BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14518.1

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334745 jgi|Araly1|334745|fgenesh1_pg.C_scaffold_1001310           327    4e-89


> Ahg334745 jgi|Araly1|334745|fgenesh1_pg.C_scaffold_1001310
Length=933

 Score =  327 bits (177),  Expect = 4e-89
 Identities = 205/218 (94%), Gaps = 4/218 (2%)
 Strand=Plus/Plus

Query  30   AGATGATTTGCTTGCAAAAAACACCACGAATCTCCTTGTTTTGGTATCCGGAAGAGTTGG  89
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  132  AGATGATTTGCTTGCAAAAAACACCACGAATCTCCTTGTTCTGGTATCCGGAAGAGTTGG  191

Query  90   TTCCGCAGCTCCCCTCGACTGCAAACACAATGGTCTTTTTGGTGCTT-TTGTTGAGGAAA  148
            ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct  192  TTCCGCAGCTCCCCTCGACTGCAAACACAATGGTCTTTTGGGTG-TTCTTGTTGAGGAAA  250

Query  149  AGGCTAAACTGGATTGT-ATGATCGAGTTGGACGGTGGTAGTTTGATAGAGAAGTCTCTA  207
             |||||||||||||||| | |||| ||||||| |||||| |||||||||| |||||||||
Sbjct  251  CGGCTAAACTGGATTGTGA-GATCAAGTTGGAAGGTGGTGGTTTGATAGACAAGTCTCTA  309

Query  208  ACGATTCTGTTACATCAAAAGGAGACTCCTTGGTATCT  245
            | | ||||||||||||||||||||||||||||||||||
Sbjct  310  AAGTTTCTGTTACATCAAAAGGAGACTCCTTGGTATCT  347



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22111291860


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5