BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14570.2
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920353 jgi|Araly1|920353|scaffold_101634.1 2266 0.0
Ahg894922 jgi|Araly1|894922|Al_scaffold_0006_2918 196 4e-49
Ahg942688 jgi|Araly1|942688|scaffold_603232.1 172 6e-42
Ahg922908 jgi|Araly1|922908|scaffold_104189.1 171 2e-41
> Ahg920353 jgi|Araly1|920353|scaffold_101634.1
Length=1461
Score = 2266 bits (1227), Expect = 0.0
Identities = 1386/1460 (95%), Gaps = 21/1460 (1%)
Strand=Plus/Plus
Query 185 TAGGG-TTGTGGTCTTAGCAATGGAAGGAATGTTGTCGTCCGGTGACCAACAGAGATTAG 243
||||| ||||||||||| ||||||| ||||||||||| || |||||||||||||||||||
Sbjct 2 TAGGGTTTGTGGTCTTAACAATGGAGGGAATGTTGTCTTCGGGTGACCAACAGAGATTAG 61
Query 244 TCTCTTCTTTCCTTGAAATCGCCGTCGGACAGACCGCCGAAACTGCTCGACAGTTCTTAC 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 62 TCTCTTCTTTCCTTGAAATCGCCGTCGGACAGACCGCTGAAACTGCTCGACAGTTCTTAC 121
Query 304 AGGCGACAAGCTGGAAACTTGAGGAAGCTATTCAGCTCTTTTACATTGGAAATGAAGGTG 363
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 122 AGGCGACAAGCTGGAAACTTGAGGAAGCTATTCAGCTTTTTTACATTGGAAACGAAGGTG 181
Query 364 GTATGCTT-CAGTCTGGTACACACACTCAGCCAGCGTCCAACGATG-ATGCGGCTGCACA 421
|||||||| || |||||||||||||||||||||||||| ||||| | | | |||||||||
Sbjct 182 GTATGCTTCCA-TCTGGTACACACACTCAGCCAGCGTCTAACGA-GCACGTGGCTGCACA 239
Query 422 GTCTTGGGGGGCGGCTACAGGCACAGGTAATGAAATGATACTGCCCAACGATGTCGATGA 481
|||||||||||||||||||||||||| || |||| |||| ||| |||||||| |||||
Sbjct 240 ATCTTGGGGGGCGGCTACAGGCACAGGAAACGAAAGGATAATGCAGAACGATGTAGATGA 299
Query 482 AGTCCGTGCTCCTTTACCTGTTGTGAGGGAGACTCTTTATGGTGAATCAATGTATTATGG 541
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 AGTCCGTGCTCCTTTACCTGTTGTGAGGGAGACTCTTTATGGTGAATCAGTGTATTATGG 359
Query 542 GGCTATGAGGGTGGGTAACTCTCAGCCTGAACCAAATTCTTTGATTGCTTTCCGTAACTT 601
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GACTATGAGGGTGGGAAACTCTCAGCCTGAACCAAATTCTTTGATTGCTTTCCGTAACTT 419
Query 602 CAGTGAAGAGCCAAAAAGCCCTGGAATTTGGGAACCAGATGAGGGTGA----T-T-CCTC 655
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 420 CAGTGAAGAGCCAAAAAGCCCTGGAATTTGGGAACCAGATGAGGGTGATTCCTCTGCCTC 479
Query 656 AGCCTCTGCCTCAG-C-AT--C-C-GCATCTGCATCAGAGTCAGCATCCGCACCTCGGGA 709
|||||| ||||||| | | | | || || ||||||||||||||||| || ||||||||
Sbjct 480 AGCCTCAGCCTCAGCCTCTGCCTCTGCCTCCGCATCAGAGTCAGCATCTGCTCCTCGGGA 539
Query 710 CAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCACCTGATGTTCCAGGGCTCTTTTGAACA 769
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 540 CAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCATCTGATGTTCCATGGCTCTTTTGAACA 599
Query 770 GGCAAAAACTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCAC 829
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGCAAAAGCTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCAC 659
Query 830 GGAATTCAGCTCTCATATGCTAAATCGAGATACTTGGGCGAATGATGCTGTTTCTCAGAC 889
