BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14580.1
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312456 jgi|Araly1|312456|fgenesh1_pm.C_scaffold_1001236 1195 0.0
Ahg935945 jgi|Araly1|935945|scaffold_500136.1 573 2e-162
Ahg935944 jgi|Araly1|935944|scaffold_500135.1 503 2e-141
Ahg485418 jgi|Araly1|485418|fgenesh2_kg.5__1410__AT3G50700.1 230 4e-59
> Ahg312456 jgi|Araly1|312456|fgenesh1_pm.C_scaffold_1001236
Length=1485
Score = 1195 bits (647), Expect = 0.0
Identities = 771/829 (93%), Gaps = 16/829 (2%)
Strand=Plus/Plus
Query 836 TCTA-GGAGAGACAGTTACATCACCCACAGGGCATTCTGTGATGCACTCATACAGGAGTC 894
|||| |||||||||||||||| || ||| ||||||||||||||||||| |||||||||||
Sbjct 669 TCTAGGGAGAGACAGTTACATTACGCACCGGGCATTCTGTGATGCACTAATACAGGAGTC 728
Query 895 AGCAAGAAACCCCACCGTGAGCTTCACGGCAATGGCAGCTGGTGGTGGTGGTGGCGCCAG 954
|||||||||||| |||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 729 AGCAAGAAACCCTACCGTGAGCTTCACGGCAATGGCAGCTGCTGGTGGTGGCGGTGCCAG 788
Query 955 ACATGGCTTTTACGGCGGAGCTTCTTCCGCTCTCTCTCACAACCATTTCGGTAACAATCC 1014
|||||||||||||||||||||||||| |||| ||||||||||| |||||| |||||| |
Sbjct 789 GCATGGCTTTTACGGCGGAGCTTCTTCTGCTCACTCTCACAACCTTTTCGGCAACAATTC 848
Query 1015 AAATTCCGGTTTCACCCCTCTAGCTGCTGCAGGCTACAATCTGAACCGTTCATCTTCCGA 1074
||| |||||||| ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 849 AAACTCCGGTTTTACCCCTCTA---GCTGCAGGTTACAATCTGAACCGTTCATCTTCCGA 905
Query 1075 CAAGTTCGAAGACTTCGTTCCTCAGGCCACCAACCCTAATCCCGGTCCGACCAACTTCCT 1134
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 906 CAAGTTCGAAGACTTCGTTCCTCAGTCCACAAACCCTAATCCCGGTCCGACCAACTTCCT 965
Query 1135 CATGCAATGCTCTCCGAACCAAGGACTGTTAGCCCAGAACAATCAGAGTCTCATGAACCA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CATGCAATGCTCTCCGAACCAAGGACTGTTAGCCCAGAACAATCAGAGTCTCATGAACCA 1025
Query 1195 TCATGGTCTGATCAGCCTCGGTGATAACAACAACAACAACCACAACTTTTTCAACCTCGC 1254
|| ||||||||||||||||||||||||| | |||| | ||||||| |||||| |||
Sbjct 1026 GCACGGTCTGATCAGCCTCGGTGATAACA-C--CAAC--C-ACAACTTGTTCAACATCGG 1079
Query 1255 ATACTTTCAAGACACCAAGAATTCTGATCAGACAGGTGTTCCTTCTCTGTTCACCAATGG 1314
||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 1080 ATACTTTCAAGACACCAAGAACTCTGATCAGATAGGTGTTCCTTCTCTTTTCACCAATGG 1139
Query 1315 TGCTGATAACAACGGCCCATCTGCTTTGCTTAGAGGGCTAACTTCTTCATCTTCGTC-AA 1373
|||||||||||||| |||||||||||| ||||||||| |||||||||||||||| || ||
Sbjct 1140 TGCTGATAACAACGACCCATCTGCTTTCCTTAGAGGGTTAACTTCTTCATCTTC-TCCAA 1198
Query 1374 GTGTGGTCGTTAATGACTTTGGAGATTGTGATCATGGAAACCTTCAAGGACTCATGAACT 1433
||||||||||||||||||||||||| ||||| |||||||||||||||| || |||||||
Sbjct 1199 ATGTGGTCGTTAATGACTTTGGAGATAGTGATAATGGAAACCTTCAAGGTCTGATGAACT 1258
Query 1434 CTCTAGCTGCGACAACAGATCAACAAGGCCGGTCCC-CTAGCCTTTTCGACCTTCATTTC 1492
|||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1259 CTCTAGCTGCGACAACAGATCAACAAGGCCGG-CCCACTAGCCTTCTCGACCTTCATTTC 1317
