BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14570.2 Length=1793 Score E Sequences producing significant alignments: (Bits) Value Ahg920353 jgi|Araly1|920353|scaffold_101634.1 2266 0.0 Ahg894922 jgi|Araly1|894922|Al_scaffold_0006_2918 196 4e-49 Ahg942688 jgi|Araly1|942688|scaffold_603232.1 172 6e-42 Ahg922908 jgi|Araly1|922908|scaffold_104189.1 171 2e-41 > Ahg920353 jgi|Araly1|920353|scaffold_101634.1 Length=1461 Score = 2266 bits (1227), Expect = 0.0 Identities = 1386/1460 (95%), Gaps = 21/1460 (1%) Strand=Plus/Plus Query 185 TAGGG-TTGTGGTCTTAGCAATGGAAGGAATGTTGTCGTCCGGTGACCAACAGAGATTAG 243 ||||| ||||||||||| ||||||| ||||||||||| || ||||||||||||||||||| Sbjct 2 TAGGGTTTGTGGTCTTAACAATGGAGGGAATGTTGTCTTCGGGTGACCAACAGAGATTAG 61 Query 244 TCTCTTCTTTCCTTGAAATCGCCGTCGGACAGACCGCCGAAACTGCTCGACAGTTCTTAC 303 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 62 TCTCTTCTTTCCTTGAAATCGCCGTCGGACAGACCGCTGAAACTGCTCGACAGTTCTTAC 121 Query 304 AGGCGACAAGCTGGAAACTTGAGGAAGCTATTCAGCTCTTTTACATTGGAAATGAAGGTG 363 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 122 AGGCGACAAGCTGGAAACTTGAGGAAGCTATTCAGCTTTTTTACATTGGAAACGAAGGTG 181 Query 364 GTATGCTT-CAGTCTGGTACACACACTCAGCCAGCGTCCAACGATG-ATGCGGCTGCACA 421 |||||||| || |||||||||||||||||||||||||| ||||| | | | ||||||||| Sbjct 182 GTATGCTTCCA-TCTGGTACACACACTCAGCCAGCGTCTAACGA-GCACGTGGCTGCACA 239 Query 422 GTCTTGGGGGGCGGCTACAGGCACAGGTAATGAAATGATACTGCCCAACGATGTCGATGA 481 |||||||||||||||||||||||||| || |||| |||| ||| |||||||| ||||| Sbjct 240 ATCTTGGGGGGCGGCTACAGGCACAGGAAACGAAAGGATAATGCAGAACGATGTAGATGA 299 Query 482 AGTCCGTGCTCCTTTACCTGTTGTGAGGGAGACTCTTTATGGTGAATCAATGTATTATGG 541 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 300 AGTCCGTGCTCCTTTACCTGTTGTGAGGGAGACTCTTTATGGTGAATCAGTGTATTATGG 359 Query 542 GGCTATGAGGGTGGGTAACTCTCAGCCTGAACCAAATTCTTTGATTGCTTTCCGTAACTT 601 | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GACTATGAGGGTGGGAAACTCTCAGCCTGAACCAAATTCTTTGATTGCTTTCCGTAACTT 419 Query 602 CAGTGAAGAGCCAAAAAGCCCTGGAATTTGGGAACCAGATGAGGGTGA----T-T-CCTC 655 |||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 420 CAGTGAAGAGCCAAAAAGCCCTGGAATTTGGGAACCAGATGAGGGTGATTCCTCTGCCTC 479 Query 656 AGCCTCTGCCTCAG-C-AT--C-C-GCATCTGCATCAGAGTCAGCATCCGCACCTCGGGA 709 |||||| ||||||| | | | | || || ||||||||||||||||| || |||||||| Sbjct 480 AGCCTCAGCCTCAGCCTCTGCCTCTGCCTCCGCATCAGAGTCAGCATCTGCTCCTCGGGA 539 Query 710 CAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCACCTGATGTTCCAGGGCTCTTTTGAACA 769 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 540 CAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCATCTGATGTTCCATGGCTCTTTTGAACA 599 Query 770 GGCAAAAACTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCAC 829 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GGCAAAAGCTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCAC 659 Query 830 GGAATTCAGCTCTCATATGCTAAATCGAGATACTTGGGCGAATGATGCTGTTTCTCAGAC 