BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14530.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471628 jgi|Araly1|471628|fgenesh2_kg.1__1582__AT1G14530.2 1616 0.0
Ahg484143 jgi|Araly1|484143|fgenesh2_kg.5__135__AT2G02180.1 920 0.0
> Ahg471628 jgi|Araly1|471628|fgenesh2_kg.1__1582__AT1G14530.2
Length=1194
Score = 1616 bits (875), Expect = 0.0
Identities = 976/1024 (95%), Gaps = 9/1024 (1%)
Strand=Plus/Plus
Query 26 GAAGGAGAAGGAGAGAGGAGAAGTGATTCGATCGATTCTCTTTTTGGTGATCG-AAGCTA 84
|||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 1 GAAGGAGAAGGAGAGAGGAGAAGTGATTCGATCGATTCTCTTATCCGTGATCGAAAGCTA 60
Query 85 AATCTATAAGGAATTTGAATCTTTGTATGTG-tttttttCGTGGAGATGAGAAGCGGCGG 143
||||||| |||||| |||||| ||||||| | |||||||| ||| ||||||||||||||
Sbjct 61 AATCTATTAGGAATCTGAATC-TTGTATGAGTTTTTTTTCCCGGAAATGAGAAGCGGCGG 119
Query 144 CTTGGAAATGATGTCATCTT------CAGCAATCGTAGCGTTTAATTTGAAGGAGGGTAA 197
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 120 CTTGGAAATGATGTCATCTTCGGCGGCAGCAATCGTAGCGTTTAATTTGAAGGAGGCTAC 179
Query 198 GAATTGGTGGTGGGATGTGAATGAATCTCCGGTGTGGCAGGATCGTATCTTCCATGTTCT 257
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAATTGGTGGTCGGATGTGAATGAATCTCCGGTGTGGCAGGATCGTATCTTCCATGTTCT 239
Query 258 TGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGATTCAATTGGTAAGAATACAATT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGATTCAATTGGTAAGAATACAATT 299
Query 318 GAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGGT 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 GAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCTTGGT 359
Query 378 TAACGGAGTTCGAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGA 437
|| ||||||||||||||||||||| | ||||| ||||||| |||||| ||| |||||||
Sbjct 360 GAATGGAGTTCGAGCTCTGGTTTTTGTTTTCCGTCGAGATGTACAGAATATGAAGCCAGA 419
Query 438 GATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCT 497
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 GATTCTGCAACATATCTTACTTGACATTCCAAGTCTTGCTTTCTTCACTACATATGCGCT 479
Query 498 TCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCGACTGATGGACT 557
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TCTTGTTCTCTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCCACTGATGGACT 539
Query 558 GAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGATTGCTCTTTGGTT 617
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GAGGCCAAGTTTCTTCACAATTAATGCAGTTGTTTACGTAATTCAGATTGCTCTTTGGTT 599
Query 618 GGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAAGATGTTCTTTGCAGG 677
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 GGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAGGATGTTCTTTGCAGG 659
Query 678 TGTCTCATTGTTTGCGGCCCTTGGCTTTTTATTATATGGAGGAAGGCTTTTCCTGATGCT 737
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTCTCATTGTTCGCGGCCCTTGGCTTTTTATTATATGGAGGAAGGCTTTTCCTGATGCT 719
Query 738 GCAACGATTTCCAGTAGAGTCTAAAGGGCGGCGCAAGAAGCTACAAGAGGTTGGCTACGT 797
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 GCAACGATTTCCAGTAGAATCTAAAGGGCGGCGCAAGAAGCTGCAAGAGGTTGGCTACGT 779
Query 798 GACAACCATATGCTTTACATGTTTCCTCATCAGATGTATCATGATGTGCTTTGATGCGTT 857
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 GACATCCATATGCTTTACATGTTTCCTCATCAGATGCATCATGATGTGCTTTGATGCGTT 839
Query 858 TGACGATGCAGCAGATCTTGATGTCTTAGATCATCCAATCCTAAACTTCATATATTACTT 917
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 840 CGATGATGCAGCAGATCTTGATGTCCTAGATCATCCAATCCTAAACTTCATATATTACCT 899
Query 918 GTTGGTGGAGATATTGCCATCGTCTCTGGTCCTCTTTATCCTAAGAAAGCTTCCGCCAAA 977