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAATTCAGCTCTCATATGCTAAATCGAGATACTTGGGCGAATGATGCTGTTTCTCAGAC 719
Query 890 TATCAAAGCCAACTTCATCTTCTGGCAGGTCTATGATGATACCACGGAAGGAAGAAAGGT 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATCAAAGCCAACTTCATCTTCTGGCAGGTCTATGATGATACCACGGAAGGAAGAAAGGT 779
Query 950 TTGCACATACTACAAGCTCGAATCTATTCCCGTGGTGCTTGTAATTGATCCAACCACTGG 1009
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 TTGCACATACTACAAGCTTGAATCTATTCCTGTGGTGCTTGTAATTGATCCAACCACTGG 839
Query 1010 TCAAAGAATGAGAATGTGGACCGGAATGGTTGA-CCCTGAGAATTTGCTAGAGGATTTAG 1068
|||||| |||||||| |||| |||||||||||| ||| |||||| |||| ||||||||||
Sbjct 840 TCAAAGGATGAGAATCTGGAGCGGAATGGTTGAACCC-GAGAATCTGCTGGAGGATTTAG 898
Query 1069 TGCCGTTCATGGATGGTGGTCCTCGTGAACACTTTGCTTCTCTCTCAAAGAAGCGGCCAA 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGCCGTTCATGGATGGTGGTCCTCGTGAACACTTTGCTTCTCTCTCAAAGAAGCGGCCAA 958
Query 1129 GAGGCAGCTTCTCATTGACTCCTCATTCCAAACCCAAAGAGGATGTTGCAAAAGATGAAG 1188
|||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 GAGGAAGCTTCTCATTGGCTCCTCATTCCAATCCCAAAGAGGATGTTGCAAAAGATGAAG 1018
Query 1189 AAGAAGAGGAACTGCAACGAGCATTAGCTGCTTCCTTGGAAGATAACAACATGAAAGAGT 1248
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1019 AAGAAGAAGAACTGCAACGAGCATTAGCTGCTTCCTTGGAAGATAACAGCATGAAAGAGT 1078
Query 1249 CTTCAGATGATCAATCAACAATAATACCTGAAGAAGTAGCAGTTGAAGCAGTTACATCCG 1308
|||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 1079 CTTCAGATGATCAATCAACAATGACGCCTGAAGAAGTAGCGGTTGAAGCAGTTACATCCG 1138
Query 1309 CGGTCCTGCCAACATTCCCACCACTGCCGGAAGAACCAAAGGGAGGCGATCGCAGCCTAC 1368
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 CGGTGCTGCCAACATTCCCACCACTGCCAGAAGAACCAAAGGGAGGCGATCGCAGCCTAC 1198
Query 1369 AATGCAGAGTTGGGATCCGTTTACCTAACGGACAAAGACTCCAGAGGAATTTCCTCAAAA 1428
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1199 AATGCAGAGTTGGGATCCGTTTACCCAACGGACAAAGACTCCAGAGAAATTTCCTCAAAA 1258
Query 1429 CAGACACAATTCAGCTTCTCTGGTCATTCTGCTATTCCCAGCTTGAGGAATCAGAGAGGA 1488
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1259 CAGACACAATTCAGCTTCTCTGGTCATTCTGCTATTCTCAGCTTGAGGAATCAGAGAGGA 1318
Query 1489 AGAAGCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAGACATTGGAGTATGAAT 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AGAAGCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAGACATTGGAGTATGAAT 1378
Query 1549 CTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTCCATGATCTCTGCTACGTGGGAAT 1608
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1379 CTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTCCATGATCTCTGCTACATGGGAAT 1438
Query 1609 GAAATATCATCATATCTATA 1628
|||||||||| ||||||||
Sbjct 1439 GAAATATCAT--TATCTATA 1456
> Ahg894922 jgi|Araly1|894922|Al_scaffold_0006_2918
Length=1002
Score = 196 bits (106), Expect = 4e-49
