BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14510.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471625 jgi|Araly1|471625|fgenesh2_kg.1__1579__AT1G14510.1 1755 0.0
Ahg935990 jgi|Araly1|935990|scaffold_500181.1 697 0.0
> Ahg471625 jgi|Araly1|471625|fgenesh2_kg.1__1579__AT1G14510.1
Length=1261
Score = 1755 bits (950), Expect = 0.0
Identities = 1055/1103 (96%), Gaps = 17/1103 (2%)
Strand=Plus/Plus
Query 220 TGGTGAGGCTGATTCATTCTCATCTGTGAAAGTCTTTGGCTTTTGAAGC---AATACTAT 276
|||||||||||||| ||||||||||||| |||||||||| |||||||| |||| |||
Sbjct 164 TGGTGAGGCTGATTGATTCTCATCTGTG-AAGTCTTTGG--TTTGAAGCAATAATAATAT 220
Query 277 GGAAGGAATTCAGCATCCTATACCTCGCACTGTCGAAGAGGTTTTTAGCGACTTTCGTGG 336
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 221 GGAAGGAATTCAGCATCCTATACCTCGCACTGTCGAAGAGGTCTTTAGCGACTTTCGTGG 280
Query 337 TCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGATGTACAGAAGTTTTACCATCAGTG 396
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 281 TCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGATGGACAGAAGTTTTACCATCAGTG 340
Query 397 TGACCCTGAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGGGAGGTTAA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TGACCCTGAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGGGAGGTTAA 400
Query 457 TCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGGCATCAATTTCGC 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGGCATCAATTTCGC 460
Query 517 AAGGGACGGAATGCAAGAAAAAGACTGGATTTCTTTGGTTGCAGTTCACAGTGATTCATG 576
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 461 TAGGGACGGAATGCAAGAAAAAGACTGGATATCTTTGGTTGCAGTTCACAGTGATTCATG 520
Query 577 GCTTATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGGAA 636
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 521 GCTTATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGTAAGAATGAGAGGAA 580
Query 637 GAGGCTCTTCCAGATGATAAATGATCTCCCAACCATTTTCGAGGTTGTAACTGGCAATGC 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GAGGCTCTTCCAGATGATAAATGATCTCCCAACCATTTTCGAGGTTGTAACTGGCAATGC 640
Query 697 AAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATCTAGTGGTGG 756
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 641 AAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATCTGGCGGTGG 700
Query 757 CAAGCCTCGTCATTCTGA-ATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCAAGAA 815
|||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||
Sbjct 701 CAAGCCTCGTCATTCTGATA-CTCACACTAAGGCTTCAAAGATGTCCCCACCACCAAGAG 759
Query 816 AAGAAGATGAGAGCGGAGATGAGGATGAAGATGACGAGCAAGGTGCTGTTTGTGGTGCGT 875
||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||
Sbjct 760 AAGAAGATGAGAGCGGAGATGAGGAGGAAGATGATGAACAAGGTGCTGTTTGTGGCGCGT 819
Query 876 GTGGCGACAACTATGGAGGAGATGAGTTCTGGATATGTTGTGATGCTTGCGAGAAATGGT 935
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GTGGAGACAACTATGGAGGAGATGAGTTCTGGATATGTTGTGATGCTTGCGAGAAATGGT 879
Query 936 TCCATGGGAAATGCGTGAAGATCACACCAGCAAAGGCTGAGCATATCAAACATTACAAAT 995
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 880 TCCATGGAAAATGCGTGAAGATCACACCAGCAAAGGCTGAGCACATCAAACATTACAAAT 939
Query 996 GCCCAAGTTGCACTACCAGCAAGAAAATGAAAGCCTGAAAGTGATAATAACATTAGAGCC 1055
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 940 GCCCAAGTTGCAGTACCAGCAAGAAAATCAAAGCCTGAAAGTGATAATAACATTAGAGAC 999
Query 1056 TGTGAAAGAGGAAAACGTTTTCACAGTTTAAGAA---GACAGTACAAGAGTTTAGCTGTG 1112
||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1000 TGTGAAAGAGGGGAACGTTTTCACAGTTGAAGAAAAAGACAGAACAAGAGTTTAGCTGTG 1059
Query 1113 GGAAGAAGAAGAAACAAAAGGCTTCTGATTGCGTAGTTTTAATGGGATTGAGACAGCTTA 1172