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 GTTGGTGGAGATATTGCCTTCGTCTCTGGTCCTCTTTATCCTAAGAAAGCTTCCACCAAA 959
Query 978 ACGCGGTATCACACAGTACCATCAAATCCAATGAACATGTTCAGAGAATCGAAACACTGA 1037
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACGCGGAATCACACAATACCATCAAATCCAATGAACATGTTCAGAGAATCGAAACACTGA 1019
Query 1038 GGTA 1041
||||
Sbjct 1020 GGTA 1023
> Ahg484143 jgi|Araly1|484143|fgenesh2_kg.5__135__AT2G02180.1
Length=1201
Score = 920 bits (498), Expect = 0.0
Identities = 718/825 (87%), Gaps = 11/825 (1%)
Strand=Plus/Plus
Query 198 GAATTGGTGGTGGGATGTGAATGAATCTCCGGTGTGGCAGGATCGTATCTTCCATGTTCT 257
||||||||||| || || || || |||||| | ||||||||||||||||||||||||||
Sbjct 191 GAATTGGTGGTCAGACGTAAACGAGTCTCCGATTTGGCAGGATCGTATCTTCCATGTTCT 250
Query 258 TGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGATTCAA-TTGGTAAGAATACAAT 316
|||||||| || ||||||||||||||| |||||||||||||| || || ||||||||||
Sbjct 251 CGCTGTTCTCTACGGAATCGTTTCCGTCGTTGCTGTGATTCAACTT-GTGAGAATACAAT 309
Query 317 TGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGG 376
|||||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||| | |
Sbjct 310 TGAGAGTTCCTGAATATGGTTGGACTACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTG 369
Query 377 TTAACGGAGTTCGAGCTCTGGTTTTTCTCTTCCGGCGAGA--TGCACAGAACATGCAGCC 434
|||| |||||||| ||| |||| ||| ||||| | || | |||| | ||||| ||
Sbjct 370 TTAATGGAGTTCGTGCTGTGGTGTTTGTCTTCAGAAGAAACGTGCA-A-TTTATGCATCC 427
Query 435 AGAGATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGC 494
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 428 AGAGATTCTGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGC 487
Query 495 GCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCGACTGATGG 554
|||||||||||||| ||||| || |||||||| ||||| ||||| ||||||||||||||
Sbjct 488 TCTTCTGGTTCTCTTCTGGGCTGAAATTTACTATCAGGCGCGTGCAGTATCGACTGATGG 547
Query 555 ACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGATTGCTCTTTG 614
|||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 548 ACTGAGGCCAAGCTTCTTCACAATAAATGCAGTTGTATATGTAGTTCAGATTGCTCTTTG 607
Query 615 GTTGGTTTTGTGGTGGAAGCCTGTTC-ACCTTATGGTAATCATTTCTAAGATGTTCTTTG 673
|||||||||||||||||||||||||| | ||||| ||||| | ||||||||||||||||
Sbjct 608 GTTGGTTTTGTGGTGGAAGCCTGTTCGAA-TTATGATAATCCTATCTAAGATGTTCTTTG 666
Query 674 CAGGTGTCTCATTGTTTGCGGCCCTTGGCTTTTTA-TTATATGGAGGAAGGCTTTTCCTG 732
|||| || |||||||| || || ||||| |||||| || ||||| |||||||||||| |
Sbjct 667 CAGGCGTTTCATTGTTCGCTGCGCTTGGATTTTTACTT-TATGGTGGAAGGCTTTTCTTA 725
Query 733 ATGCTGCAACGATTTCCAGTAGAGTCTAAAGGGCGGCGCAAGAAGCTACAAGAGGTTGGC 792
||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 726 ATGTTGCAACGATTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAGGTTGGT 785
Query 793 TACGTGACAACCATATGCTTTACATGTTTCCTCATCAGATGTATCATGATGTGCTTTGAT 852
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 786 TACGTGACAACCATATGCTTTACGTGTTTCCTCATCAGATGTATCATGATGTGCTTTGCT 845
Query 853 GCGTTTGACGATGCAGCAGATCTTGATGTCTTAGATCATCCAATCCTAAACTTCATATAT 912
|| ||||| || | ||| | |||||||| ||||||||||| ||||| ||||||||||||
Sbjct 846 GCTTTTGATGAGGGGGCAAACCTTGATGTGTTAGATCATCCCATCCTCAACTTCATATAT 905
Query 913 TACTTGTTGGTGGAGATATTGCCATCGTCTCTGGTCCTCTTTATCCTAAGAAAGCTTCCG 972
||| ||||||| |||||||| || || ||||||||||| || ||| | |||||||| ||
Sbjct 906 TACCTGTTGGTAGAGATATTACCGTCCTCTCTGGTCCTGTTCATCTTGAGAAAGCTACCA 965
Query 973 CCAAAACGCGGTATCACACAGTACCATCAAATCCAATGAACATGT 1017
|||||||| || || ||||| |||||||| || | |||| ||||
Sbjct 966 CCAAAACGAGGCATTACACAATACCATCAGATTCGCTGAA-ATGT 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5