCAA 1131
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1098 CCTAAGCGAAATGTTGTTTCTTGGAATTCGGTGATAGCTGGGTATGCTCACAACGGACAA 1157
Query 1132 GCTGCACTAGCCATTGAGTTTTTCGAAGATATGATTGATTATGGAGATTCCAAACCGGAT 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 CCTGCACTAGCCATTGAGTTTTTCGAAGATATGATTGATTATGGAGATTCCAAACCGGAT 1217
Query 1192 GAAGTAACAATGATTAGTGTTCTCTCGGCTTGTGGACACATGGCTGATCTAGAATTGGGT 1251
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1218 GAAGTAACAATGATTAGTGTTCTCTCGGCTTGTGGACACATGGGTGATCTAGAATTGGGT 1277
Query 1252 GATTGCATTGTAGATTACATTCGTAAGAACCAAATCAAGCTTAATGATTCAGGATACAGG 1311
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1278 GATTGCATTGTAGATTACATTGGTAAGAAGCAAATCAAGCTTAATGATTCAGGATACAGG 1337
Query 1312 TCTTTGATCTTCATGTATGCTAGGGGTGGAAACCTGTGGGAAGCAAAACGGGTGTTTGAC 1371
|| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1338 TCATTGATCTTCATGTATGCAAGGTGTGGAAACCTGTGGGAAGCAAAACGGGTGTTTGAC 1397
Query 1372 GAAATGAAGGAAAGAGATGTTGTCTCTTATAACACTTTATTCACAGCTTTTGCAGCTAAC 1431
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1398 GAAATGAAGGAAAGAGATGTTGTCTCTTATAACACGTTATTCTCAGCTTTTGCAGCTAAT 1457
Query 1432 GGAGACGGGGTTGAAACGCTGAATTTACTCTCAAAGATGAAAGACGAAGGTATTGAGCCT 1491
||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1458 GGAGATGGGGTTAAAACGCTGAATTTACTCTCAAAGATGAAAGACGAAGGCATTGAGCCA 1517
Query 1492 GACCGTGTGACTTACACTAGTGTCTTGACGGCTTGTAACCGTGCAGGATTACTCAAAGAA 1551
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1518 GACCGTGTGACTTACACTAGTGTCTTGACGGCTTGCAACCGTGCAGGATTACTCGAAGAA 1577
Query 1552 GGCCAGAGAATATTCAAATCAATAAGAAATCCA-CTGGCGGATCATTATGC 1601
||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1578 GGCCAGAGAATATTCAAATCAATTAGAAATCCGTC-GGCGGATCATTATGC 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5