BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14490.1
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471623 jgi|Araly1|471623|fgenesh2_kg.1__1577__AT1G14490.1 1009 0.0
Ahg949481 jgi|Araly1|949481|scaffold_801368.1 555 2e-157
> Ahg471623 jgi|Araly1|471623|fgenesh2_kg.1__1577__AT1G14490.1
Length=816
Score = 1009 bits (546), Expect = 0.0
Identities = 749/838 (89%), Gaps = 50/838 (6%)
Strand=Plus/Plus
Query 1 ATGGAAACCGTCGGGCGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAACCGTCGGCCGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCT 60
Query 61 CCAATCTTTGTCACCATTGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGA 120
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAATCTTTGTAACCATCGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGA 120
Query 121 AACGATGTCGTTGAAGCCCTAAACCGTTTCTGCCGCGGTAAAGCCATCGGCTTTTGCGTC 180
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AACGACGTCGTTGAAGCCCTAAACCGTTTCTGCCGCCGTAAAGCCATCGGCTTTTGCGTC 180
Query 181 CTCAGTGGCTCAGGCTCCGTTGCTGATGTCACTTTGCGTCAGCCTTCTCCGGCAGCTCCT 240
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTCAGTGGCTCAGGCTCCGTCGCTGATGTCACCTTGCGTCAGCCTTCTCCGGCAGCTCCT 240
Query 241 GGCTCAACCATTACTTTCCACGGAAAGTTCGAtcttctctctgtctccgccactttcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCTCAACCATTACTTTCCACGGAAAGTTCGATCTTCTCTCTGTCTCCGCCACTTTCCTC 300
Query 301 cctcctctacctcctacctccttgtcccctcccgtctccaatttcttcaccgtctctctc 360
||||||| |||| || |||||| |||||||| |||| |||||||||||||||||||||
Sbjct 301 CCTCCTCCGCCTCAGACTTCCTTGCCCCCTCCCTTCTCTAATTTCTTCACCGTCTCTCTC 360
Query 361 GCCGGACCTCAGGGGA-AAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGTTGCCGCCGG 419
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCCGGACCTCAGGG-ACAAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGTTGCCGCCGG 419
Query 420 AACTGTTTACTTCGTCGCCACTAGTTTCAAGAACCCTTCCTATCACCGGTTACCTGCTAC 479
|||||||||| ||||||| ||||||||||| |||||| |||||||||||||||| ||| |
Sbjct 420 AACTGTTTACGTCGTCGCTACTAGTTTCAATAACCCTGCCTATCACCGGTTACCCGCTGC 479
Query 480 GGAGGAAGAGCAAAGAAACTCGGCGGAAGGGGAAGAGGAGGGACAATCGCCGCCGGTCTC 539
||||||||||||||||||||| ||||||||||| | || |||||||||||||||||
Sbjct 480 GGAGGAAGAGCAAAGAAACTCAGCGGAAGGGGA-G-GGC----CAATCGCCGCCGGTCTC 533
Query 540 TGGAGGTGGTGGAGAGTCGATGTAC-GT-G------GG-TGGCTCTGATGTCATTTGGGA 590
||||||||||||||||||||||||| || | || |||||||||||||||||||
Sbjct 534 TGGAGGTGGTGGAGAGTCGATGTACAGTTGCCACATGGGTGGCTCTGATGTCATTTGGTC 593
Query 591 TCCCAACGCCAAAGCTCCATCGCCGTACTGACCACAAATCCATCTCGTTCAAACTAGGGT 650
||||||||||||||||||| || || |||||||| || ||||||| | ||||
Sbjct 594 TCCCAACGCCAAAGCTCCACCGTCGCACTGACCA-AA-TCCATCT-----A-----GGGT 641
Query 651 TTCTTCTTCTTTAGATCATCAAGAATCAACAAAAAGATTGCATTTTTAGA-TT-CT---- 704
||||||| |||| ||||||||||||||||||||||| |||||||||| | || ||
