BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14550.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312453 jgi|Araly1|312453|fgenesh1_pm.C_scaffold_1001233 1452 0.0
> Ahg312453 jgi|Araly1|312453|fgenesh1_pm.C_scaffold_1001233
Length=966
Score = 1452 bits (786), Expect = 0.0
Identities = 909/969 (94%), Gaps = 6/969 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGATTTTCACTAAGGTTTGTGCTAATGATGGTGAGCATCATCCTCACG-TCATC 59
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||
Sbjct 1 ATGGAGAGATTTTCACTAAGGTTTGTGCTAATGATGGTAAGCATCATCCTTACGTTC-TC 59
Query 60 GATTTGTCAAGCACAACTTTCTCCAACATTCTACGATCAATCGTGTCGGAATGCTCTTTC 119
|||||||||||| ||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 60 GATTTGTCAAGCCCAACTTTCTCCAACATTTTACGATCAATCGTGTCCGAGCGCTCTTTC 119
Query 120 GAAGATCAGATCCTCCGTTAGAACGGCCATCGCTCGTGAGAGAAGAATGGCCGCGTCTCT 179
||||||||||||||| ||||||| || ||| ||||||||||| ||||||||||||| ||
Sbjct 120 CAAGATCAGATCCTCCATTAGAACCGCAATCACTCGTGAGAGACGAATGGCCGCGTCCCT 179
Query 180 AATCCGCATGCACTTCCATGACTGTTTTGTTCATGGGTGTGACGCGTCGATATTGCTCGA 239
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 180 AATCCGCATGCACTTCCACGACTGTTTTGTTCATGGTTGTGACGCTTCGATATTGCTCGA 239
Query 240 GGGAACATCAACGATAGAGAGTGAACGAGATGCATTGCCAAACTTCAAATCAGTAAGAGG 299
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GGGAACATCAAAGATAGAGAGTGAGCGAGATGCATTGCCAAACTTCAAATCAGTAAGAGG 299
Query 300 TTTTGAAGTCATAGATAAAGCCAAATCCGAAGTCGAGAAAGTTTGTCCCGGCATTGTTTC 359
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 300 TTTTGAAGTCATAGATAAAGCCAAATCTGAAGTCGAGAAAGTTTGTCCGGGCATTGTTTC 359
Query 360 TTGCGCTGATATCATAGCGGTTGCGGCAAGAGACGCTTCTGAATACGTGGGAGGTCCAAA 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TTGCGCTGATATCATAGCGGTTGCGGCAAGAGATGCTTCTGAATACGTGGGAGGTCCAAA 419
Query 420 ATGGGCAGTGAAAGTCGGAA-GACGAGATTCGACAG-CTGCGTTCAAGGCTCTAGCAAAT 477
|||||||||||||||||||| || |||||||||| | | || || |||||| ||||||||
Sbjct 420 ATGGGCAGTGAAAGTCGGAAGGA-GAGATTCGAC-GACCGCATTTAAGGCTTTAGCAAAT 477
Query 478 AGTGGTGAACTCCCGGGATTTAAAGATACCCTTGATCAACTCTCAGGTCTTTTCAGCAAG 537
||||||||||| || || |||||||||| |||||| |||||||| ||||| |||||||||
Sbjct 478 AGTGGTGAACTTCCTGGCTTTAAAGATAACCTTGACCAACTCTCTGGTCTCTTCAGCAAG 537
Query 538 AAAGGTCTTAACACAAGAGACCTTGTTGCTCTTTCAGGAGCACACACCATAGGACAATCT 597
||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 538 AAAGGCCTTAACACTAGAGACCTTGTCGCTCTATCAGGAGCTCACACCATAGGACAATCT 597
Query 598 CAATGCTTCTTGTTCCGGGACAGGCTTTACGAGAACTCAAGCGACATCGACGCAGGATTT 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAATGCTTCTTATTCCGGGACAGGCTTTACGAGAACTCAAGCGACATCGACGCAGGATTT 657
Query 658 GCCAGCACACGCAAACGTCGATGCCCAACCGTGGGAGGTGATGGTAATCTGGCAGCATTG 717
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 658 GCCAGCACACGCAAACGTCGATGCCCAACCGTGGGAAGTGATGGGAATCTGGCAGCATTG 717
Query 718 GATCTAGTAACACCTAATTCTTTCGACAACAATTACTACAAAAACTTAATGCAAAAGAAA 777
||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 718 GATCTCGTGACACCTAATTCTTTCGACAACAATTACTACAAGAACCTAATGCAAAAGAAA 777
Query 778 GGACTATTAGTAACCGATCAAGTTTTGTTCGGGTCCGGTGCATCAACTGACGGCATTGTG 837
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 GGACTTTTAGTAACCGATCAAGTTTTGTTCGGATCCGGTGCATCAACTGACGGCATTGTG 837
Query 838 TCGGAATATAGCAAGAACCGGTCAAAATTCGCGGCAGATTTCGCAACAGCCATGATCAAG 897
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 TCGGAATATAGCAGGAACCGGTCAAAATTCGCTGCAGATTTCGCAACAGCCATGATCAAG 897
Query 898 ATGGGTAATATAGAACCTCTCACTGGCTCTAATGGAGAAATCAGAAAGATATGCAGCTTT 957
|||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 898 ATGGGTGATATTGAACCTCTCACCGGCTCTACCGGAGAAATCAGAAAGATATGCAGCTTT 957
Query 958 GTTAATTAA 966
|||||||||
Sbjct 958 GTTAATTAA 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5