Query 1493 GCAAACAATCTTAGCATGGGTGGCT-CGGATAGGTTGACTTTGGACTTTCTTGGTGTTAA 1551
| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1318 GGAAACAATCTTAGCATGGGAGG-TGCGGATAGGTTGACTTTGGACTTTCTTGGTGTTAA 1376
Query 1552 TGGAGGAATTGTGAGCACCGTCAATGGCCGTGGTGGTCGTAGTGGTGGACCTCCTCTGGA 1611
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1377 TGGAGGAATTGTGAGCACCGTCAATGGTCGTGGTGGTCGTGGTGGTGGACCTCCTCTGGA 1436
Query 1612 TGCTGAGATGAAGTTTTCACACCCAAATCATCCATATGGCAAAGCTTGA 1660
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1437 CGCTGAGATGAAGTTTTCACACCCAAATCATCCATTTGGCAAAGCTTGA 1485
Score = 586 bits (317), Expect = 2e-166
Identities = 338/348 (97%), Gaps = 1/348 (0%)
Strand=Plus/Plus
Query 500 TTCCTATGTGAAGTGTGCAACAAAGGGTTCCAGAGGGAACAGAATCTGCAGCTCCACAGG 559
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 190 TTCCTATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAACAGAATCTGCAGCTTCACAGG 249
Query 560 AGGGGACACAACCTTCCATGGAAGCTGAAACAAAAGTCCAACAAAGAGGTGAGGAGGAAG 619
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 250 AGGGGACACAACCTTCCATGGAAGCTGAAACAAAAGTCCAACAAAGAAGTGAGGAGGAAG 309
Query 620 GTGTACCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACCCCGCACGTGCTCTCGGAGAC 679
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 310 GTGTACCTTTGCCCGGAGGCCTCGTGCGTCCACCATGACCCGGCACGTGCTCTCGGAGAC 369
Query 680 CTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGAGAAAAAGTGGAAGTGCGAT 739
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 370 CTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGAGAAGAAGTGGAAGTGCGAT 429
Query 740 AAGTGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGACCTGTGGT 799
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AAATGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGACCTGTGGT 489
Query 800 ACCAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAG-GAGAGA 846
||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 490 ACCAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGTGAAAGA 537
Score = 248 bits (134), Expect = 1e-64
Identities = 170/187 (91%), Gaps = 3/187 (2%)
Strand=Plus/Plus
Query 257 ATGTCTTCATCGTACAACACAATTGCTTTGTCCTCCACTCCGACCTTCCTCCTCTCAAGT 316
|||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| ||
Sbjct 1 ATGTCTTCATCGTACAACACAATTGCTTCATCCTCCGCTCAGACCTTCCTCCTCTCAGGT 60
Query 317 GCCGCTGCCGGACCCGGACCAAACAACTTTAACCGTCAAGAGGCTGCGATGACCATGGTT 376
|||||| ||||| || |||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 61 GCCGCTTCCGGAGCCAGACCAAACAACTTTAACCGTGAAGAGGCTGCGAGGACCATGATT 120
Query 377 CAACAACAACCCACTTCCTCCGTTGCTCCACCACCCAAGAAGCGAAGGAACCAACCCGGA 436
||||||| || ||| |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 121 CAACAAC--CCAACT-CCTCCGTTACTCCACCACCCAAGAAGCGTAGGAACCAACCCGGA 177
Query 437 AACCCAA 443
|||||||
Sbjct 178 AACCCAA 184
> Ahg935945 jgi|Araly1|935945|scaffold_500136.1
Length=1688
Score = 573 bits (310), Expect = 2e-162