Sbjct 642 TTCTTCTACTTTTGATCATCAAGAATCAACAAAAAGTTTGCATTTTTTGTCTTGCTAGAG 701
Query 705 TTGT---AATATCATAATTGACTCACTCTTTAA--TCT----CTCTATCAC--TTCTTCT 753
|| | ||||||| |||||||||||||||||| ||| |||| |||| || || |
Sbjct 702 TTTTTTTAATATCAGAATTGACTCACTCTTTAAGCTCTTAATCTCTCTCACACTTGTTGT 761
Query 754 TTAGCTTTTT-CTGCAGTGTCAAACTTCACATATTTGTAGTTTGATTTGACTATCCCC 810
|||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 762 TTAGCTTTTTTCTGCAGTGTCAAACTTCATATATT---AGTTTGATTTGACTATCCCC 816
> Ahg949481 jgi|Araly1|949481|scaffold_801368.1
Length=855
Score = 555 bits (300), Expect = 2e-157
Identities = 478/562 (85%), Gaps = 20/562 (4%)
Strand=Plus/Plus
Query 9 CGTCGGGCGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCTCCAATCTT 68
|||| | ||||||||||||||||| | |||||||||||||||||||||| | || ||||
Sbjct 164 CGTCCGACGTCCACGTGGCAGACCACCAGGTTCCAAAAACAAACCTAAACCACCTGTCTT 223
Query 69 TG-T-CAC--CAT--TGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGAAA 122
| | ||| || |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 224 CGTTACACGTGATACCGACCCTCCTATGAGTCCTTACATCCTCGAAGTTCCATCAGGAAA 283
Query 123 CGATGTCGTTGAAGCCCTAAACCGTTTCTGCCGCGGTAAAGCCATCGGCTTTTGCGTCCT 182
||| |||||||||||| | ||||||||||||||| ||||| ||||||| |||| |||||
Sbjct 284 CGACGTCGTTGAAGCCATCAACCGTTTCTGCCGCCGTAAATCCATCGGAGTTTGTGTCCT 343
Query 183 CAGTGGCTCAGGCTCCGTTGCTGATGTCACTTTGCGTCAGCCTTCTCCGGCAGCTCCTGG 242
|||||||| ||||| || ||| | |||||||| ||||||||||||||||||||||||||
Sbjct 344 TAGTGGCTCTGGCTCTGTAGCTAACGTCACTTTACGTCAGCCTTCTCCGGCAGCTCCTGG 403
Query 243 CTCAACCATTACTTTCCACGGAAAGTTCGAtcttctctctgtctccgccactttcctccc 302
||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 404 CTCAACCATAACTTTCCACGGAAAGTTCGATCTCCTCTCCGTCTCCGCAACTTTCCTCCC 463
Query 303 tcctctacctcctacctccttgtcccctcccgtctccaatttcttcaccgtctctctcGC 362
||||| |||| ||| |||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 464 TCCTCCGCCTCGTACTTCCTTGTCCCCTCCCGTCTCTAACTTCTTCACCGTCTCTCTAGC 523
Query 363 CGGACCTCAGGGG-AAAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGT-TGCCGCCGGA 420
||||||||| || ||| |||||||||| |||||||||||||| || | | |||| |||
Sbjct 524 CGGACCTCAAGGACAAA-TCATCGGTGGGTTCGTCGCTGGTCCACTTATCT-CCGCAGGA 581
Query 421 ACTGTTTACTTCGTCGCCACTAGTTTCAAGAACCCTTCCTATCACCGGTTACCTGCTACG 480
|| |||||| || |||| | |||||||| |||||||| |||||||||||||| || |
Sbjct 582 ACAGTTTACGTCATCGCTGCAAGTTTCAACAACCCTTCTTATCACCGGTTACCGGC---G 638
Query 481 GAGGAAGAGCAAAGAA-ACTCGGCGG--A-AGGGGAA-GAGGAGGGACAATCGCCGCCGG 535
|| |||||||||| || ||||||||| | ||| ||| ||| |||| ||||| || ||||
Sbjct 639 GAAGAAGAGCAAA-AACACTCGGCGGGGACAGGAGAAAGAG-AGGGCCAATCTCCACCGG 696
Query 536 TCTCTGGAGGTGGTGGAGAGTC 557
| ||||| || |||| ||||||
Sbjct 697 TGTCTGGTGGCGGTGAAGAGTC 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30002735679
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5