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 GTAAGAAGAAGAAACAAAAGGCTTCTGATTGCGTAGTTTTAATGGGATTGAGACAGCTTA 1119
Query 1173 CAGTTAGTAATGtctctttctct-tttctttt---cttttttttt-GCTGTTAATGTTAA 1227
||||||||||||||| ||||||| ||| |||| |||||||||| ||||||||||||||
Sbjct 1120 CAGTTAGTAATGTCTATTTCTCTCTTTTTTTTTTTCTTTTTTTTTTGCTGTTAATGTTAA 1179
Query 1228 AATGTTATGACTAATTTGTCTTAAGTTTCTGAGAAAATTCTGTCTTTTAAGCACTCTCTA 1287
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1180 AATGTTATGACTAATTTGTCTTATGTTTCTGAGAAAATTCTCTCTTT-AAGCACTCTCTA 1238
Query 1288 GTCTATGTCAAGTGGTTTCTTCT 1310
|||||||| ||||||||||||||
Sbjct 1239 GTCTATGTTAAGTGGTTTCTTCT 1261
> Ahg935990 jgi|Araly1|935990|scaffold_500181.1
Length=805
Score = 697 bits (377), Expect = 0.0
Identities = 630/750 (84%), Gaps = 25/750 (3%)
Strand=Plus/Plus
Query 275 ATGGAAGGAATTCA-GCATCCTATACCTCGCACTGTCGAAGAGGTTTTTAGCGACTTTC- 332
|||||||||| ||| ||||| |||||||| ||||| |||||||| ||||||||| |||
Sbjct 21 ATGGAAGGAA-TCACTCATCCAATACCTCGTACTGTTGAAGAGGTCTTTAGCGAC-TTCA 78
Query 333 GTGGTCGTA-GAGCTGGTCTCATCAAGGCTCTCTCTACTGATGTACAGAAGTTTTACC-A 390
| ||||| | |||||||||| || || |||||| | | |||| | ||||||||||| |
Sbjct 79 GAGGTCG-ACGAGCTGGTCTTATTAAAGCTCTCACAAATGATATGGTGAAGTTTTACCAA 137
Query 391 TCAGTGTGACCCTGAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGGGA 450
| |||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 138 AC-GTGTGATCCTGAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAATGAGACATGGGA 196
Query 451 GGTTAATCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGGCATCAA 510
||||||||| ||||||||||| || ||||||||||||||||||||||| || ||||| ||
Sbjct 197 GGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCTTTGGGCATTAA 256
Query 511 TTTCGCAAGGGACGGAATGCAAGAAAAAGACTGGATTTCTTTGGTTGCAGTTCACAGTGA 570
|||||||| || |||||||||||||| |||||| | |||||||| || |||||||||||
Sbjct 257 CTTCGCAAGAGATGGAATGCAAGAAAAGGACTGGGTGTCTTTGGTCGCGGTTCACAGTGA 316
Query 571 TTCATGGCTT-ATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATG 629
||||||| || | |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 317 TTCATGG-TTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGTAAGAACG 375
Query 630 AGAGGAAGAGGCTCTTCCAGATGATAAATGATCTCCCAACCATTTTCGAGGTTGTAA-CT 688
||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||| | |
Sbjct 376 AGAGGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGTGAGCG 435
Query 689 G--GCAATGCAAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAAT 746
| |||||||||| || |||||||||| ||||| |||| ||| || ||||| |||||||
Sbjct 436 GCAGCAATGCAAATCAGTCCAAGGATCTATCTGTTAACAACAGCAATAGCAAAAGCAAAC 495
Query 747 CTAGTGGTGGCAAGCCTCGTCATTCTGAATCTCACACTAAGGCTT-CAAAGATGTCCCCT 805
||||||| |||| | || || || ||||||| ||| |||| || |||||||||| ||
Sbjct 496 CTAGTGGCATCAAGTCGCGCCAATCCGAATCTCTCACAAAGG-TTGCAAAGATGTCATCT 554
Query 806 CCACC---AAGAA-AAGAAGATGA-GAGCG-GA-GATGAGGATGAAGATGACGAGCAAGG 858
||||| || || |||||||||| ||| | || || ||||| || || || || |||||
Sbjct 555 CCACCGCCAA-AAGAAGAAGATGATGAGAGTGAAGACGAGGAAGAGGACGATGAACAAGG 613
Query 859 TGCTGTTTGTGGTGCGTGTGGCGACAACTATGG-AGGAGATGAGTTCTGGATATGTTGTG 917
||| |||||||| || ||||| |||||||| || | ||||||||||||||| || || |
Sbjct 614 TGCGGTTTGTGGCGCTTGTGGAGACAACTACGGTAC-AGATGAGTTCTGGATTTGCTGCG 672
Query 918 ATGCTTGCGAGAAATGGTTCCATGGGAAATGCGTGAAGATCACACCAGCAAAGGCTGAGC 977
| || || ||||||||||||||||| ||||| |||||||| ||||| ||||| || || |
Sbjct 673 ACGCGTGTGAGAAATGGTTCCATGGAAAATGTGTGAAGATAACACCTGCAAAAGCAGAAC 732
Query 978 ATATCAAACATTACAAATGCCCAAGTTGCA 1007
| ||||| ||||||||||||||||||||||
Sbjct 733 ACATCAAGCATTACAAATGCCCAAGTTGCA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5