Identities = 467/542 (86%), Gaps = 14/542 (3%)
Strand=Plus/Plus
Query 401 GCTCCACCACCCAAGAAGCGAAGGAACCAACCCGGAAACCCAAATCCAGATGCTGAAGTG 460
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 268 GCTCCACCACCCAAGAAACGAAGAAACCAACCCGGAAACCCAAATCCTGATGCAGAAGTG 327
Query 461 ATAGCGTTATCGCCAAAGACGA-TAATGGCGACGAACAGGTTCCTATGTGAAGTGTGCAA 519
|||| ||||| |||||||| | ||||||| || ||||| ||| ||||||| || |||||
Sbjct 328 GTAGCATTATCTCCAAAGAC-ACTAATGGCTACAAACAGATTCATATGTGATGTATGCAA 386
Query 520 CAAAGGGTTCCAGAGGGAACAGAATCTGCAGCTCCACAGGAGGGGACACAACCTTCCATG 579
|||||| || || || ||||| ||||| ||||| ||| | || |||||||| || |||||
Sbjct 387 CAAAGGATTTCAAAGAGAACAAAATCTACAGCTTCACCGAAGAGGACACAATCTCCCATG 446
Query 580 GAAGCTGAAACAAAAGTCCAA-CAAAGAGGTGAGGAGGAAGGTGTACCTTTGTCCGGAGC 638
|||||||||||| |||| ||| |||||| |||| |||||| || || |||||||||||||
Sbjct 447 GAAGCTGAAACAGAAGT-CAACCAAAGAAGTGAAGAGGAAAGTATATCTTTGTCCGGAGC 505
Query 639 CCTCGTGCGTCCACCATGACCCCG-CACGTGCTCTCGGAGACCTCACCGGAATCAAGAAG 697
| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 506 CGACGTGCGTTCACCATGA-CCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAG 564
Query 698 CATTACTATCGGAAGCACGGTGAGAAA-AAGTGGAAGTGCGATAAGTGCTCTAAGCGTTA 756
||||| || || || || || || ||| |||||||| ||||| || || |||||||||||
Sbjct 565 CATTATTACCGTAAACATGGCGA-AAAGAAGTGGAAATGCGAGAAATGTTCTAAGCGTTA 623
Query 757 CGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGACCTGTGGTACCAAAGAGTATCGATG 816
|||||||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct 624 CGCTGTTCAATCGGATTGGAAGGCTCACTCTAAGACTTGTGGTACTAAAGAATATCGATG 683
Query 817 TGACTGTGGTACCATCTTCTCTAGGA-GAGACAGTTACATCACCCACAGGGCATTCTGTG 875
|||||||||||||||||||||||| | | || ||||||||||| || || || ||||| |
Sbjct 684 TGACTGTGGTACCATCTTCTCTAG-ACGTGATAGTTACATCACACATAGAGCTTTCTGCG 742
Query 876 ATGCACTCATACA-G-GAGTCAGCAAGAAACCCCACCGTGAGCTTCACGGCAATGGCAGC 933
||||| | ||||| | |||| ||||||||||| ||||||||||| ||| ||||||||||
Sbjct 743 ATGCATTGATACAAGAGAGT--GCAAGAAACCCTACCGTGAGCTTTACGTCAATGGCAGC 800
Query 934 TG 935
||
Sbjct 801 TG 802
> Ahg935944 jgi|Araly1|935944|scaffold_500135.1
Length=1840
Score = 503 bits (272), Expect = 2e-141
Identities = 398/458 (87%), Gaps = 12/458 (3%)
Strand=Plus/Plus
Query 425 AACCAACCCGGAAAC-CCAAA-TCCAGATGCTGAAGTGATAGCGTTATCGCCAAAGACGA 482
|||||||| | ||| ||||| ||| ||||| ||||||||||| ||||| |||||||| |
Sbjct 186 AACCAACCAAG-AACTCCAAATTCC-GATGCAGAAGTGATAGCTTTATCTCCAAAGAC-A 242
Query 483 -TAATGGCGACGAACAGGTTCCTATGTGAAGTGTGCAACAAAGGGTTCCAGAGGGAACAG 541
||||||| || ||||| ||| | |||||||| |||||||||||||| || || |||||
Sbjct 243 CTAATGGCTACAAACAGATTCATTTGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAA 302
Query 542 AATCTGCAGCTCCACAGGAGGGGACACAACCTTCCATGGAAGCTGAAACA-AAAGTCCAA 600
||||| || || ||| | || |||||||| |||||||||||||||||||| ||| || |
Sbjct 303 AATCTACAACTTCACCGAAGAGGACACAATCTTCCATGGAAGCTGAAACAGAAA-TCGAC 361
Query 601 CAAAGAGGTGAGGAGGAAGGTGTACCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACCC 660
