BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14560.1
Length=1826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920352 jgi|Araly1|920352|scaffold_101633.1 1764 0.0
> Ahg920352 jgi|Araly1|920352|scaffold_101633.1
Length=1036
Score = 1764 bits (955), Expect = 0.0
Identities = 1009/1036 (97%), Gaps = 0/1036 (0%)
Strand=Plus/Plus
Query 609 TTTAACTTAGTTGAACTGAGATGGGTTCGTCACAAGGCTCCACACTCTCGGCTGATGTGA 668
||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 TTTGACTTAGTTGAATTGAGATGGGTTCGTCACAAGGCTCTACACTCTCGGCTGATGTGA 60
Query 669 TGAGCCTTGTGGATACATTGCCTGTGCTTGCAAAAACCCTTATCGCTGGAGGAGCTGCTG 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGAGCCTTGTGGATACATTGCCTGTGCTTGCAAAAACCCTTATCGCTGGAGGAGCTGCTG 120
Query 729 GGGCAATTGCTAAGACTGCTGTTGCACCTTTGGAAAGGATCAAAATTCTATTGCAGACTA 788
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GTGCAATTGCTAAGACTGCTGTTGCACCTTTGGAAAGGATCAAAATTCTGTTGCAGACTA 180
Query 789 GAACAAACGACTTTAAGACCCTTGGTGTGTCCCAGTCATTAAAGAAGGTGTTACAATTTG 848
||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 181 GAACAAACGACTTTAGGACCCTTGGTGTGTCCCAGTCACTAAAGAAGGTTTTACAATTTG 240
Query 849 ATGGTCCTCTCGGATTCTATAAAGGAAATGGGGCGAGTGTTATTCGGATTATTCCATATG 908
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 ATGGTCCTCTTGGATTCTATAAAGGAAACGGGGCGAGTGTTATTCGGATTATTCCATATG 300
Query 909 CCGCCCTTCATTACATGACGTATGAAGTTTATCGTGACTGGATTTTGGaaaaaaaTCTTC 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCGCCCTTCATTACATGACGTATGAAGTTTATCGTGACTGGATTTTGGAAAAAAATCTTC 360
Query 969 CCTTAGGTTCTGGTCCAATTGTTGATCTTGTGGCTGGTTCAGCTGCAGGTGGAACAGCAG 1028
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 CCTTAGGTTCTGGTCCAATTGTTGATCTTGTGGCTGGTTCAGCTGCAGGCGGAACAGCAG 420
Query 1029 TTTTGTGCACATATCCCCTTGATTTAGCTCGTACTAAGCTAGCTTACCAGGTTTCTGACA 1088
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTTGTGTACATATCCCCTTGATTTAGCTCGTACTAAGCTAGCTTACCAGGTTTCTGACA 480
Query 1089 CAAGACAGAGTCTCCGAGGTGGTGCGAATGGATTTTACCGTCAACCTACTTATTCAGGCA 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAGACAGAGTCTCCGAGGTGGTGCGAATGGATTTTACCGTCAACCTACTTATTCAGGCA 540
Query 1149 TAAAAGAGGTGCTTGCAATGGCTTATAAAGAAGGGGGACCACGCGGGCTATATCGTGGCA 1208
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 541 TAAAAGAGGTGCTTACAATGGCCTATAAAGAAGGGGGACCACGCGGGCTATATCGTGGTA 600
Query 1209 TAGGGCCAACGCTGATCGGGATCCTTCCTTACGCGGGGCTTAAGTTCTACATATATGAGG 1268
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 TAGGGCCAACGCTGATCGGCATCCTTCCTTACGCGGGCCTTAAGTTCTACATATATGAGG 660
Query 1269 AATTGAAAAGGCATGTTCCTGAAGAGCATCAAAACTCTGTTCGAATGCATCTACCATGTG 1328
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 AATTGAAAAGACATGTTCCTGAAGAGCATCAAAACTCTGTTCGAATGCATCTACCTTGTG 720
Query 1329 GAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGACGTTGTTAGGAGAC 1388
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 GAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGATGTTGTTAGGAGAC 780
Query 1389 AAATGCAGGTAGAGAATCTGCAACCTATGACGAGTGAAGGCAACAACAAGCGTTACAAGA 1448
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 781 AAATGCAGGTAGAGAATCTGCAGCCTATGACGAGCGAAGGCAACAACAAGCGTTACAAGA 840
Query 1449 ACACATTTGATGGGCTTAACACGATTGTTCGAACTCAGGGTTGGAAACAGTTGTTTGCTG 1508
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 841 ACACATTTGATGGGCTTAACACGATTGTTCGAACTCAGGGTTGGAGACAGTTGTTTGCTG 900
Query 1509 GTTTAAGCATCAACTACATTAAGATTGTTCCATCGGTTGCGATTGGATTCACAGTCTATG 1568
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTTTAAGCATCAACTACATCAAGATTGTTCCATCGGTTGCGATTGGATTCACAGTCTATG 960
Query 1569 AGTCGATGAAGTCATGGATGCGAATTCCACCGCGCGAGAGATCAAAGCCAGCATGAGGGT 1628
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 961 AGTCGATGAAGTCATGGATGCGAATTCCACCGCGAGAGAGATCAAAGCCAGCATGAGGAT 1020
Query 1629 CTTTGTTCCTTCACTC 1644
|||||||| |||||||
Sbjct 1021 CTTTGTTCATTCACTC 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68562441000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5