BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14520.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920348 jgi|Araly1|920348|scaffold_101629.1 1500 0.0
Ahg920346 jgi|Araly1|920346|scaffold_101627.1 165 8e-40
> Ahg920348 jgi|Araly1|920348|scaffold_101629.1
Length=977
Score = 1500 bits (812), Expect = 0.0
Identities = 923/977 (94%), Gaps = 6/977 (1%)
Strand=Plus/Plus
Query 240 TGGATCTGAAGAATCTCCATGACTATTCTCATAGATCGCCACTCTGATCAGAACGATGCA 299
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 4 TGGATCTGAAGTATCTCCATGACGATTCTCATCGATCGCCACTCTGATCAGAACGATGCA 63
Query 300 GGAGATGAGATTGTAGAGAAGAATCAGGGGAATGGTAAAGAGGAAGAAACAGAGTTGGTG 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 64 GGAGATGAGATTGTAGAGAAGAATCAGGGGAATGTTAAAGAGGAAGAAACAGAGTTGGTG 123
Query 360 TTAGATGCAGGTTTCGAGGCTCCTCACACCAACTCTTTTGGTCGCACCTTCAGGGATTAT 419
|||||||||||||| |||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 124 TTAGATGCAGGTTTTGAGGCTCCTCACACCAACTCCTTCGGTCACACCTTCAGGGATTAT 183
Query 420 GATGCTGAGAGTGAAAGG-AGAAGAGGTGTTGAGGAATTTTACAGAGTCAATCACATTGG 478
|||||||||||||| ||| || |||||||| |||||||||||||| || |||||||||||
Sbjct 184 GATGCTGAGAGTGAGAGGAAG-AGAGGTGTGGAGGAATTTTACAGGGTTAATCACATTGG 242
Query 479 CCAAACCGTTGATTTCGTGAGGAAGATGAGAGAAGAATACGA-GAAGCTAAATCGTACGG 537
|||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||| |
Sbjct 243 CCAAACCGTTGATTTCGTGAGGAAGATGAGGGAAGAATAC-AGGAAGCTAAACCGTACTG 301
Query 538 AGATGAGCATTTGGGAATGTTGCGAGCTTCTGAATGAGTTTATCGACGAGAGTGATCCTG 597
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 302 AGATGAGCATTTGGGAATGCTGTGAGCTTCTGAATGAGTTTATCGACGAGAGTGATCCCG 361
Query 598 ATTTGGACGAACCTCAGATCGAGCATCTGCTTCAGACAGCTGAAGCCATCAGAAAAGATT 657
|||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct 362 ATTTGGACGAACCTCAGATCGAACATTTGCTTCAGACAGCTGAAGCCATCAGGAAAGATT 421
Query 658 ACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGATCTTGGAAAAGTTCTTC 717
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 422 ACCCTGATGAAGACTGGCTCCATCTAACCGGTCTTATCCACGATCTTGGAAAAGTTCTTC 481
Query 718 TTCACTCTTCATTTGGTGAGCTCCCTCAGTGGGCTGTCGTCGGTGATACATTTCCAGTGG 777
||||| |||||||||||||||||||||| |||||||| || || ||||||||||||||||
Sbjct 482 TTCACCCTTCATTTGGTGAGCTCCCTCAATGGGCTGTTGTTGGCGATACATTTCCAGTGG 541
Query 778 GATGTGCTTTTGATGAATCTATTGTTCACCACAAGTACTTCAAGGAGAATCCAGACTATG 837
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GATGTGCATTTGATGAATCTATTGTTCACCACAAGTACTTCAAGGAGAATCCAGACTATG 601
Query 838 ATAACCCGAGTTACAACTCTAAGTATGGGATATACACTGAAGGCTGTGGGCTCGACAATG 897
|||||| ||||||||| | ||||| ||||||||||| |||| |||||||||||||||||
Sbjct 602 ATAACCTTAGTTACAACACCAAGTACGGGATATACACCGAAGACTGTGGGCTCGACAATG 661
Query 898 TGTTAATGTCTTGGGGACATGATGATTACATGTACCTTGTTGCGAAGGAGAATCAAACTA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TGTTAATGTCTTGGGGACATGATGATTACATGTACCTTGTTGCGAAGGAGAATCAAACTA 721
Query 958 CTTTACCATCAGCCGGTCTTTTCATCATCAGATACCATTCGTTCTACGCTCTTCACAAAT 1017
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CATTACCATCTGCCGGTCTTTTCATCATCAGATACCATTCGTTCTACGCTCTTCACAAAT 781
Query 1018 CAGAAGCATACAAGCATTTGATGAACAATGAAGACAGAGAGAACATGAAGTGGCTTAAAG 1077
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 782 CAGAAGCATATAAGCATTTGATGAACAATGAAGACAGAGAGAACATGAATTGGCTGAAAG 841
Query 1078 TGTTCAACAAGTATGATCTCTACAGCAAAAGCAAAGTCCGCGTAAACGTTGAGGAAGTGA 1137
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 842 TGTTCAACAAGTATGATCTCTACAGCAAAAGCAAAGTCCGTGTTAACGTGGAGGAAGTGA 901
Query 1138 AACCATATTATCTCTCCCTTACCAACAAGTATTTTCC-GTCCAAGCTAAAATGGTGAAAC 1196
|||||||||| |||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 902 AACCATATTACCTCTCCCTTATCAACAAGTATTTTCCAG-CCAAGCTAAAATGGTGAAAA 960
Query 1197 CCTACAAGCAGAAAGCT 1213
|||||||||||||||
Sbjct 961 ATTACAAGCAGAAAGCT 977
> Ahg920346 jgi|Araly1|920346|scaffold_101627.1
Length=204
Score = 165 bits (89), Expect = 8e-40
Identities = 110/120 (92%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 993 CATTCGTTCTACGCTCTTCACAAATCAGAAGCATACAAGCATTTGATGAACAATGAAGAC 1052
||| ||||| | |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 39 CATACGTTC-A-GCTCTTTGCAAATCAGAAGAATACAAGCATTTGATGAACAATGAAGAC 96
Query 1053 AGAGAGAACATGAAGTGGCTTAAAGTGTTCAACAAGTATGATCTCTACAGCAAAAGCAAA 1112
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 97 AGAGAGAACATGAAGTGGCTGAAAGTGTTCAACAAGTGCGATCTCTACAGCAAACGCAAA 156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5