|||||| |||| ||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 CAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACCC 421
Query 661 CGCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGA 720
| |||||||||||||||||||||||||||||||||| ||||| || || || ||||||||
Sbjct 422 CTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTGA 481
Query 721 GAAA-AAGTGGAAGTGCGATAAGTGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAG 779
||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 482 -AAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCAGATTGGAAAG 540
Query 780 CTCACTCTAAGACCTGTGGTACCAAAGAGTATCGATGTGACTGTGGTAC-CATCTTCTCT 838
||||||| ||||| |||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 541 CTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACAC-TCTTCTCT 599
Query 839 AGGAGAGACAGTTACATCACCCACAGGGCATTCTGTGA 876
|| ||||||||| |||||| || || || ||||||||
Sbjct 600 CGGCGAGACAGTTTCATCACACATAGAGCTTTCTGTGA 637
> Ahg485418 jgi|Araly1|485418|fgenesh2_kg.5__1410__AT3G50700.1
Length=1983
Score = 230 bits (124), Expect = 4e-59
Identities = 341/445 (77%), Gaps = 18/445 (4%)
Strand=Plus/Plus
Query 444 ATCCAGATG-CTGAAGTGATAGCGTTATCGCCAAAGACGA-TAATGGCGACGAACAGGTT 501
||||||| | | ||||| ||||| ||||| ||||| || | || | || || ||||| ||
Sbjct 647 ATCCAGA-GTCAGAAGTTATAGCTTTATCACCAAAAAC-ATTACTAGCAACAAACAGATT 704
Query 502 CCTATGTGAAGTGTGCAACAAAGGGTTCCAGAGGGAACAGAATCTGCAGCTCCA-CAGGA 560
| |||||||| | || ||||||||||| || || || || ||||| || || || | |
Sbjct 705 CGTATGTGAAATCTGTAACAAAGGGTTTCAAAGAGACCAAAATCTTCAACTTCATC-GCC 763
Query 561 GGGGACACAACCTT-CCATGGAAGCTGAAACA-AAAGTCCAACAAAGAGGTGAGGAGGAA 618
| |||||||| || ||||||||||| || ||| || |||||||| |||| || ||
Sbjct 764 GTGGACACAA-TTTACCATGGAAGCTTCGTCAGAAA-TCGAACAAAGAAGTGAAGAAAAA 821
Query 619 GGTGTACCTTTGTCC-GGAGCCCTCG-TGCGTCCACCATGACCCCGCACGTGCTCTCGGA 676
|| || ||||||| | || | | || || || |||||||| |||||||| | |||
Sbjct 822 AGTCTATGTTTGTCCTGAAG--TTAGTTGTGTTCATCATGACCCTTCACGTGCTTTAGGA 879
Query 677 GACCTCACCGGAATCAAGAAGCA-TTACTATCGGAAGCACGGTGAGAAAAAGTGGAAGTG 735
|| || || ||||||||||| || || | |||||| || |||||||| |||||||| ||
Sbjct 880 GATCTAACTGGAATCAAGAAACACTT-TTGTCGGAAACATGGTGAGAAGAAGTGGAAATG 938
Query 736 CGATAAGTGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGACCTG 795
||||| || || ||| ||||||||||||||||||||||||||||| || |||| ||
Sbjct 939 TGATAAATGTTCAAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTG 998
Query 796 TGGTACCAAAGAGTATCGATGTGACTGTGGTAC-CATCTTCTCTAGGAGAGACAGTTACA 854
|||||| ||||||||| |||||| ||||| || | | || |||||||| || |||| |
Sbjct 999 TGGTACTAAAGAGTATAAATGTGATTGTGGGACTC-TGTTTTCTAGGAGGGATAGTTTTA 1057
Query 855 TCACCCACAGGGCATTCTGTGATGC 879
| || || || ||||| ||||||||
Sbjct 1058 TAACGCATAGAGCATTTTGTGATGC 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73285631380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5