Identities = 127/137 (93%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 710 CAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCACCTGATGTTCCAGGGCTCTTTTGAACA 769
|||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 366 CAGCTTGGCCTCATTGTACCGTCCTCCTTTTCATCTCATGTTCCATGGCTCTTTTGAACA 425
Query 770 GGCAAAAACTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCAC 829
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 426 GGCAAAAGCTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATATACCAG 485
Query 830 GGAATTCAGCT-CTCAT 845
|||||||| || |||||
Sbjct 486 GGAATTCA-CTTCTCAT 501
Score = 134 bits (72), Expect = 3e-30
Identities = 107/124 (86%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 917 GGTCTATGATGATACCACGGAAGGAAGAAAGGTTTGCACATACTACAAGCTCGAATCTAT 976
|||| ||| |||| | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 504 GGTCGATGGTGATTCAACAGAAGGAAGAAAGGTTTGCACATACTACAAGCTTGAATCTAT 563
Query 977 TCCCGTGGTGCTTGTAATTGATCCAACCACTGGTCAAA-GAATGAGAATGTGGACCGGAA 1035
|||| ||||||||||||| ||||||||||||||||| || ||| || |||| ||||
Sbjct 564 TCCCTTGGTGCTTGTAATCAATCCAACCACTGGTCAAGCGA-TGAAAAAGTGGTTTGGAA 622
Query 1036 TGGT 1039
||||
Sbjct 623 TGGT 626
> Ahg942688 jgi|Araly1|942688|scaffold_603232.1
Length=235
Score = 172 bits (93), Expect = 6e-42
Identities = 154/181 (85%), Gaps = 14/181 (8%)
Strand=Plus/Plus
Query 1446 CTCTGGTCATTCTGCTATTCCCAGCT-TGA-GGAATCAGAGAGGAAGAAGCCATTGAAGC 1503
|||||||| ||||||||||| | | | | | | |||||||||||||||||||||||||||
Sbjct 44 CTCTGGTCTTTCTGCTATTCTC-G-TCTAACGAAATCAGAGAGGAAGAAGCCATTGAAGC 101
Query 1504 TAACACAAGC-GATTCCAGGTGAATCAAAG------ACATTGGAGTATGAATCTAACTTA 1556
|||||| | | |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 102 TAACACGA-CTGATTCCAGGTCAATCAAAGACAATTACATTGGAGTATGAATCTAACTTA 160
Query 1557 ACCTTGGAGCAGTCTGGTGTTGCCAATTCCAT-GATCTCTGCTACGTGGGAATGAAATAT 1615
||||| ||||| |||||||||||||||||| | | | | |||||| ||||||||||| ||
Sbjct 161 ACCTTTGAGCAATCTGGTGTTGCCAATTCCCTCG-TGTTTGCTACATGGGAATGAAAAAT 219
Query 1616 C 1616
|
Sbjct 220 C 220
> Ahg922908 jgi|Araly1|922908|scaffold_104189.1
Length=446
Score = 171 bits (92), Expect = 2e-41
Identities = 142/164 (87%), Gaps = 12/164 (7%)
Strand=Plus/Plus
Query 1477 AAT-CAGAGAGGAAGAA-GCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAG-- 1532
||| ||||||||||||| ||||||||||||||||| || |||||||||| ||||||||
Sbjct 284 AATCCAGAGAGGAAGAACGCCATTGAAGCTAACACGAGTGATTCCAGGTCAATCAAAGAC 343
Query 1533 ----ACATTGGAGTATGAATCTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTC-CA 1587
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 344 AATTACATTGGAGTATGAATCTAACTTAACCTTTGAGCAATCTGGTGTTGCCAATTCTCT 403
Query 1588 TGATCTCTGCTACGTGGGAATGAAATATC--ATCATATCTATAA 1629
|| ||| |||||| ||||||||||| ||| ||| |||||||||
Sbjct 404 TG-TCTTTGCTACATGGGAATGAAAAATCTTATCTTATCTATAA 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5