889 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AGAATTCAGCTCTCATATGCTAAATCGAGATACTTGGGCGAATGATGCTGTTTCTCAGAC 719 Query 890 TATCAAAGCCAACTTCATCTTCTGGCAGGTCTATGATGATACCACGGAAGGAAGAAAGGT 949 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TATCAAAGCCAACTTCATCTTCTGGCAGGTCTATGATGATACCACGGAAGGAAGAAAGGT 779 Query 950 TTGCACATACTACAAGCTCGAATCTATTCCCGTGGTGCTTGTAATTGATCCAACCACTGG 1009 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 780 TTGCACATACTACAAGCTTGAATCTATTCCTGTGGTGCTTGTAATTGATCCAACCACTGG 839 Query 1010 TCAAAGAATGAGAATGTGGACCGGAATGGTTGA-CCCTGAGAATTTGCTAGAGGATTTAG 1068 |||||| |||||||| |||| |||||||||||| ||| |||||| |||| |||||||||| Sbjct 840 TCAAAGGATGAGAATCTGGAGCGGAATGGTTGAACCC-GAGAATCTGCTGGAGGATTTAG 898 Query 1069 TGCCGTTCATGGATGGTGGTCCTCGTGAACACTTTGCTTCTCTCTCAAAGAAGCGGCCAA 1128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TGCCGTTCATGGATGGTGGTCCTCGTGAACACTTTGCTTCTCTCTCAAAGAAGCGGCCAA 958 Query 1129 GAGGCAGCTTCTCATTGACTCCTCATTCCAAACCCAAAGAGGATGTTGCAAAAGATGAAG 1188 |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 959 GAGGAAGCTTCTCATTGGCTCCTCATTCCAATCCCAAAGAGGATGTTGCAAAAGATGAAG 1018 Query 1189 AAGAAGAGGAACTGCAACGAGCATTAGCTGCTTCCTTGGAAGATAACAACATGAAAGAGT 1248 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1019 AAGAAGAAGAACTGCAACGAGCATTAGCTGCTTCCTTGGAAGATAACAGCATGAAAGAGT 1078 Query 1249 CTTCAGATGATCAATCAACAATAATACCTGAAGAAGTAGCAGTTGAAGCAGTTACATCCG 1308 |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| Sbjct 1079 CTTCAGATGATCAATCAACAATGACGCCTGAAGAAGTAGCGGTTGAAGCAGTTACATCCG 1138 Query 1309 CGGTCCTGCCAACATTCCCACCACTGCCGGAAGAACCAAAGGGAGGCGATCGCAGCCTAC 1368 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1139 CGGTGCTGCCAACATTCCCACCACTGCCAGAAGAACCAAAGGGAGGCGATCGCAGCCTAC 1198 Query 1369 AATGCAGAGTTGGGATCCGTTTACCTAACGGACAAAGACTCCAGAGGAATTTCCTCAAAA 1428 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1199 AATGCAGAGTTGGGATCCGTTTACCCAACGGACAAAGACTCCAGAGAAATTTCCTCAAAA 1258 Query 1429 CAGACACAATTCAGCTTCTCTGGTCATTCTGCTATTCCCAGCTTGAGGAATCAGAGAGGA 1488 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1259 CAGACACAATTCAGCTTCTCTGGTCATTCTGCTATTCTCAGCTTGAGGAATCAGAGAGGA 1318 Query 1489 AGAAGCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAGACATTGGAGTATGAAT 1548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 AGAAGCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAGACATTGGAGTATGAAT 1378 Query 1549 CTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTCCATGATCTCTGCTACGTGGGAAT 1608 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1379 CTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTCCATGATCTCTGCTACATGGGAAT 1438 Query 1609 GAAATATCATCATATCTATA 1628 |||||||||| |||||||| Sbjct 1439 GAAATATCAT--TATCTATA 1456 > Ahg894922 jgi|Araly1|894922|Al_scaffold_0006_2918 Length=1002 Score = 196 bits (106), Expect = 4e-49 Identities = 127/137 (93%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 710 CAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCACCTGATGTTCCAGGGCTCTTTTGAACA 769 |||| ||||||| |||||||||||||||||||| || |||||||| |||||||||||||| Sbjct 366 CAGCTTGGCCTCATTGTACCGTCCTCCTTTTCATCTCATGTTCCATGGCTCTTTTGAACA 425 Query 770 GGCAAAAACTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCAC 829 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 426 GGCAAAAGCTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATATACCAG 485 Query 830 GGAATTCAGCT-CTCAT 845 |||||||| || ||||| Sbjct 486 GGAATTCA-CTTCTCAT 501 Score = 134 bits (72), Expect = 3e-30 Identities = 107/124 (86%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 917 GGTCTATGATGATACCACGGAAGGAAGAAAGGTTTGCACATACTACAAGCTCGAATCTAT 976 |||| ||| |||| | || |||||||||||||||||||||||||||||||| |||||||| Sbjct 504 GGTCGATGGTGATTCAACAGAAGGAAGAAAGGTTTGCACATACTACAAGCTTGAATCTAT 563 Query 977 TCCCGTGGTGCTTGTAATTGATCCAACCACTGGTCAAA-GAATGAGAATGTGGACCGGAA 1035 |||| ||||||||||||| ||||||||||||||||| || ||| || |||| |||| Sbjct 564 TCCCTTGGTGCTTGTAATCAATCCAACCACTGGTCAAGCGA-TGAAAAAGTGGTTTGGAA 622 Query 1036 TGGT 1039 |||| Sbjct 623 TGGT 626 > Ahg942688 jgi|Araly1|942688|scaffold_603232.1 Length=235 Score = 172 bits (93), Expect = 6e-42 Identities = 154/181 (85%), Gaps = 14/181 (8%) Strand=Plus/Plus Query 1446 CTCTGGTCATTCTGCTATTCCCAGCT-TGA-GGAATCAGAGAGGAAGAAGCCATTGAAGC 1503 |||||||| ||||||||||| | | | | | | ||||||||||||||||||||||||||| Sbjct 44 CTCTGGTCTTTCTGCTATTCTC-G-TCTAACGAAATCAGAGAGGAAGAAGCCATTGAAGC 101 Query 1504 TAACACAAGC-GATTCCAGGTGAATCAAAG------ACATTGGAGTATGAATCTAACTTA 1556 |||||| | | |||||||||| |||||||| |||||||||||||||||||||||| Sbjct 102 TAACACGA-CTGATTCCAGGTCAATCAAAGACAATTACATTGGAGTATGAATCTAACTTA 160 Query 1557 ACCTTGGAGCAGTCTGGTGTTGCCAATTCCAT-GATCTCTGCTACGTGGGAATGAAATAT 1615 ||||| ||||| |||||||||||||||||| | | | | |||||| ||||||||||| || Sbjct 161 ACCTTTGAGCAATCTGGTGTTGCCAATTCCCTCG-TGTTTGCTACATGGGAATGAAAAAT 219 Query 1616 C 1616 | Sbjct 220 C 220 > Ahg922908 jgi|Araly1|922908|scaffold_104189.1 Length=446 Score = 171 bits (92), Expect = 2e-41 Identities = 142/164 (87%), Gaps = 12/164 (7%) Strand=Plus/Plus Query 1477 AAT-CAGAGAGGAAGAA-GCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAG-- 1532 ||| ||||||||||||| ||||||||||||||||| || |||||||||| |||||||| Sbjct 284 AATCCAGAGAGGAAGAACGCCATTGAAGCTAACACGAGTGATTCCAGGTCAATCAAAGAC 343 Query 1533 ----ACATTGGAGTATGAATCTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTC-CA 1587 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | Sbjct 344 AATTACATTGGAGTATGAATCTAACTTAACCTTTGAGCAATCTGGTGTTGCCAATTCTCT 403 Query 1588 TGATCTCTGCTACGTGGGAATGAAATATC--ATCATATCTATAA 1629 || ||| |||||| ||||||||||| ||| ||| ||||||||| Sbjct 404 TG-TCTTTGCTACATGGGAATGAAAAATCTTATCTTATCTATAA 446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67305462915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5