BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14540.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920350 jgi|Araly1|920350|scaffold_101631.1 1439 0.0
> Ahg920350 jgi|Araly1|920350|scaffold_101631.1
Length=991
Score = 1439 bits (779), Expect = 0.0
Identities = 915/981 (93%), Gaps = 8/981 (1%)
Strand=Plus/Plus
Query 90 TCTTGTAATAA-GCTAAATGGCGATCTTCAAGATTCTTGTATTGTTGTTGAGTTTGTGTT 148
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4 TCTTGTTATAACACTAAATGGCGATCTTCAAGATTCTTGTATTGTTGTTGAGTTTGTCTT 63
Query 149 GTTTCAGTCAAGCACAACTTTCTCCTACTTTCTACGACCAAACTTGTCAAAACGCTCTCT 208
||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||
Sbjct 64 GTTTCTGTCAAGCACAACTTTCTCCTTCTTTCTACGACCAAACTTGTCCAAATGCTCTCT 123
Query 209 CCACCATCCGATCTTCAATCCGAACCGCAATCAGCCGTGAACGTAGAATGGCTGCTTCTC 268
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CGACCATCCGGTCTTCAATCCGAACCGCAATCAGCCGTGAACGTAGAATGGCTGCTTCTC 183
Query 269 TCATCCGTCTCCATTTCCACGACTGCTTCGTTAATGGTTGTGATGCATCGGTCATGCTCG 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TCATCCGTCTCCATTTCCACGACTGCTTCGTTAATGGTTGTGATGCATCGGTCATGCTCG 243
Query 329 TGGCAACTCCCACCATGGAGAGTGAGAGAGATTCATTGGCAAATTTTCAATCGGCAAGAG 388
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 244 TGGCAACTCCCACCATGGAGAGTGAGAGAGACTCATTGGCAAATTTTCAATCGGCAAGAG 303
Query 389 GATTTGAAGTTATCGATCAAGCCAAATCAGCTGTAGAGAGTGTTTGTCCCGGCGTTGTTT 448
|||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||
Sbjct 304 GATTCGAAGTTATCGATCAAGCCAAATCCGCTGTGGAGAGTGTGTGTCCAGGCGTAGTTT 363
Query 449 CTTGCGCTGATATTATTGCCGTTGCTGCTAGAGATGCTTCTGAATATGTCGGAGGTCCAA 508
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 364 CTTGCGCTGATATTATTGCCGTTGCTGCCAGAGACGCTTCTGAATATGTCGGAGGTCCAA 423
Query 509 GATATGATGTGAAGGTTGGTCGAAGAGATTCCACCAACGCGTTTAGGGCTATCGCAGACA 568
||||| |||||||||||||||||||||||||||| || ||||||||||| || |||||||
Sbjct 424 GATATAATGTGAAGGTTGGTCGAAGAGATTCCACTAATGCGTTTAGGGCAATTGCAGACA 483
Query 569 G-GG--ATCTCCCCAACTTCAGGGCTAGCCTCAACGATCTCTCTGAACTCTTCCTTCGAA 625
| || |||||||||| || ||||| |||||||||||||||||||||||||||||| ||
Sbjct 484 GCGGCGATCTCCCCAATTTTAGGGCAAGCCTCAACGATCTCTCTGAACTCTTCCTTAAAA 543
Query 626 AAGGACTCAACACAAGAGACCTCGTCGCTCTCTCAGGAGCTCACACATTAGGGCAAGCTC 685
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 544 AAGGACTCAACACTAGAGACCTCGTCGCTCTCTCAGGAGCTCACACCTTAGGGCAATCTC 603
Query 686 AATGCCTCACGTTCAAAGGTAGGCTTTACGATAACTCGAGTGACATTGACGCGGGATTCT 745
|||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 604 AATGCCTCACATTCAAGGGTAGACTTTACGACAACTCGAGTGACATTGACGCAGGATTCT 663
Query 746 CCAGTACCCGTAAGCGTCGTTGTCCGGTCAACGGTGGAGATACGACTCTAGCACCTTTAG 805
|||| || ||||||||||| || ||||||||||||||||||||||||||||||||| | |
Sbjct 664 CCAGCACACGTAAGCGTCGCTGCCCGGTCAACGGTGGAGATACGACTCTAGCACCTCTCG 723
Query 806 ATCAAGTGACACCAAACTCGTTCGACAATAACTATTACAGAAACTTGATGCAGAAGAAAG 865
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 ATCAAGTGACACCAAATTCGTTCGACAATAACTATTACAGAAACTTGATGCAGAAGAAAG 783
Query 866 GACTTTTAGAAAGC-GATCAAGTTTTGTTCGGAACCGGAGCTTCTACAGATAGTATAGTG 924
||||||| || | | |||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 784 GACTTTTGGAGA-CTGATCAAGTTTTGTTCGGAACCGGAGCTTCTACGGACAGTATTGTG 842
Query 925 ACGGAGTACAGCAGAAATCCATCACGATTTGCGTCTGATTTCTCAGCTGCAATGATCAAA 984
|| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 843 ACAGAGTACAGCAGAAATCCATCACGATTCGCGTCTGATTTCGGAGCTGCAATGATCAAA 902
Query 985 ATGGGAGATATTCAGACACTCACTGGTTCAGATGGACAAATCCGAAGAATCTGCAGTGCC 1044
||||||||||||||||||||||| || ||||||||||||||||| || || |||||||||
Sbjct 903 ATGGGAGATATTCAGACACTCACCGGCTCAGATGGACAAATCCGGAGGATATGCAGTGCC 962
Query 1045 GTTAATTAAAAGAGTTATTAC 1065
||||| ||| ||||||||||
Sbjct 963 GTTAACTAA--GAGTTATTAC 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5