BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14560.1 Length=1826 Score E Sequences producing significant alignments: (Bits) Value Ahg920352 jgi|Araly1|920352|scaffold_101633.1 1764 0.0 > Ahg920352 jgi|Araly1|920352|scaffold_101633.1 Length=1036 Score = 1764 bits (955), Expect = 0.0 Identities = 1009/1036 (97%), Gaps = 0/1036 (0%) Strand=Plus/Plus Query 609 TTTAACTTAGTTGAACTGAGATGGGTTCGTCACAAGGCTCCACACTCTCGGCTGATGTGA 668 ||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 TTTGACTTAGTTGAATTGAGATGGGTTCGTCACAAGGCTCTACACTCTCGGCTGATGTGA 60 Query 669 TGAGCCTTGTGGATACATTGCCTGTGCTTGCAAAAACCCTTATCGCTGGAGGAGCTGCTG 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGAGCCTTGTGGATACATTGCCTGTGCTTGCAAAAACCCTTATCGCTGGAGGAGCTGCTG 120 Query 729 GGGCAATTGCTAAGACTGCTGTTGCACCTTTGGAAAGGATCAAAATTCTATTGCAGACTA 788 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 121 GTGCAATTGCTAAGACTGCTGTTGCACCTTTGGAAAGGATCAAAATTCTGTTGCAGACTA 180 Query 789 GAACAAACGACTTTAAGACCCTTGGTGTGTCCCAGTCATTAAAGAAGGTGTTACAATTTG 848 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| Sbjct 181 GAACAAACGACTTTAGGACCCTTGGTGTGTCCCAGTCACTAAAGAAGGTTTTACAATTTG 240 Query 849 ATGGTCCTCTCGGATTCTATAAAGGAAATGGGGCGAGTGTTATTCGGATTATTCCATATG 908 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 241 ATGGTCCTCTTGGATTCTATAAAGGAAACGGGGCGAGTGTTATTCGGATTATTCCATATG 300 Query 909 CCGCCCTTCATTACATGACGTATGAAGTTTATCGTGACTGGATTTTGGaaaaaaaTCTTC 968 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CCGCCCTTCATTACATGACGTATGAAGTTTATCGTGACTGGATTTTGGAAAAAAATCTTC 360 Query 969 CCTTAGGTTCTGGTCCAATTGTTGATCTTGTGGCTGGTTCAGCTGCAGGTGGAACAGCAG 1028 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 361 CCTTAGGTTCTGGTCCAATTGTTGATCTTGTGGCTGGTTCAGCTGCAGGCGGAACAGCAG 420 Query 1029 TTTTGTGCACATATCCCCTTGATTTAGCTCGTACTAAGCTAGCTTACCAGGTTTCTGACA 1088 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTTTGTGTACATATCCCCTTGATTTAGCTCGTACTAAGCTAGCTTACCAGGTTTCTGACA 480 Query 1089 CAAGACAGAGTCTCCGAGGTGGTGCGAATGGATTTTACCGTCAACCTACTTATTCAGGCA 1148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CAAGACAGAGTCTCCGAGGTGGTGCGAATGGATTTTACCGTCAACCTACTTATTCAGGCA 540 Query 1149 TAAAAGAGGTGCTTGCAATGGCTTATAAAGAAGGGGGACCACGCGGGCTATATCGTGGCA 1208 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 541 TAAAAGAGGTGCTTACAATGGCCTATAAAGAAGGGGGACCACGCGGGCTATATCGTGGTA 600 Query 1209 TAGGGCCAACGCTGATCGGGATCCTTCCTTACGCGGGGCTTAAGTTCTACATATATGAGG 1268 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 601 TAGGGCCAACGCTGATCGGCATCCTTCCTTACGCGGGCCTTAAGTTCTACATATATGAGG 660 Query 1269 AATTGAAAAGGCATGTTCCTGAAGAGCATCAAAACTCTGTTCGAATGCATCTACCATGTG 1328 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 661 AATTGAAAAGACATGTTCCTGAAGAGCATCAAAACTCTGTTCGAATGCATCTACCTTGTG 720 Query 1329 GAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGACGTTGTTAGGAGAC 1388 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 721 GAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGATGTTGTTAGGAGAC 780 Query 1389 AAATGCAGGTAGAGAATCTGCAACCTATGACGAGTGAAGGCAACAACAAGCGTTACAAGA 1448 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 781 AAATGCAGGTAGAGAATCTGCAGCCTATGACGAGCGAAGGCAACAACAAGCGTTACAAGA 840 Query 1449 ACACATTTGATGGGCTTAACACGATTGTTCGAACTCAGGGTTGGAAACAGTTGTTTGCTG 1508 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 841 ACACATTTGATGGGCTTAACACGATTGTTCGAACTCAGGGTTGGAGACAGTTGTTTGCTG 900 Query 1509 GTTTAAGCATCAACTACATTAAGATTGTTCCATCGGTTGCGATTGGATTCACAGTCTATG 1568 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 901 GTTTAAGCATCAACTACATCAAGATTGTTCCATCGGTTGCGATTGGATTCACAGTCTATG 960 Query 1569 AGTCGATGAAGTCATGGATGCGAATTCCACCGCGCGAGAGATCAAAGCCAGCATGAGGGT 1628 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 961 AGTCGATGAAGTCATGGATGCGAATTCCACCGCGAGAGAGATCAAAGCCAGCATGAGGAT 1020 Query 1629 CTTTGTTCCTTCACTC 1644 |||||||| ||||||| Sbjct 1021 CTTTGTTCATTCACTC 1036 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68562441000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5